Csa4G342560.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTGATTATATTAACGAAGATATTTGTACATACTCGTATACCTATAATCATCCTCTTATCTAATCAATGTAAACATTTGGTTGCATCTTCAAAACATTCTTGACATCTTTGTCCTATTTGAATCATGTAGATAATCGGATTTAAATTGATTTTTTTTGGGTGTGGTATGAAAATTAGGTTAATTTATAAATTAAAAATAGTATTGTAACAAACTTTGGTAGATATGATTTGGAGATGCATCTAGTTCATACAAGCGATCATAAGGAGACAGCTGTGGTTGCAATTCTATACAAATTTGGACGTCCGGATCGCTTTCTTTCAAAAGTAGGTTTACTTTTTCTATACAAATGTTAAGGATAAAATAAGAATATTTTGAAACTTATAATTATTTTTGATGATAAGATGATTTGATTGTCATTTTGTGGAAGTAGTTATTCCATCACCTAAAATCAATTGGGAAAAAAGAAGAAAAAGAAATAGGGATAGTGAATCCAGGAGACATCAAGTTTGGGGGCAGAAAATATTACAGATACATTGGTTCTCTCACCGTTCCTCCTTGTACTGAAGGGGTCCTTTGGACCATACAAAAGAAGGTTTCTTTTCATTCTTTCAAATCATTTCCGCCCATTTGATCATCGTTTCCCTTTTTTTCTTCTCTTCTCTTTGCTTTGATACATTCATCATGTGTTTATAGAAAACAAGTCAGTTCTTACAAATACAATGCAACTCTTCTACCTCCATTAATACAATTTTTGATAAAAAAAAGATGAAAGAAACATAAATTACTGGCCTCCAATTTCTACTTTTGATCTGTTTTGTAATTTATGTTTGTGAATTTATCATTTCAAAAGATTCCATTTAAATTTAACGATAGTGTTTCACAATAGAGCATTGCATTTTTCCAGAAGTTAAAAGATGATTGTATTATTTACATAAAATTAGTACAATAAATTAATTTGAAGGTTCAAATATGATTTTAACCAAAATCAATCTTACTTATTATTTATGTAATTTTCTTTTGAAGATATTTTTGTAGCCAAACTTTAAAATTAAAGGTCCTTTTGCTTTTGACAATAAAACCTTATCTTTTAGTACTAAAGTTTTAATTTTATATGGTAGTTTATAACACTTATTTCTTATTTTAAAAAATAGATAAATTTTGAAAACAAAAAAGAAAGTAAATTTGAATATCTAGAATTTTTCTTTTTATTTCCAAATTTCAACTAAACATTATCTGGATGATGTAGGTGAGAACAGTTTCAAGGGAACAAGTGAGAGCTTTGAAGACTGCAATTCATGATGTGAGTGTTTTCCTTTCCTTTCCTTTCTTAGTGAAGTTTTTTTAAATAAAAAAACTATTTTATAAAGATTAAAATATATTTTTTTTTATTGAAATTTTATTAACTCACTGCTTTGAATTTTCTGTGGTCCTTTTTTGTTCAATTCTCTCTGTCAAATCCCCATTAATAACAGACCTAAATTAATAAGATAGAGAAACTATTTATCCATACCACTCAAATTAATTATACTTAATTTTTTTTATCAATTGTAAATATTTTGTGAAATGTTTTATTTTTGATAATTTTCTTTTAATTAATTGTAAAATTAGTCCTAACAACAGAAAAAAAAATTGTTAACTTTTCCATGTTAGTTTTGAAACACAAAGGTTGTGAGAAAATGATTACTTTTCTTTTACCCTGATTGAATAAAAGTTAACTTAGAGTAAGTATGGAATCTAAGAGAAAATAAGGAAATAAAAAAAAAAAAAAACTATTCTACATATTTTTAATATACAGAGAAAAATGATATTTTATTATTTTTTTGAATTATTTTACATATTAGAACAAAACTATTCCCTCTTTATTATTTCCATTTTAAAATTTTGCTTGAAAATATATAATTTATTTTGGTATTAAATTTCTTCATTTCAATCTTTTGAGTTGCATGTTTCACTCCTTAGGGTTTGAAGACAAATGCAAGGCCAACACAAGCATTAGATGGAAGAAGGATTCAATTTTATACTCCACATAAGTGA ATGATTGATTATATTAACGAAGATATTTGTACATACTCTATTGTAACAAACTTTGGTAGATATGATTTGGAGATGCATCTAGTTCATACAAGCGATCATAAGGAGACAGCTGTGGTTGCAATTCTATACAAATTTGGACGTCCGGATCGCTTTCTTTCAAAAGTGAGAACAGTTTCAAGGGAACAAGTGAGAGCTTTGAAGACTGCAATTCATGATGGTTTGAAGACAAATGCAAGGCCAACACAAGCATTAGATGGAAGAAGGATTCAATTTTATACTCCACATAAGTGA ATGATTGATTATATTAACGAAGATATTTGTACATACTCTATTGTAACAAACTTTGGTAGATATGATTTGGAGATGCATCTAGTTCATACAAGCGATCATAAGGAGACAGCTGTGGTTGCAATTCTATACAAATTTGGACGTCCGGATCGCTTTCTTTCAAAAGTGAGAACAGTTTCAAGGGAACAAGTGAGAGCTTTGAAGACTGCAATTCATGATGGTTTGAAGACAAATGCAAGGCCAACACAAGCATTAGATGGAAGAAGGATTCAATTTTATACTCCACATAAGTGA MIDYINEDICTYSIVTNFGRYDLEMHLVHTSDHKETAVVAILYKFGRPDRFLSKVRTVSREQVRALKTAIHDGLKTNARPTQALDGRRIQFYTPHK*
BLAST of Csa4G342560.1 vs. Swiss-Prot
Match: ATCA4_ARATH (Alpha carbonic anhydrase 4 OS=Arabidopsis thaliana GN=ACA4 PE=3 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 4.3e-06 Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
HSP 2 Score: 48.1 bits (113), Expect = 6.2e-05 Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 1
BLAST of Csa4G342560.1 vs. Swiss-Prot
Match: ATCA6_ARATH (Alpha carbonic anhydrase 6 OS=Arabidopsis thaliana GN=ACA6 PE=3 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 7.3e-06 Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1
