Csa4G622820.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGAGGAGAAGAAGATCCACACGTTAAGGTTCGGAAGTTCCATTCTAGTTCCTTCCGTTCAAGAGTTAGCCAAACACCCCATCACCGAAATTCCACATCGATACATCCGCCCCGATCTCCTCCACCACTCCCCGATCGCCTCCGCCGCTTCCCAAATCCCCGTGATCGACATGTCCAACTTCCGCTCTAATGATACAATGGACTCCGAATTGTCTCGCCTTCACTCCGCCTGTAAAAATTGGGGATTCTTTCAGGTTCATAATATCTCCTCTCTCTATCTCTGTTTCTATGTGTTTAATTAATAAGTAGAATCTGAAAATGATTGGTAAAATTAATTACAGTTGGTGAAGCATGGAGTGAGCGATTCATTGATGGAGAGAATGAAGATGGAAACGCAGAAATTGTTCCAACTTCCGATTGAAGAGAAGAAAAAGCTATGGCAGAGAGAAGGGGATGTGGAGGGGTTTGGACAAGCTTTCGTTACAAGTGAAGAACATAAATTGAATTGGTGTGATATTTTCTTCATTGCTACATCACCTTTAAAGTTCAGGAATCCTCGATTGTTTCAAAATCTCCCTCTCTCTTTGAGGTTTGATAATTCCTTCCATCACAAAACTTTTTAAATGATTCTCAAACTCATATGAATCCTAGAAATTGAACTCCGAACTCATAAAAATTAAACCAACCAACCTATAAAATTTTTCTAAGCAAAGATTAATCTTGTAATTTAAGCAAGTGAGAATAAAAAGAAGTAATCCATTATAGGTTAAAACAAAGTTCATTAGTTTAATTGATTTTAAAAAAAAGAATTAGGAAATAATTATGAAACTGTATTGGTAAGCAGAGAAACATTGGAGGAGTACTCGGCGGCGGTGAAGGATGTGACGACGGCGATAATTGGCGGCATTGAGAAAGCGTTGGGGATAAAAGAGGGAGAGATGAGTGAGTTGTTCAAAGACGGTAATCAATCGATGAGAATAAACTATTACCCGCGGTGCCCGGAGCCGGAGAAGGTGATCGGACTGACGCCTCATTCCGACTCGGTTGGGCTAACGATTCTGCTCCAAATCAACGAAGTAGAAGGTCTGAAGATTAAGAAAGAAGGAAATTGGATTACCGTTATGCCCCTTCCAAATGCCTTCATCGTTAACATTGGCGACATCTTGGAGGTAATTTTACACTCCCCTCTCATGCACTTCTCTTTTCTAACCTAATAATATAATAAAGGCCCTTAATCTTAAAAAAAAAATGCCTATTGAAAAATTTAATAAGTACTTTAAACTTATAAATTTTTTAAAAATATTTCCATTTATCCTATTTTTACATCAAATCTCTAAGCTCTCAAAAATAAAAATTACTAAAATTTAAATTTAAATTTCTATAAATATGTGGATATTTATATCAATATTTTTTAGGGTGAATCGATACAATAACACACAAATAAAAAGATATTTTTTAAAAGAACTCTATAATATAAATAATAAATAAATTTACTTATTTGAAAAATCTATATTTAATAATTTAAATTACACAATTTAGATTGAAAGAGAGTTTTGGAAAAAGTTAGTATAAAAAAAATCTCACAATAATGATCAAATAAAAAAAACTAGACTATTAGTGTGTTTTGGTAGTCAAATATATATTTTTATTTGACAATTAACTTAATTACAATCATAATTGTTGAAATTGGTTGTGTTCGTGATCTATTATGCTATATTCAAATAAATTTAATAATATAGTTTTAACTTAAATTTTGATTTTGATTTTAGTTGGTGAAAAAATTGATGTCAAATTTGAATAGACGATAATATATTTTAACATTTTTTAAACTCAAGTGTATTTTTAAAACTTTTGATAGTTATTTTTTAAACAAAACTTCAATGGTCTCAATTTAAAACTATGGGTAAAATTAACTTTGAACAATTTTCAAAAGTTTAAGTGTATTTTTAAATTTTTTAAAAGTTTAGGTGTATTTTTAAAACAAATATAAAAGTTGAGGGATATTTTTTATAATTTAGCGAATGATAAAAATAAAATATTTGTGATGTAACAAATAAATGAGTATAATGTGATATTTTTCATTTTTGTAACGGATGATACTTAGGTGTGTTTTAACATCACCCGTCTCTTTCTCGAACACCCATATTAAAAGATATAAAAGTATTCTAGAAAAAAGAAAAAACAAATTTGCATCGTTTTCATGATCGGATAATTCGATGGAATAAAAGATTGGATGAAAGACAAACTCAGTTTGGTTTATTTATTTAACTTTTTATTTAATTTAGTAGACAATCTTGATTTTAAAAACCATAAATTTCCAACCTTTTAAAATATGTGATGTCTTCGTCTCTTTGTTATTATAATATATCTCTAACATTTTTTTTAATTTGTTAAAATATTACTCATTCTATTCTCAAAATCACTTGAACAAATTTTAATAGTATGAAAATTTTGCAAATTAAACGAATTGATTTAAGTGATTATTGATAAGTTTGTTTGAAATGATAATTAGAGTAAAAATTGTTTTTTTTAAATATATATTTTTAATTTTAGTAACTATTTTGACTATTTTTTTTTCTTTAAAGGAATTAGGTTGGATAGTAATTCTAACCCTTATAAAATTACTCTCAAATATACATCAAAATATTAAACCATTTTGTAAATGTGAAAATTTAAATATTCAAGAGACCAAAGCTTCTTTGAAGTTACATTACTTTATCTAATATATTTTGAAACTTATATCTATTTAGATTAGGTTTTAAACTTGTAATATTTTAAGAAAAAGTCTTTAATCATTTGGTTTAAATCACACCTAATTTGAAATTAATTAGATACAAATATGAAAAATTAAAGATTTGTTAGATAAATAGTTGGTGTTTTTAATGACTTTATCTTGAAAACACAAATATTAGTCCATTTTTTTGAAATACAAAACGTATATTAAATTTAGTTCTAAAATTGTGGTTTAACATAAACACAAGTATTTTAATTCTTAATGAGAAATTATATTTATACAATCGATTATATCATTAATGTGATTTGTCAAACACAAATAAAGTTCAACATAATTGGCGGTATATTCCTTTACTCGACTCAAGTTCTATTTGTTATACTAAAAAATACTAAAAAAATGTATATTTACTTTTTGGTTTGAAGGTTTGATTGGAGTAGTAATTTGGACTATGCTTTGTTAATTCTCTACAAAATTATTAATGGAAAGATTATTGGATTGTATGAATTTTTATCTCAAAATCAATTTAGAATGCGGCGAGTAACTCATTTATTTTATAAAGAATTTGAATTCTCTTAATTGTGAAAGTTTCAATTTATATCCGAGCAAAGTTGACGTTATTTACTTGTTTACCTCTATTTCTCACACTTTTTTTCTTCGAGCTTTCCAACCTTCTCCATCTGTTTTCGTCTTTGGAAAATTTTGTAGACTATATTTTCAATATTGCTTTGATTTAATAATAATTATAAGTATGGCAGATGGTAACAAATGGGAAATACAAAAGCATAGAGCATTGTGCAACAGTGAACTCAAAGAGTGAAAGGCTGTCCATAGCAACTTTCTACACTCCTAGTTTGGAGAAGGAAATAAGGCCAACACCATCCCTCATCACACCACATTCTCCTCCCTTGTTTCGAACTTTGACATATCAAGAGTATGTGAAGGGCCTTTTCTCTCGAACACTCGACGGAAAAACTTATCTCGACGCTATGCGAATTCACCCTCCTTCAACCTAACCATTGCTTTTCAACTCAAAATCTAAAATTGTCATATGAATTCATCATTTTTCTTACTAGATTTAAATAATATATTTGAATTTGACTATTGTGGATGTTAGTGTATTATATGATTATTATTTACTCGAGTATTGTGACTTAGTA ATGGCGGAGGAGAAGAAGATCCACACGTTAAGAGAAACATTGGAGGAGTACTCGGCGGCGGTGAAGGATGTGACGACGGCGATAATTGGCGGCATTGAGAAAGCGTTGGGGATAAAAGAGGGAGAGATGAGTGAGTTGTTCAAAGACGGTAATCAATCGATGAGAATAAACTATTACCCGCGGTGCCCGGAGCCGGAGAAGGTGATCGGACTGACGCCTCATTCCGACTCGGTTGGGCTAACGATTCTGCTCCAAATCAACGAAGTAGAAGGTCTGAAGATTAAGAAAGAAGGAAATTGGATTACCGTTATGCCCCTTCCAAATGCCTTCATCGTTAACATTGGCGACATCTTGGAGATGGTAACAAATGGGAAATACAAAAGCATAGAGCATTGTGCAACAGTGAACTCAAAGAGTGAAAGGCTGTCCATAGCAACTTTCTACACTCCTAGTTTGGAGAAGGAAATAAGGCCAACACCATCCCTCATCACACCACATTCTCCTCCCTTGTTTCGAACTTTGACATATCAAGAGTATGTGAAGGGCCTTTTCTCTCGAACACTCGACGGAAAAACTTATCTCGACGCTATGCGAATTCACCCTCCTTCAACCTAA ATGGCGGAGGAGAAGAAGATCCACACGTTAAGAGAAACATTGGAGGAGTACTCGGCGGCGGTGAAGGATGTGACGACGGCGATAATTGGCGGCATTGAGAAAGCGTTGGGGATAAAAGAGGGAGAGATGAGTGAGTTGTTCAAAGACGGTAATCAATCGATGAGAATAAACTATTACCCGCGGTGCCCGGAGCCGGAGAAGGTGATCGGACTGACGCCTCATTCCGACTCGGTTGGGCTAACGATTCTGCTCCAAATCAACGAAGTAGAAGGTCTGAAGATTAAGAAAGAAGGAAATTGGATTACCGTTATGCCCCTTCCAAATGCCTTCATCGTTAACATTGGCGACATCTTGGAGATGGTAACAAATGGGAAATACAAAAGCATAGAGCATTGTGCAACAGTGAACTCAAAGAGTGAAAGGCTGTCCATAGCAACTTTCTACACTCCTAGTTTGGAGAAGGAAATAAGGCCAACACCATCCCTCATCACACCACATTCTCCTCCCTTGTTTCGAACTTTGACATATCAAGAGTATGTGAAGGGCCTTTTCTCTCGAACACTCGACGGAAAAACTTATCTCGACGCTATGCGAATTCACCCTCCTTCAACCTAA MAEEKKIHTLRETLEEYSAAVKDVTTAIIGGIEKALGIKEGEMSELFKDGNQSMRINYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGNWITVMPLPNAFIVNIGDILEMVTNGKYKSIEHCATVNSKSERLSIATFYTPSLEKEIRPTPSLITPHSPPLFRTLTYQEYVKGLFSRTLDGKTYLDAMRIHPPST*
