Csa4G646240.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G646240.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 22037045 .. 22037967 (-)
Sequence length	555

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGATTAATGTCGTATATAATATAAAAGTGGAAGAAACTTTCCATACACTTTCTCCACCGAAAAGAATAACAGAACTGAGCTCATCAAAGAACAAAAAGTCCTTTTGGCACGACCATTTCATGAGCCCTCCATCATTGAAGAACCATCTCCAAAACCACTGTTCTTCGTTCAGTTCTTTCAACAAACCATTTTCTTTTCTCTTCAGCAATTTCTCGATGTGTCATTCCAAGACGATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGGTTCGTTCACTTATATTTCGAAGTTCATTGTGCTGTTTGTTTGTTTGCTTCATTTTGTTTTGTAATGATGTTGACAAGAACCTGACGGATTGTTGTTGTTGAATGGTTTGTTCTTAAGCGGTTCATCAAATCCGTGATAAGATAACAGTGTCGAGTGTAGGTAACAGTGGAGTGTAGTTGTTGATGGGTTTGTTGAATTGTCTACTCGTATTGTAATGATAAGAAAAGATAAACTCTACTATCAAGTATGGATAGATCATTTGAGGAATATGCATGAGAGAAAGTTGTATAAATATTTCAAATTTTGTATTA

mRNA sequence

ATGAGCCCTCCATCATTGAAGAACCATCTCCAAAACCACTGTTCTTCGTTCAGTTCTTTCAACAAACCATTTTCTTTTCTCTTCAGCAATTTCTCGATGTGTCATTCCAAGACGATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGGTTCGTTCACTTATATTTCGAAGTTCATTGTGCTGTTTGTTTGTTTGCTTCATTTTGTTTTGTAA

Coding sequence (CDS)

ATGAGCCCTCCATCATTGAAGAACCATCTCCAAAACCACTGTTCTTCGTTCAGTTCTTTCAACAAACCATTTTCTTTTCTCTTCAGCAATTTCTCGATGTGTCATTCCAAGACGATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGGTTCGTTCACTTATATTTCGAAGTTCATTGTGCTGTTTGTTTGTTTGCTTCATTTTGTTTTGTAA

Protein sequence

MSPPSLKNHLQNHCSSFSSFNKPFSFLFSNFSMCHSKTMPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSFTYISKFIVLFVCLLHFVL*

Homology

[Close]

BLAST of Csa4G646240.1 vs. TrEMBL
Match: A0A0A0L054_CUCSA (Microtubule associated protein (Ase1) OS=Cucumis sativus GN=Csa_4G646240 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 2.3e-108
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MSPPSLKNHLQNHCSSFSSFNKPFSFLFSNFSMCHSKTMPFPGTRRILGSFGLWIVAFTL 60
           MSPPSLKNHLQNHCSSFSSFNKPFSFLFSNFSMCHSKTMPFPGTRRILGSFGLWIVAFTL
Sbjct: 1   MSPPSLKNHLQNHCSSFSSFNKPFSFLFSNFSMCHSKTMPFPGTRRILGSFGLWIVAFTL 60

Query: 61  FSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSY 120
           FSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSY
Sbjct: 61  FSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSY 120

Query: 121 YLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSFTYISKFIVLFVCLL 180
           YLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSFTYISKFIVLFVCLL
Sbjct: 121 YLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSFTYISKFIVLFVCLL 180

Query: 181 HFVL 185
           HFVL
Sbjct: 181 HFVL 184

[Close]

BLAST of Csa4G646240.1 vs. TrEMBL
Match: A0A061GKL0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037325 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.3e-21
Identity = 58/155 (37.42%), Postives = 77/155 (49.68%), Query Frame = 1


Query: 60  LFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-----------SYIPPPPPNFY- 119
           L   +S+ +M  PS G LCISDC+TCPVIC+ PPPPL            + PPP P +Y 
Sbjct: 6   LTRVTSEDEMGAPSAGLLCISDCATCPVICSPPPPPLLKSFPPPSPSVHHSPPPVPYYYF 65

Query: 120 ---GGFNMAPPATP---------------SYYLWGPPPPVANYFLGARPSGEMPQTVGPR 179
                ++  PP+ P               SY   G PPP   YF  A P    P  +GP 
Sbjct: 66  PPQSEYHSPPPSEPVSPPSPPRPPPPAPSSYSSKGSPPPPFKYFYNAPPGQGPPTVLGPH 125

