Csa4G256930.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G256930.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 10416421 .. 10416862 (-)
Sequence length315
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGTTTCACGTATCTGACTTTGAATCCATCAAACCATTGTTGTTGACTTTGGCTCCTCAAGTGAAGACAATGTGATTTTGTCTAATATTCTCAAATGAAAGGCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCATTAG

mRNA sequence

ATGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCATTAG

Coding sequence (CDS)

ATGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCATTAG

Protein sequence

MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH*
Homology
[Close]
BLAST of Csa4G256930.1 vs. TrEMBL
Match: A0A0A0KYY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G256930 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60
           MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA
Sbjct: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60

Query: 61  LPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 105
           LPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH
Sbjct: 61  LPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 104

[Close]
BLAST of Csa4G256930.1 vs. NCBI nr
Match: gi|700198846|gb|KGN54004.1| (hypothetical protein Csa_4G256930 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60
           MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA
Sbjct: 1   MSLPSMQLLQHNQPKPLRHHHLVVPGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHA 60

Query: 61  LPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 105
           LPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH
Sbjct: 61  LPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH 104

The following BLAST results are available for this feature:
BLAST of Csa4G256930.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYY8_CUCSA1.6e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G256930 PE=4 SV=1[more]
BLAST of Csa4G256930.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198846|gb|KGN54004.1|2.3e-53100.00hypothetical protein Csa_4G256930 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G256930Csa4G256930gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G256930.1Csa4G256930.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G256930.1.cds2Csa4G256930.1.cds2CDS
Csa4G256930.1.cds1Csa4G256930.1.cds1CDS