Csa3G183310.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G183310.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 12763786 .. 12764016 (+)
Sequence length231
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCGGCTCCCGGCTCCCGTACACTACAGCTTGGACAGAGCGCGCGCTTGCGAGAGGAGACGGCTACCGGCGCGGACGCGGAAGAAAAGCTTCACACGGCGGCTAGGCTTCGTCGGACGATCGGCTGTGCGCGGCTGATGGAGATAAATTCGACGAACGATCGGCTGGGTTTCGAAGAAGACCTTTCTCTTTTTTTTAATTGCACTAAATTTGAGGACCATTTATAA

mRNA sequence

ATGGGATCGGCTCCCGGCTCCCGTACACTACAGCTTGGACAGAGCGCGCGCTTGCGAGAGGAGACGGCTACCGGCGCGGACGCGGAAGAAAAGCTTCACACGGCGGCTAGGCTTCGTCGGACGATCGGCTGTGCGCGGCTGATGGAGATAAATTCGACGAACGATCGGCTGGGTTTCGAAGAAGACCTTTCTCTTTTTTTTAATTGCACTAAATTTGAGGACCATTTATAA

Coding sequence (CDS)

ATGGGATCGGCTCCCGGCTCCCGTACACTACAGCTTGGACAGAGCGCGCGCTTGCGAGAGGAGACGGCTACCGGCGCGGACGCGGAAGAAAAGCTTCACACGGCGGCTAGGCTTCGTCGGACGATCGGCTGTGCGCGGCTGATGGAGATAAATTCGACGAACGATCGGCTGGGTTTCGAAGAAGACCTTTCTCTTTTTTTTAATTGCACTAAATTTGAGGACCATTTATAA

Protein sequence

MGSAPGSRTLQLGQSARLREETATGADAEEKLHTAARLRRTIGCARLMEINSTNDRLGFEEDLSLFFNCTKFEDHL*
Homology
[Close]
BLAST of Csa3G183310.1 vs. TrEMBL
Match: A0A0A0L9V1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183310 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.1e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MGSAPGSRTLQLGQSARLREETATGADAEEKLHTAARLRRTIGCARLMEINSTNDRLGFE 60
          MGSAPGSRTLQLGQSARLREETATGADAEEKLHTAARLRRTIGCARLMEINSTNDRLGFE
Sbjct: 1  MGSAPGSRTLQLGQSARLREETATGADAEEKLHTAARLRRTIGCARLMEINSTNDRLGFE 60

Query: 61 EDLSLFFNCTKFEDHL 77
          EDLSLFFNCTKFEDHL
Sbjct: 61 EDLSLFFNCTKFEDHL 76

[Close]
BLAST of Csa3G183310.1 vs. NCBI nr
Match: gi|700202264|gb|KGN57397.1| (hypothetical protein Csa_3G183310 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MGSAPGSRTLQLGQSARLREETATGADAEEKLHTAARLRRTIGCARLMEINSTNDRLGFE 60
          MGSAPGSRTLQLGQSARLREETATGADAEEKLHTAARLRRTIGCARLMEINSTNDRLGFE
Sbjct: 1  MGSAPGSRTLQLGQSARLREETATGADAEEKLHTAARLRRTIGCARLMEINSTNDRLGFE 60

Query: 61 EDLSLFFNCTKFEDHL 77
          EDLSLFFNCTKFEDHL
Sbjct: 61 EDLSLFFNCTKFEDHL 76

The following BLAST results are available for this feature:
BLAST of Csa3G183310.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9V1_CUCSA7.1e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183310 PE=4 SV=1[more]
BLAST of Csa3G183310.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202264|gb|KGN57397.1|1.0e-34100.00hypothetical protein Csa_3G183310 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G183310Csa3G183310gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G183310.1Csa3G183310.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G183310.1.cds1Csa3G183310.1.cds1CDS