Query: 180 DYSYPYYYFYSSNSGSFTYISKFIVLFVCLLHFVL 185
           +Y YPYYYFY+S + S  + +   ++ + L H VL
Sbjct: 126 EYPYPYYYFYASKASSLPFQASLSLVMLVLFHVVL 160

[Close]

BLAST of Csa4G646240.1 vs. TrEMBL
Match: W1P760_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00086p00122850 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 1


Query: 47  ILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPP---LSYIPPP- 106
           +LG    W +A  +    S AQ  +P+TG LCISDC++CPVIC  PPPP       P P 
Sbjct: 10  VLGRGRWWWMAVMILLMGSSAQ-ELPATGLLCISDCASCPVICAPPPPPSQQYGATPTPH 69

Query: 107 --PPNFYGGFNMAPPATPSYYLWG---PPPPVANYFLGARPSGEMPQTVGPRDYSYPYYY 166
             PP      +  PP  PSYY      PPPP +NY          P + G   Y YPYY+
Sbjct: 70  KSPPPIISSSSFPPPPPPSYYSSSSVPPPPPPSNYVNVPSVQQPPPPSRGGSGYPYPYYF 129

Query: 167 FYSSNSG----SFTYISKFIVL 176
           FYSS+SG     F+++S F +L
Sbjct: 130 FYSSSSGVSAHPFSFLSSFFLL 150

[Close]

BLAST of Csa4G646240.1 vs. TrEMBL
Match: I1JTY5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G053000 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.6e-16
Identity = 55/138 (39.86%), Postives = 70/138 (50.72%), Query Frame = 1


Query: 64  SSKAQMAVPSTGQLCISDCSTCPVICTAPP------------------PPLSYIPPPPPN 123
           SS+ ++  PS+G  CISDC+ CPVIC+ PP                  PPLSY+ PPPP 
Sbjct: 30  SSEEKVEDPSSGLFCISDCAKCPVICSPPPPMLITPPHPPTSPSVPHSPPLSYLSPPPPK 89

Query: 124 FYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSG-EMPQTV---GPRDYSYPYYYFYSS 180
                 + PP  PS     PPPP  +Y     PSG   PQ      P D+SYPYYYFY+S
Sbjct: 90  ----SQLPPPPPPSRI--APPPPFKSY--NTPPSGLTQPQPTVISAPHDFSYPYYYFYAS 149

[Close]

BLAST of Csa4G646240.1 vs. TrEMBL
Match: F8WL72_CITUN (Putative uncharacterized protein ORF05 OS=Citrus unshiu GN=ORF05 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-15
Identity = 51/149 (34.23%), Postives = 69/149 (46.31%), Query Frame = 1


Query: 55  IVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPP------------------PPL 114
           ++   L   +++ Q A P+ G LCISDC+TCPVIC+ PP                  PP 
Sbjct: 23  MMTMMLKGVAAEDQTAGPAAGLLCISDCATCPVICSPPPPSPEESDTPVAPPPTHHSPPQ 82

Query: 115 SYIPPPPPNFYGGFNMAPPATP--------SYYLWGPPPPVANYFLGARPSGEMPQTVGP 174
           SY   PPP         PP  P        S   WG PPP    +    P G+ P T  P
Sbjct: 83  SYYHSPPPPSPTSSPPPPPPPPRTSEPPSGSSPSWGTPPPPPFKYNNNVPPGQGPPTTVP 142

Query: 175 RDYSYPYYYFYSSNSGSFTYISKFIVLFV 178
            DY YPYYYFY+S + S +  +  +++ +
Sbjct: 143 HDYPYPYYYFYASRASSLSCQASILLMIL 171

[Close]

BLAST of Csa4G646240.1 vs. TAIR10
Match: AT5G11990.1 (AT5G11990.1 proline-rich family protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 49/165 (29.70%), Postives = 68/165 (41.21%), Query Frame = 1


Query: 53  LWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP--------------PLSY 112
           L +V     S S +  +  P    LCIS+CSTCP IC+ PP               PLS 
Sbjct: 10  LVMVMVVASSPSDQTNVLTP----LCISECSTCPTICSPPPSKPSPSMSPPPSPSLPLSS 69

