Csa4G013550.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G013550.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 1966151 .. 1966453 (+)
Sequence length303
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGATGGGCATAGTGAAGAGAGTGATGTTGGGAAGTGAAGGATGGGAAGTATCGGAGCAGGGGCTGGGGTTGCATGGGGATGTCGGCCTATTATACGGCCCACCCCAAGCCGGAAGAAGGTATGATCGGTCTCATTCCAGGGAGCCGTGGGGTAAGGGCGTGACGTTGCTGGTGGGAAAAGCTTTGAAGAGCGAGCCTGGGGTAAGGGATAAGCACCATTTGGTGGACGGAAAGTTTGAGGCCAACGGCGATGATATCTACAGAAAGAACAAAGAATGGGATAATAATGAATGTTAG

mRNA sequence

ATGGTGGAGATGGGCATAGTGAAGAGAGTGATGTTGGGAAGTGAAGGATGGGAAGTATCGGAGCAGGGGCTGGGGTTGCATGGGGATGTCGGCCTATTATACGGCCCACCCCAAGCCGGAAGAAGGTATGATCGGTCTCATTCCAGGGAGCCGTGGGGTAAGGGCGTGACGTTGCTGGTGGGAAAAGCTTTGAAGAGCGAGCCTGGGGTAAGGGATAAGCACCATTTGGTGGACGGAAAGTTTGAGGCCAACGGCGATGATATCTACAGAAAGAACAAAGAATGGGATAATAATGAATGTTAG

Coding sequence (CDS)

ATGGTGGAGATGGGCATAGTGAAGAGAGTGATGTTGGGAAGTGAAGGATGGGAAGTATCGGAGCAGGGGCTGGGGTTGCATGGGGATGTCGGCCTATTATACGGCCCACCCCAAGCCGGAAGAAGGTATGATCGGTCTCATTCCAGGGAGCCGTGGGGTAAGGGCGTGACGTTGCTGGTGGGAAAAGCTTTGAAGAGCGAGCCTGGGGTAAGGGATAAGCACCATTTGGTGGACGGAAAGTTTGAGGCCAACGGCGATGATATCTACAGAAAGAACAAAGAATGGGATAATAATGAATGTTAG

Protein sequence

MVEMGIVKRVMLGSEGWEVSEQGLGLHGDVGLLYGPPQAGRRYDRSHSREPWGKGVTLLVGKALKSEPGVRDKHHLVDGKFEANGDDIYRKNKEWDNNEC*
Homology
[Close]
BLAST of Csa4G013550.1 vs. TrEMBL
Match: A0A0A0KYY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G013550 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.4e-53
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MVEMGIVKRVMLGSEGWEVSEQGLGLHGDVGLLYGPPQAGRRYDRSHSREPWGKGVTLLV 60
           MVEMGIVKRVMLGSEGWEVSEQGLGLHGDVGLLYGPPQAGRRYDRSHSREPWGKGVTLLV
Sbjct: 1   MVEMGIVKRVMLGSEGWEVSEQGLGLHGDVGLLYGPPQAGRRYDRSHSREPWGKGVTLLV 60

Query: 61  GKALKSEPGVRDKHHLVDGKFEANGDDIYRKNKEWDNNEC 101
           GKALKSEPGVRDKHHLVDGKFEANGDDIYRKNKEWDNNEC
Sbjct: 61  GKALKSEPGVRDKHHLVDGKFEANGDDIYRKNKEWDNNEC 100

[Close]
BLAST of Csa4G013550.1 vs. NCBI nr
Match: gi|700197903|gb|KGN53061.1| (hypothetical protein Csa_4G013550 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 4.9e-53
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MVEMGIVKRVMLGSEGWEVSEQGLGLHGDVGLLYGPPQAGRRYDRSHSREPWGKGVTLLV 60
           MVEMGIVKRVMLGSEGWEVSEQGLGLHGDVGLLYGPPQAGRRYDRSHSREPWGKGVTLLV
Sbjct: 1   MVEMGIVKRVMLGSEGWEVSEQGLGLHGDVGLLYGPPQAGRRYDRSHSREPWGKGVTLLV 60

Query: 61  GKALKSEPGVRDKHHLVDGKFEANGDDIYRKNKEWDNNEC 101
           GKALKSEPGVRDKHHLVDGKFEANGDDIYRKNKEWDNNEC
Sbjct: 61  GKALKSEPGVRDKHHLVDGKFEANGDDIYRKNKEWDNNEC 100

The following BLAST results are available for this feature:
BLAST of Csa4G013550.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYY9_CUCSA3.4e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G013550 PE=4 SV=1[more]
BLAST of Csa4G013550.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197903|gb|KGN53061.1|4.9e-53100.00hypothetical protein Csa_4G013550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G013550Csa4G013550gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G013550.1Csa4G013550.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G013550.1.cds1Csa4G013550.1.cds1CDS