Csa3G135090.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G135090.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 9175758 .. 9175922 (+)
Sequence length	165

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCGGAGGAGGAGGATGAGGATGAGGAAGAGGAGAGGGAGGGGCTATGGAGAGAAATGGGGGAGGAGGTGATTGGGATATTTAAGAAGGTTGGGAACACCATCCATCTCACGTGCATGGAATCTGAGTTAGGGCATATAGCACCGAATATTCCATTTTGA

mRNA sequence

ATGGGAGCGGAGGAGGAGGATGAGGATGAGGAAGAGGAGAGGGAGGGGCTATGGAGAGAAATGGGGGAGGAGGTGATTGGGATATTTAAGAAGGTTGGGAACACCATCCATCTCACGTGCATGGAATCTGAGTTAGGGCATATAGCACCGAATATTCCATTTTGA

Coding sequence (CDS)

ATGGGAGCGGAGGAGGAGGATGAGGATGAGGAAGAGGAGAGGGAGGGGCTATGGAGAGAAATGGGGGAGGAGGTGATTGGGATATTTAAGAAGGTTGGGAACACCATCCATCTCACGTGCATGGAATCTGAGTTAGGGCATATAGCACCGAATATTCCATTTTGA

Protein sequence

MGAEEEDEDEEEEREGLWREMGEEVIGIFKKVGNTIHLTCMESELGHIAPNIPF*

Homology

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BLAST of Csa3G135090.1 vs. TrEMBL
Match: A0A0A0L9U9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G135090 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 1  MGAEEEDEDEEEEREGLWREMGEEVIGIFKKVGNTIHLTCMESELGHIAPNIPF 55
          MGAEEEDEDEEEEREGLWREMGEEVIGIFKKVGNTIHLTCMESELGHIAPNIPF
Sbjct: 1  MGAEEEDEDEEEEREGLWREMGEEVIGIFKKVGNTIHLTCMESELGHIAPNIPF 54

[Close]

BLAST of Csa3G135090.1 vs. NCBI nr
Match: gi|700201728|gb|KGN56861.1| (hypothetical protein Csa_3G135090 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 1  MGAEEEDEDEEEEREGLWREMGEEVIGIFKKVGNTIHLTCMESELGHIAPNIPF 55
          MGAEEEDEDEEEEREGLWREMGEEVIGIFKKVGNTIHLTCMESELGHIAPNIPF
Sbjct: 1  MGAEEEDEDEEEEREGLWREMGEEVIGIFKKVGNTIHLTCMESELGHIAPNIPF 54

The following BLAST results are available for this feature:

BLAST of Csa3G135090.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9U9_CUCSA	1.5e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G135090 PE=4 SV=1	[more]

BLAST of Csa3G135090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201728\|gb\|KGN56861.1\|	2.2e-23	100.00	hypothetical protein Csa_3G135090 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G135090	Csa3G135090	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa3G135090.1	Csa3G135090.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G135090.1.cds1	Csa3G135090.1.cds1	CDS