Query: 113 IPPPPPNFYG-----GFNMAPPATPSYYLWGPPPPVANYFLGARP--------SGEMP-- 172
            PPPPP           +++PP  P   +  PPPP   YF    P         G  P  
Sbjct: 70  SPPPPPPHKHSPPPLSQSLSPP--PLITVIHPPPPRFYYFESTPPPPPLSPDGKGSPPSV 129

Query: 173 ---------QTVGPRD--YSYPYYYFYSSNSGSFTYISKFIVLFV 178
                    Q+ G +   Y +PY+YFY++++ +  + S F++  V
Sbjct: 130 PSSPPSPKGQSQGQQQPPYPFPYFYFYTASNATLLFSSSFLIALV 168

[Close]

BLAST of Csa4G646240.1 vs. NCBI nr
Match: gi|700200192|gb|KGN55350.1| (Microtubule associated protein (Ase1) [Cucumis sativus])

HSP 1 Score: 399.4 bits (1025), Expect = 3.3e-108
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MSPPSLKNHLQNHCSSFSSFNKPFSFLFSNFSMCHSKTMPFPGTRRILGSFGLWIVAFTL 60
           MSPPSLKNHLQNHCSSFSSFNKPFSFLFSNFSMCHSKTMPFPGTRRILGSFGLWIVAFTL
Sbjct: 1   MSPPSLKNHLQNHCSSFSSFNKPFSFLFSNFSMCHSKTMPFPGTRRILGSFGLWIVAFTL 60

Query: 61  FSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSY 120
           FSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSY
Sbjct: 61  FSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSY 120

Query: 121 YLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSFTYISKFIVLFVCLL 180
           YLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSFTYISKFIVLFVCLL
Sbjct: 121 YLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSFTYISKFIVLFVCLL 180

Query: 181 HFVL 185
           HFVL
Sbjct: 181 HFVL 184

[Close]

BLAST of Csa4G646240.1 vs. NCBI nr
Match: gi|731385032|ref|XP_010648362.1| (PREDICTED: extensin [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21
Identity = 60/140 (42.86%), Postives = 72/140 (51.43%), Query Frame = 1


Query: 65  SKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIP------------------PPPPNF 124
           S+ Q  VP TG LCISDC+TCPVIC+ PPPP  Y P                  PPPP+ 
Sbjct: 34  SEDQTGVPPTGMLCISDCATCPVICSPPPPPSEYKPPHSPPSHHSPAPAYHSHSPPPPSS 93

Query: 125 YGGFNMAPPATPSYYL-WGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSGS 179
                 +PP  PS+Y  W  PPP  NY     PSG  P   G   Y YPYYYFY+SNS S
Sbjct: 94  PSPPPPSPPPPPSFYFSWDAPPPPFNYI--GIPSGPAPPAKGQPGYGYPYYYFYASNSFS 153

[Close]

BLAST of Csa4G646240.1 vs. NCBI nr
Match: gi|590574196|ref|XP_007012334.1| (Uncharacterized protein TCM_037325 [Theobroma cacao])

HSP 1 Score: 109.0 bits (271), Expect = 9.0e-21
Identity = 58/155 (37.42%), Postives = 77/155 (49.68%), Query Frame = 1


Query: 60  LFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-----------SYIPPPPPNFY- 119
           L   +S+ +M  PS G LCISDC+TCPVIC+ PPPPL            + PPP P +Y 
Sbjct: 6   LTRVTSEDEMGAPSAGLLCISDCATCPVICSPPPPPLLKSFPPPSPSVHHSPPPVPYYYF 65

Query: 120 ---GGFNMAPPATP---------------SYYLWGPPPPVANYFLGARPSGEMPQTVGPR 179
                ++  PP+ P               SY   G PPP   YF  A P    P  +GP 
Sbjct: 66  PPQSEYHSPPPSEPVSPPSPPRPPPPAPSSYSSKGSPPPPFKYFYNAPPGQGPPTVLGPH 125

Query: 180 DYSYPYYYFYSSNSGSFTYISKFIVLFVCLLHFVL 185
           +Y YPYYYFY+S + S  + +   ++ + L H VL
Sbjct: 126 EYPYPYYYFYASKASSLPFQASLSLVMLVLFHVVL 160

[Close]

BLAST of Csa4G646240.1 vs. NCBI nr
Match: gi|1009168446|ref|XP_015902662.1| (PREDICTED: extensin-1 [Ziziphus jujuba])

