Csa3G876040.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G876040.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 36714697 .. 36715121 (+)
Sequence length312
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAAGTGTGCTTCTGCTGAGGGAGAGAGGGCATTTCAGTCCTACTCGAAGGAGGTTATTACTGGTTCCGGTGAGACCGATCTCTATCGCTCTTGGATTTGAGTACGAAAGTTTGATTACTGTTCTTCTTTTGTTTGTTTAGAGGAGGTTTTTTAATGTAAATTCTTCTTCTCGTCGATTTAGGCTGCGGCTACGAGGAGTCCGCAGGAGAGGAACACGAGGCTGGAGGATTTGGAATTTGGCGCGAAAGAAGAAGTAGGTCTGTTTTCTACATTTCTTCTTTGTTTATTCTGTACTTCAGTGTTCGTCGATTGAAATTTTACAATATGATTGATTACCATGTGTACGATTTAACTCTTGCTGCGGTAGACGAATGCACTTGTGTTTCTGAAAGGATAATAGATGAAATCGGAGTTGTGTGA

mRNA sequence

ATGCCAAAGTGTGCTTCTGCTGAGGGAGAGAGGGCATTTCAGTCCTACTCGAAGGAGGTTATTACTGGTTCCGGCTGCGGCTACGAGGAGTCCGCAGGAGAGGAACACGAGGCTGGAGGATTTGGAATTTGGCGCGAAAGAAGAAGTAGGTCTGTTTTCTACATTTCTTCTTTGTTTATTCTGTACTTCAGTGTTCGTCGATTGAAATTTTACAATATGATTGATTACCATGTGTACGATTTAACTCTTGCTGCGGTAGACGAATGCACTTGTGTTTCTGAAAGGATAATAGATGAAATCGGAGTTGTGTGA

Coding sequence (CDS)

ATGCCAAAGTGTGCTTCTGCTGAGGGAGAGAGGGCATTTCAGTCCTACTCGAAGGAGGTTATTACTGGTTCCGGCTGCGGCTACGAGGAGTCCGCAGGAGAGGAACACGAGGCTGGAGGATTTGGAATTTGGCGCGAAAGAAGAAGTAGGTCTGTTTTCTACATTTCTTCTTTGTTTATTCTGTACTTCAGTGTTCGTCGATTGAAATTTTACAATATGATTGATTACCATGTGTACGATTTAACTCTTGCTGCGGTAGACGAATGCACTTGTGTTTCTGAAAGGATAATAGATGAAATCGGAGTTGTGTGA

Protein sequence

MPKCASAEGERAFQSYSKEVITGSGCGYEESAGEEHEAGGFGIWRERRSRSVFYISSLFILYFSVRRLKFYNMIDYHVYDLTLAAVDECTCVSERIIDEIGVV*
Homology
[Close]
BLAST of Csa3G876040.1 vs. TrEMBL
Match: A0A0A0LJ93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G876040 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.3e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MPKCASAEGERAFQSYSKEVITGSGCGYEESAGEEHEAGGFGIWRERRSRSVFYISSLFI 60
           MPKCASAEGERAFQSYSKEVITGSGCGYEESAGEEHEAGGFGIWRERRSRSVFYISSLFI
Sbjct: 1   MPKCASAEGERAFQSYSKEVITGSGCGYEESAGEEHEAGGFGIWRERRSRSVFYISSLFI 60

Query: 61  LYFSVRRLKFYNMIDYHVYDLTLAAVDECTCVSERIIDEIGVV 104
           LYFSVRRLKFYNMIDYHVYDLTLAAVDECTCVSERIIDEIGVV
Sbjct: 61  LYFSVRRLKFYNMIDYHVYDLTLAAVDECTCVSERIIDEIGVV 103

[Close]
BLAST of Csa3G876040.1 vs. NCBI nr
Match: gi|700204948|gb|KGN60081.1| (hypothetical protein Csa_3G876040 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 3.2e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MPKCASAEGERAFQSYSKEVITGSGCGYEESAGEEHEAGGFGIWRERRSRSVFYISSLFI 60
           MPKCASAEGERAFQSYSKEVITGSGCGYEESAGEEHEAGGFGIWRERRSRSVFYISSLFI
Sbjct: 1   MPKCASAEGERAFQSYSKEVITGSGCGYEESAGEEHEAGGFGIWRERRSRSVFYISSLFI 60

Query: 61  LYFSVRRLKFYNMIDYHVYDLTLAAVDECTCVSERIIDEIGVV 104
           LYFSVRRLKFYNMIDYHVYDLTLAAVDECTCVSERIIDEIGVV
Sbjct: 61  LYFSVRRLKFYNMIDYHVYDLTLAAVDECTCVSERIIDEIGVV 103

The following BLAST results are available for this feature:
BLAST of Csa3G876040.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ93_CUCSA2.3e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G876040 PE=4 SV=1[more]
BLAST of Csa3G876040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204948|gb|KGN60081.1|3.2e-52100.00hypothetical protein Csa_3G876040 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G876040Csa3G876040gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G876040.1Csa3G876040.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G876040.1.cds1Csa3G876040.1.cds1CDS
Csa3G876040.1.cds2Csa3G876040.1.cds2CDS