BLAST of Csa4G622820.1 vs. Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 3.7e-60 Identity = 114/191 (59.69%), Postives = 144/191 (75.39%), Query Frame = 1
BLAST of Csa4G622820.1 vs. Swiss-Prot
Match: DIOX2_PAPSO (Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 8.3e-60 Identity = 116/194 (59.79%), Postives = 148/194 (76.29%), Query Frame = 1
BLAST of Csa4G622820.1 vs. Swiss-Prot
Match: DIOX1_PAPSO (Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 3.5e-58 Identity = 115/194 (59.28%), Postives = 146/194 (75.26%), Query Frame = 1
BLAST of Csa4G622820.1 vs. Swiss-Prot
Match: DIOX3_PAPSO (Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 3.3e-56 Identity = 109/190 (57.37%), Postives = 143/190 (75.26%), Query Frame = 1
BLAST of Csa4G622820.1 vs. Swiss-Prot
Match: DLO2_ARATH (Protein DMR6-LIKE OXYGENASE 2 OS=Arabidopsis thaliana GN=DLO2 PE=2 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 4.0e-38 Identity = 79/192 (41.15%), Postives = 116/192 (60.42%), Query Frame = 1
BLAST of Csa4G622820.1 vs. TrEMBL
Match: A0A0A0KZZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622820 PE=3 SV=1) HSP 1 Score: 410.6 bits (1054), Expect = 1.1e-111 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1
BLAST of Csa4G622820.1 vs. TrEMBL
Match: A0A0R0H0V4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G263800 PE=3 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 3.3e-63 Identity = 120/189 (63.49%), Postives = 150/189 (79.37%), Query Frame = 1
BLAST of Csa4G622820.1 vs. TrEMBL
Match: A0A0B2RYL0_GLYSO (Protein SRG1 OS=Glycine soja GN=glysoja_001673 PE=3 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 3.3e-63 Identity = 120/189 (63.49%), Postives = 150/189 (79.37%), Query Frame = 1
BLAST of Csa4G622820.1 vs. TrEMBL
Match: A0A0S3SK10_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G211100 PE=3 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 5.6e-63 Identity = 119/189 (62.96%), Postives = 152/189 (80.42%), Query Frame = 1
BLAST of Csa4G622820.1 vs. TrEMBL
Match: A0A059C6Z7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02897 PE=3 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 2.1e-62 Identity = 118/192 (61.46%), Postives = 149/192 (77.60%), Query Frame = 1
