Csa4G285720.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G285720.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 10983483 .. 10983701 (+)
Sequence length	219

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCCAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAATGGTAGAGCTTAG

mRNA sequence

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCCAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAATGGTAGAGCTTAG

Coding sequence (CDS)

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCCAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAATGGTAGAGCTTAG

Protein sequence

MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWNNKRVKSQRNGRA*

Homology

[Close]

BLAST of Csa4G285720.1 vs. TrEMBL
Match: A0A0A0L1S9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G285720 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-36
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60
          MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN
Sbjct: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60

Query: 61 NKRVKSQRNGRA 73
          NKRVKSQRNGRA
Sbjct: 61 NKRVKSQRNGRA 72

[Close]

BLAST of Csa4G285720.1 vs. NCBI nr
Match: gi|700198938|gb|KGN54096.1| (hypothetical protein Csa_4G285720 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-36
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60
          MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN
Sbjct: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60

Query: 61 NKRVKSQRNGRA 73
          NKRVKSQRNGRA
Sbjct: 61 NKRVKSQRNGRA 72

The following BLAST results are available for this feature:

BLAST of Csa4G285720.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1S9_CUCSA	1.6e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G285720 PE=4 SV=1	[more]

BLAST of Csa4G285720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198938\|gb\|KGN54096.1\|	2.3e-36	100.00	hypothetical protein Csa_4G285720 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G285720	Csa4G285720	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa4G285720.1	Csa4G285720.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa4G285720.1.cds1	Csa4G285720.1.cds1	CDS