Csa3G390880.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G390880.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 19085210 .. 19085635 (-)
Sequence length249
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAATACCTACAATCAAAAATTCCAAAAATGTCCGTGTGATATATTACTCTCCATTTTTGACATCTAGCACGTGTGATATATTTGGCTATTTTTGTATCGTTTAAATTTGGGTTGTCAAATCTCAACGATTTTTTCAAGATTTTTTGGAAAACGTTCGTTTATATTTTGTACGCGTTCAATTAGATTTGATCGTTAAATTTGGGCAGTCAAATTATTGGCCTGTACTACAGACCAGGCACTGAGACTAGACATCTTGTTCGATACTGGGGGAAACTTTCTAGGTCTCACAGCTACGGTCGTCTAACTGAAAGAGCTAGAAGAAAGTGGGCCCCAGGAGCGAGACCAGAAAATTCCCCGTTATTTGATTACGATAGTTGGAGCACTCTTCGAACGCTCGACAAAATAGAAAAGAGGTTTTGA

mRNA sequence

ATGGAAAAATACCTACAATCAAAAATTCCAAAAATTCAAATTATTGGCCTGTACTACAGACCAGGCACTGAGACTAGACATCTTGTTCGATACTGGGGGAAACTTTCTAGGTCTCACAGCTACGGTCGTCTAACTGAAAGAGCTAGAAGAAAGTGGGCCCCAGGAGCGAGACCAGAAAATTCCCCGTTATTTGATTACGATAGTTGGAGCACTCTTCGAACGCTCGACAAAATAGAAAAGAGGTTTTGA

Coding sequence (CDS)

ATGGAAAAATACCTACAATCAAAAATTCCAAAAATTCAAATTATTGGCCTGTACTACAGACCAGGCACTGAGACTAGACATCTTGTTCGATACTGGGGGAAACTTTCTAGGTCTCACAGCTACGGTCGTCTAACTGAAAGAGCTAGAAGAAAGTGGGCCCCAGGAGCGAGACCAGAAAATTCCCCGTTATTTGATTACGATAGTTGGAGCACTCTTCGAACGCTCGACAAAATAGAAAAGAGGTTTTGA

Protein sequence

MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPENSPLFDYDSWSTLRTLDKIEKRF*
Homology
[Close]
BLAST of Csa3G390880.1 vs. TrEMBL
Match: A0A0A0LAC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G390880 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.2e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN 60
          MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN
Sbjct: 1  MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN 60

Query: 61 SPLFDYDSWSTLRTLDKIEKRF 83
          SPLFDYDSWSTLRTLDKIEKRF
Sbjct: 61 SPLFDYDSWSTLRTLDKIEKRF 82

[Close]
BLAST of Csa3G390880.1 vs. NCBI nr
Match: gi|700202786|gb|KGN57919.1| (hypothetical protein Csa_3G390880 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 4.6e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN 60
          MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN
Sbjct: 1  MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN 60

Query: 61 SPLFDYDSWSTLRTLDKIEKRF 83
          SPLFDYDSWSTLRTLDKIEKRF
Sbjct: 61 SPLFDYDSWSTLRTLDKIEKRF 82

The following BLAST results are available for this feature:
BLAST of Csa3G390880.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAC7_CUCSA3.2e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G390880 PE=4 SV=1[more]
BLAST of Csa3G390880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202786|gb|KGN57919.1|4.6e-41100.00hypothetical protein Csa_3G390880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G390880Csa3G390880gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G390880.1Csa3G390880.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G390880.1.cds2Csa3G390880.1.cds2CDS
Csa3G390880.1.cds1Csa3G390880.1.cds1CDS