Csa4G097620.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G097620.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 6352077 .. 6352450 (-)
Sequence length261
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGTCTCTTCTCACATCTCCTCCCTCTCTTTCATTCCTCTCTTCTCCATTCTCAATCGTCCTCCCTTGTGCCGCATCTTGTCAGATCTCAGTCTCCTCTTTGTCATCCAAAATCTCATCTTCAGTCTTCTTTTGACCCCTATGACCCCTATTCGTCGTCTGAAATCTCATATGTAGTCTTCTTCTGACTCTTCGTCATCTCCACCCTCTTTCGCACCGATTGTTAGATCTCAGTTCGTCGTCTGTCAGATCTCAGTATCCTCCCTCTCCTCGTCATTCATCTCCCTCTTTAGTCTTCTCAGCCATCTGTCTCTTCAGTTTCTGACGACCATTTGACAGTCATCTTCTTCGTCCGACTCTTCAGCATATGA

mRNA sequence

ATGCCAGTCTCTTCTCACATCTCCTCCCTCTCTTTCATTCCTCTCTTCTCCATTCTCAATCGTCCTCCCTTGTGCCGCATCTTGTCAGATCTCAGTCTCCTCTTTTCTTCTTCTGACTCTTCGTCATCTCCACCCTCTTTCGCACCGATTGTTAGATCTCAGTTCGTCGTCTGTCAGATCTCATCTTCTCAGCCATCTGTCTCTTCAGTTTCTGACGACCATTTGACAGTCATCTTCTTCGTCCGACTCTTCAGCATATGA

Coding sequence (CDS)

ATGCCAGTCTCTTCTCACATCTCCTCCCTCTCTTTCATTCCTCTCTTCTCCATTCTCAATCGTCCTCCCTTGTGCCGCATCTTGTCAGATCTCAGTCTCCTCTTTTCTTCTTCTGACTCTTCGTCATCTCCACCCTCTTTCGCACCGATTGTTAGATCTCAGTTCGTCGTCTGTCAGATCTCATCTTCTCAGCCATCTGTCTCTTCAGTTTCTGACGACCATTTGACAGTCATCTTCTTCGTCCGACTCTTCAGCATATGA

Protein sequence

MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQISSSQPSVSSVSDDHLTVIFFVRLFSI*
Homology
[Close]
BLAST of Csa4G097620.1 vs. TrEMBL
Match: A0A0A0KVM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097620 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI 60
          MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI
Sbjct: 1  MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI 60

Query: 61 SSSQPSVSSVSDDHLTVIFFVRLFSI 87
          SSSQPSVSSVSDDHLTVIFFVRLFSI
Sbjct: 61 SSSQPSVSSVSDDHLTVIFFVRLFSI 86

[Close]
BLAST of Csa4G097620.1 vs. NCBI nr
Match: gi|700198497|gb|KGN53655.1| (hypothetical protein Csa_4G097620 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI 60
          MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI
Sbjct: 1  MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI 60

Query: 61 SSSQPSVSSVSDDHLTVIFFVRLFSI 87
          SSSQPSVSSVSDDHLTVIFFVRLFSI
Sbjct: 61 SSSQPSVSSVSDDHLTVIFFVRLFSI 86

The following BLAST results are available for this feature:
BLAST of Csa4G097620.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVM0_CUCSA1.2e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097620 PE=4 SV=1[more]
BLAST of Csa4G097620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198497|gb|KGN53655.1|1.7e-38100.00hypothetical protein Csa_4G097620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G097620Csa4G097620gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G097620.1Csa4G097620.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G097620.1.cds3Csa4G097620.1.cds3CDS
Csa4G097620.1.cds2Csa4G097620.1.cds2CDS
Csa4G097620.1.cds1Csa4G097620.1.cds1CDS