Csa4G340560.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G340560.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 14132857 .. 14133156 (-)
Sequence length300
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATTTCTCTTTCCGCGACGTCTTGTAGAAGGCGTCGCCGAAAGGTTATCATACCACATTATGGTTTGATGTACCGCGACGTGGAAGTGACTTGCTTCGCGAAAAATCTTGACCAAAATGAATCGTTCGGCTTTCCGCGACATGTTCGAGACAGATGTCGTGGTAAAGCGAAACAATATATTAATGAGTACATCTTTCGCGACGTTCGTTTTCCAGATGTCACGAAAAGTTGTATTGGAAACATACTAACACAGACGTCGCGGAAAGTCCAGCAACGCCGACATTTCTTTCAGTGA

mRNA sequence

ATGATCATTTCTCTTTCCGCGACGTCTTGTAGAAGGCGTCGCCGAAAGGTTATCATACCACATTATGGTTTGATGTACCGCGACGTGGAAGTGACTTGCTTCGCGAAAAATCTTGACCAAAATGAATCGTTCGGCTTTCCGCGACATGTTCGAGACAGATGTCGTGGTAAAGCGAAACAATATATTAATGAGTACATCTTTCGCGACGTTCGTTTTCCAGATGTCACGAAAAGTTGTATTGGAAACATACTAACACAGACGTCGCGGAAAGTCCAGCAACGCCGACATTTCTTTCAGTGA

Coding sequence (CDS)

ATGATCATTTCTCTTTCCGCGACGTCTTGTAGAAGGCGTCGCCGAAAGGTTATCATACCACATTATGGTTTGATGTACCGCGACGTGGAAGTGACTTGCTTCGCGAAAAATCTTGACCAAAATGAATCGTTCGGCTTTCCGCGACATGTTCGAGACAGATGTCGTGGTAAAGCGAAACAATATATTAATGAGTACATCTTTCGCGACGTTCGTTTTCCAGATGTCACGAAAAGTTGTATTGGAAACATACTAACACAGACGTCGCGGAAAGTCCAGCAACGCCGACATTTCTTTCAGTGA

Protein sequence

MIISLSATSCRRRRRKVIIPHYGLMYRDVEVTCFAKNLDQNESFGFPRHVRDRCRGKAKQYINEYIFRDVRFPDVTKSCIGNILTQTSRKVQQRRHFFQ*
Homology
[Close]
BLAST of Csa4G340560.1 vs. TrEMBL
Match: A0A0A0KY27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G340560 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 9.1e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MIISLSATSCRRRRRKVIIPHYGLMYRDVEVTCFAKNLDQNESFGFPRHVRDRCRGKAKQ 60
           MIISLSATSCRRRRRKVIIPHYGLMYRDVEVTCFAKNLDQNESFGFPRHVRDRCRGKAKQ
Sbjct: 1   MIISLSATSCRRRRRKVIIPHYGLMYRDVEVTCFAKNLDQNESFGFPRHVRDRCRGKAKQ 60

Query: 61  YINEYIFRDVRFPDVTKSCIGNILTQTSRKVQQRRHFFQ 100
           YINEYIFRDVRFPDVTKSCIGNILTQTSRKVQQRRHFFQ
Sbjct: 61  YINEYIFRDVRFPDVTKSCIGNILTQTSRKVQQRRHFFQ 99

[Close]
BLAST of Csa4G340560.1 vs. NCBI nr
Match: gi|700199347|gb|KGN54505.1| (hypothetical protein Csa_4G340560 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MIISLSATSCRRRRRKVIIPHYGLMYRDVEVTCFAKNLDQNESFGFPRHVRDRCRGKAKQ 60
           MIISLSATSCRRRRRKVIIPHYGLMYRDVEVTCFAKNLDQNESFGFPRHVRDRCRGKAKQ
Sbjct: 1   MIISLSATSCRRRRRKVIIPHYGLMYRDVEVTCFAKNLDQNESFGFPRHVRDRCRGKAKQ 60

Query: 61  YINEYIFRDVRFPDVTKSCIGNILTQTSRKVQQRRHFFQ 100
           YINEYIFRDVRFPDVTKSCIGNILTQTSRKVQQRRHFFQ
Sbjct: 61  YINEYIFRDVRFPDVTKSCIGNILTQTSRKVQQRRHFFQ 99

The following BLAST results are available for this feature:
BLAST of Csa4G340560.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY27_CUCSA9.1e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G340560 PE=4 SV=1[more]
BLAST of Csa4G340560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199347|gb|KGN54505.1|1.3e-50100.00hypothetical protein Csa_4G340560 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G340560Csa4G340560gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G340560.1Csa4G340560.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G340560.1.cds1Csa4G340560.1.cds1CDS