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-18
Identity = 64/171 (37.43%), Postives = 80/171 (46.78%), Query Frame = 1


Query: 54  WIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP------------------- 113
           +I   TL + +   Q+  P  G LCISDC+TCPVIC+ PPP                   
Sbjct: 19  FIALLTLATLTYGGQVGDPQAGLLCISDCATCPVICSPPPPILQSHPPPSPSLPTSPPPE 78

Query: 114 ----PLSYI----------------PPPPPNFYGGFNMAPPATPSYY-LWGPPPPVANYF 173
               P SY                 P PPP+ +       P +PS+Y  WG PPP  NYF
Sbjct: 79  HHSPPQSYYGFPPPPSAPSTPPPSPPSPPPSPHKETPPTSPPSPSWYPSWGTPPPPFNYF 138

Query: 174 LGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSF--TYISKFIVLFVCLLHF 183
               PSG +  T GP DYSYPYYYFYSS + S    ++S +   F+ LL F
Sbjct: 139 -NQPPSGPLTPTRGPHDYSYPYYYFYSSEASSLFSVHVSSY---FLILLFF 185

[Close]

BLAST of Csa4G646240.1 vs. NCBI nr
Match: gi|586682932|ref|XP_006841135.1| (PREDICTED: formin-like protein 20 [Amborella trichopoda])

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-18
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 1


Query: 47  ILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPP---LSYIPPP- 106
           +LG    W +A  +    S AQ  +P+TG LCISDC++CPVIC  PPPP       P P 
Sbjct: 10  VLGRGRWWWMAVMILLMGSSAQ-ELPATGLLCISDCASCPVICAPPPPPSQQYGATPTPH 69

Query: 107 --PPNFYGGFNMAPPATPSYYLWG---PPPPVANYFLGARPSGEMPQTVGPRDYSYPYYY 166
             PP      +  PP  PSYY      PPPP +NY          P + G   Y YPYY+
Sbjct: 70  KSPPPIISSSSFPPPPPPSYYSSSSVPPPPPPSNYVNVPSVQQPPPPSRGGSGYPYPYYF 129

Query: 167 FYSSNSG----SFTYISKFIVL 176
           FYSS+SG     F+++S F +L
Sbjct: 130 FYSSSSGVSAHPFSFLSSFFLL 150

The following BLAST results are available for this feature:

BLAST of Csa4G646240.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L054_CUCSA	2.3e-108	100.00	Microtubule associated protein (Ase1) OS=Cucumis sativus GN=Csa_4G646240 PE=4 SV...	[more]
A0A061GKL0_THECC	6.3e-21	37.42	Uncharacterized protein OS=Theobroma cacao GN=TCM_037325 PE=4 SV=1	[more]
W1P760_AMBTC	2.2e-18	40.85	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00086p00122850 PE=4 SV=...	[more]
I1JTY5_SOYBN	3.6e-16	39.86	Uncharacterized protein OS=Glycine max GN=GLYMA_04G053000 PE=4 SV=1	[more]
F8WL72_CITUN	1.8e-15	34.23	Putative uncharacterized protein ORF05 OS=Citrus unshiu GN=ORF05 PE=4 SV=1	[more]

BLAST of Csa4G646240.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11990.1	1.2e-10	29.70	proline-rich family protein	[more]

BLAST of Csa4G646240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200192\|gb\|KGN55350.1\|	3.3e-108	100.00	Microtubule associated protein (Ase1) [Cucumis sativus]	[more]
gi\|731385032\|ref\|XP_010648362.1\|	6.9e-21	42.86	PREDICTED: extensin [Vitis vinifera]	[more]
gi\|590574196\|ref\|XP_007012334.1\|	9.0e-21	37.42	Uncharacterized protein TCM_037325 [Theobroma cacao]	[more]
gi\|1009168446\|ref\|XP_015902662.1\|	2.4e-18	37.43	PREDICTED: extensin-1 [Ziziphus jujuba]	[more]
gi\|586682932\|ref\|XP_006841135.1\|	3.2e-18	40.85	PREDICTED: formin-like protein 20 [Amborella trichopoda]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G646240	Csa4G646240	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa4G646240.1	Csa4G646240.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa4G646240.1.utr3p1	Csa4G646240.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa4G646240.1.cds1	Csa4G646240.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa4G646240.1.utr5p1	Csa4G646240.1.utr5p1	five_prime_UTR