Csa4G618440.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G618440.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 19739607 .. 19740074 (+)
Sequence length	372

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGGCTCGACTCATGCTAGGGGAGCTGAAGGCGCGACTCAAGGTCGGCGGAAGGGCGTGCGGCTCACGGCTCGGATGGAAGGGCGTGGCTCACATCTCAAGCCCAAGGGACACGCGGCTCGCAAGCGGCAGAAGGACGTGCGGTTTACGGCTCGATTGAAATGAGCTCGGCTTACGCATTGGGCTCACGGTTCGGGCGGAAGTGGCGCGCAGCTCACGGCTCGGAATCTGAAGGGGATTGGCTGAAGGGAAGGATGCGGCTGGGCGACTTGGTCTGAGCAGCGCGAGACGGAAGATTGCTCGTGTTTTGAAACTTCAGATTATTGACTTCAGATCAAACCTGAGTGAGGAAAGAGCATTTTTATCGTTTTTTTCTTTCTTCTTCGGTGGACTCCTCAAATGGAGGTCACTCGCCGATAGTGGGATTACTCGCTCCGTTCATCTTTCCGGCGAGAAGGGATGA

mRNA sequence

ATGGAAGGGGCTCGACTCATGCTAGGGGAGCTGAAGGCGCGACTCAAGGTCGGCGGAAGGGCGTGCGGCTCACGGCTCGGATGGAAGGGCGTGGCTCACATCTCAAGCCCAAGGGACACGCGGCTCGCAAGCGGCAGAAGGACGGGATTGGCTGAAGGGAAGGATGCGGCTGGGCGACTTGGTCTGAGCAGCGCGAGACGGAAGATTGCTCGTGTTTTGAAACTTCAGATTATTGACTTCAGATCAAACCTGAGTGAGGAAAGAGCATTTTTATCGTTTTTTTCTTTCTTCTTCGGTGGACTCCTCAAATGGAGGTCACTCGCCGATAGTGGGATTACTCGCTCCGTTCATCTTTCCGGCGAGAAGGGATGA

Coding sequence (CDS)

ATGGAAGGGGCTCGACTCATGCTAGGGGAGCTGAAGGCGCGACTCAAGGTCGGCGGAAGGGCGTGCGGCTCACGGCTCGGATGGAAGGGCGTGGCTCACATCTCAAGCCCAAGGGACACGCGGCTCGCAAGCGGCAGAAGGACGGGATTGGCTGAAGGGAAGGATGCGGCTGGGCGACTTGGTCTGAGCAGCGCGAGACGGAAGATTGCTCGTGTTTTGAAACTTCAGATTATTGACTTCAGATCAAACCTGAGTGAGGAAAGAGCATTTTTATCGTTTTTTTCTTTCTTCTTCGGTGGACTCCTCAAATGGAGGTCACTCGCCGATAGTGGGATTACTCGCTCCGTTCATCTTTCCGGCGAGAAGGGATGA

Protein sequence

MEGARLMLGELKARLKVGGRACGSRLGWKGVAHISSPRDTRLASGRRTGLAEGKDAAGRLGLSSARRKIARVLKLQIIDFRSNLSEERAFLSFFSFFFGGLLKWRSLADSGITRSVHLSGEKG*

Homology

[Close]

BLAST of Csa4G618440.1 vs. TrEMBL
Match: A0A0A0L1R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G618440 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.2e-61
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MEGARLMLGELKARLKVGGRACGSRLGWKGVAHISSPRDTRLASGRRTGLAEGKDAAGRL 60
           MEGARLMLGELKARLKVGGRACGSRLGWKGVAHISSPRDTRLASGRRTGLAEGKDAAGRL
Sbjct: 1   MEGARLMLGELKARLKVGGRACGSRLGWKGVAHISSPRDTRLASGRRTGLAEGKDAAGRL 60

Query: 61  GLSSARRKIARVLKLQIIDFRSNLSEERAFLSFFSFFFGGLLKWRSLADSGITRSVHLSG 120
           GLSSARRKIARVLKLQIIDFRSNLSEERAFLSFFSFFFGGLLKWRSLADSGITRSVHLSG
Sbjct: 61  GLSSARRKIARVLKLQIIDFRSNLSEERAFLSFFSFFFGGLLKWRSLADSGITRSVHLSG 120

Query: 121 EKG 124
           EKG
Sbjct: 121 EKG 123

[Close]

BLAST of Csa4G618440.1 vs. NCBI nr
Match: gi|700199821|gb|KGN54979.1| (hypothetical protein Csa_4G618440 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 6.0e-61
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MEGARLMLGELKARLKVGGRACGSRLGWKGVAHISSPRDTRLASGRRTGLAEGKDAAGRL 60
           MEGARLMLGELKARLKVGGRACGSRLGWKGVAHISSPRDTRLASGRRTGLAEGKDAAGRL
Sbjct: 1   MEGARLMLGELKARLKVGGRACGSRLGWKGVAHISSPRDTRLASGRRTGLAEGKDAAGRL 60

Query: 61  GLSSARRKIARVLKLQIIDFRSNLSEERAFLSFFSFFFGGLLKWRSLADSGITRSVHLSG 120
           GLSSARRKIARVLKLQIIDFRSNLSEERAFLSFFSFFFGGLLKWRSLADSGITRSVHLSG
Sbjct: 61  GLSSARRKIARVLKLQIIDFRSNLSEERAFLSFFSFFFGGLLKWRSLADSGITRSVHLSG 120

Query: 121 EKG 124
           EKG
Sbjct: 121 EKG 123

The following BLAST results are available for this feature:

BLAST of Csa4G618440.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1R5_CUCSA	4.2e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G618440 PE=4 SV=1	[more]

BLAST of Csa4G618440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199821\|gb\|KGN54979.1\|	6.0e-61	100.00	hypothetical protein Csa_4G618440 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G618440	Csa4G618440	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa4G618440.1	Csa4G618440.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa4G618440.1.cds1	Csa4G618440.1.cds1	CDS
Csa4G618440.1.cds2	Csa4G618440.1.cds2	CDS