BLAST of Csa4G342560.1 vs. TrEMBL
Match: A0A0A0L1S5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G342560 PE=4 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 5.4e-48 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1
BLAST of Csa4G342560.1 vs. TrEMBL
Match: A0A103Y0C0_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_021569 PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 1.5e-13 Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1
BLAST of Csa4G342560.1 vs. TrEMBL
Match: A0A059A4M0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02021 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 4.5e-10 Identity = 47/131 (35.88%), Postives = 58/131 (44.27%), Query Frame = 1
BLAST of Csa4G342560.1 vs. TrEMBL
Match: M8BTC0_AEGTA (Uncharacterized protein OS=Aegilops tauschii GN=F775_43115 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10 Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1
BLAST of Csa4G342560.1 vs. TrEMBL
Match: B9H9J1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04600g PE=4 SV=2) HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10 Identity = 48/132 (36.36%), Postives = 59/132 (44.70%), Query Frame = 1
BLAST of Csa4G342560.1 vs. TAIR10
Match: AT5G56330.1 (AT5G56330.1 alpha carbonic anhydrase 8) HSP 1 Score: 68.6 bits (166), Expect = 2.5e-12 Identity = 39/95 (41.05%), Postives = 48/95 (50.53%), Query Frame = 1
BLAST of Csa4G342560.1 vs. TAIR10
Match: AT4G20990.1 (AT4G20990.1 alpha carbonic anhydrase 4) HSP 1 Score: 52.0 bits (123), Expect = 2.4e-07 Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
HSP 2 Score: 48.1 bits (113), Expect = 3.5e-06 Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 1
BLAST of Csa4G342560.1 vs. TAIR10
Match: AT4G21000.1 (AT4G21000.1 alpha carbonic anhydrase 6) HSP 1 Score: 51.2 bits (121), Expect = 4.1e-07 Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1
BLAST of Csa4G342560.1 vs. NCBI nr
Match: gi|700199349|gb|KGN54507.1| (hypothetical protein Csa_4G342560 [Cucumis sativus]) HSP 1 Score: 198.0 bits (502), Expect = 7.7e-48 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1
BLAST of Csa4G342560.1 vs. NCBI nr
Match: gi|778694185|ref|XP_011653762.1| (PREDICTED: alpha carbonic anhydrase 4-like [Cucumis sativus]) HSP 1 Score: 131.7 bits (330), Expect = 6.8e-28 Identity = 76/131 (58.02%), Postives = 76/131 (58.02%), Query Frame = 1
BLAST of Csa4G342560.1 vs. NCBI nr
Match: gi|659129264|ref|XP_008464600.1| (PREDICTED: LOW QUALITY PROTEIN: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Cucumis melo]) HSP 1 Score: 116.7 bits (291), Expect = 2.3e-23 Identity = 70/134 (52.24%), Postives = 74/134 (55.22%), Query Frame = 1
BLAST of Csa4G342560.1 vs. NCBI nr
Match: gi|976913946|gb|KVI00184.1| (hypothetical protein Ccrd_021569, partial [Cynara cardunculus var. scolymus]) HSP 1 Score: 83.6 bits (205), Expect = 2.1e-13 Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1
BLAST of Csa4G342560.1 vs. NCBI nr
Match: gi|1009159941|ref|XP_015898085.1| (PREDICTED: alpha carbonic anhydrase 4-like [Ziziphus jujuba]) HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12 Identity = 48/132 (36.36%), Postives = 59/132 (44.70%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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