BLAST of Csa4G622820.1 vs. TAIR10
Match: AT1G17020.1 (AT1G17020.1 senescence-related gene 1) HSP 1 Score: 232.6 bits (592), Expect = 2.1e-61 Identity = 114/191 (59.69%), Postives = 144/191 (75.39%), Query Frame = 1
BLAST of Csa4G622820.1 vs. TAIR10
Match: AT4G25300.1 (AT4G25300.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 232.3 bits (591), Expect = 2.8e-61 Identity = 114/190 (60.00%), Postives = 138/190 (72.63%), Query Frame = 1
BLAST of Csa4G622820.1 vs. TAIR10
Match: AT4G25310.1 (AT4G25310.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 231.5 bits (589), Expect = 4.7e-61 Identity = 112/190 (58.95%), Postives = 138/190 (72.63%), Query Frame = 1
BLAST of Csa4G622820.1 vs. TAIR10
Match: AT1G17010.1 (AT1G17010.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 218.0 bits (554), Expect = 5.4e-57 Identity = 109/190 (57.37%), Postives = 135/190 (71.05%), Query Frame = 1
BLAST of Csa4G622820.1 vs. TAIR10
Match: AT1G78550.1 (AT1G78550.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 211.8 bits (538), Expect = 3.8e-55 Identity = 100/189 (52.91%), Postives = 137/189 (72.49%), Query Frame = 1
BLAST of Csa4G622820.1 vs. NCBI nr
Match: gi|700199865|gb|KGN55023.1| (hypothetical protein Csa_4G622820 [Cucumis sativus]) HSP 1 Score: 410.6 bits (1054), Expect = 1.6e-111 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1
BLAST of Csa4G622820.1 vs. NCBI nr
Match: gi|778695605|ref|XP_004146011.2| (PREDICTED: protein SRG1-like [Cucumis sativus]) HSP 1 Score: 393.3 bits (1009), Expect = 2.6e-106 Identity = 195/196 (99.49%), Postives = 196/196 (100.00%), Query Frame = 1
BLAST of Csa4G622820.1 vs. NCBI nr
Match: gi|659127646|ref|XP_008463813.1| (PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Cucumis melo]) HSP 1 Score: 354.0 bits (907), Expect = 1.8e-94 Identity = 172/196 (87.76%), Postives = 187/196 (95.41%), Query Frame = 1
BLAST of Csa4G622820.1 vs. NCBI nr
Match: gi|659127618|ref|XP_008463796.1| (PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Cucumis melo]) HSP 1 Score: 352.4 bits (903), Expect = 5.2e-94 Identity = 173/196 (88.27%), Postives = 185/196 (94.39%), Query Frame = 1
BLAST of Csa4G622820.1 vs. NCBI nr
Match: gi|950986444|ref|XP_014503569.1| (PREDICTED: protein SRG1-like isoform X1 [Vigna radiata var. radiata]) HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63 Identity = 121/189 (64.02%), Postives = 152/189 (80.42%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
|