Csa2G386170.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G386170.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 20225426 .. 20225824 (-)
Sequence length300
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACAAAGTTGGAAAGGGAAGGAGAGCGTTAAAGAATTTGCGGCTGCAGAGGTCTATGGCAGGGGAAAAGTAGTGCAGAAAATGAAAACGAAGAGAGTGGGGAAATCAGTGCCGACCGGAATAATGCAAAGAAGTGGAAGCGGGAGCGTCGGTGGATAACATGATAAGGATCGGTTTTGAACGGAAAACAGATAGGTGGGGAATCGAAGGCATCTGGCTTGGAAGAAAAATCATGGTACGAGGAGAGGACAGGAGAAGAGAAGAAGAGAGGAAGAGAATAAGAGGATTGGGGCTATGGCTCCATCTGGCCGGGGGATGAAGACGCCTCTTCCGCTTCAAATCCTCACCCAGAGGCTGCCGCTTATTGAAAAATAAACTTTTGAGACAACAAGGGTC

mRNA sequence

ATGAAACAAAGTTGGAAAGGGAAGGAGAGCGTTAAAGAATTTGCGGCTGCAGAGGTCTATGGCAGGGGAAAAGTAGTGCAGAAAATGAAAACGAAGAGAGTGGGGAAATCAGTGCCGACCGGAATAATGCAAAGAAGTGGAAGCGGGAGCAAAAATCATGGTACGAGGAGAGGACAGGAGAAGAGAAGAAGAGAGGAAGAGAATAAGAGGATTGGGGCTATGGCTCCATCTGGCCGGGGGATGAAGACGCCTCTTCCGCTTCAAATCCTCACCCAGAGGCTGCCGCTTATTGAAAAATAA

Coding sequence (CDS)

ATGAAACAAAGTTGGAAAGGGAAGGAGAGCGTTAAAGAATTTGCGGCTGCAGAGGTCTATGGCAGGGGAAAAGTAGTGCAGAAAATGAAAACGAAGAGAGTGGGGAAATCAGTGCCGACCGGAATAATGCAAAGAAGTGGAAGCGGGAGCAAAAATCATGGTACGAGGAGAGGACAGGAGAAGAGAAGAAGAGAGGAAGAGAATAAGAGGATTGGGGCTATGGCTCCATCTGGCCGGGGGATGAAGACGCCTCTTCCGCTTCAAATCCTCACCCAGAGGCTGCCGCTTATTGAAAAATAA

Protein sequence

MKQSWKGKESVKEFAAAEVYGRGKVVQKMKTKRVGKSVPTGIMQRSGSGSKNHGTRRGQEKRRREEENKRIGAMAPSGRGMKTPLPLQILTQRLPLIEK*
Homology
[Close]
BLAST of Csa2G386170.1 vs. TrEMBL
Match: A0A0A0LPX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G386170 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.3e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MKQSWKGKESVKEFAAAEVYGRGKVVQKMKTKRVGKSVPTGIMQRSGSGSKNHGTRRGQE 60
           MKQSWKGKESVKEFAAAEVYGRGKVVQKMKTKRVGKSVPTGIMQRSGSGSKNHGTRRGQE
Sbjct: 1   MKQSWKGKESVKEFAAAEVYGRGKVVQKMKTKRVGKSVPTGIMQRSGSGSKNHGTRRGQE 60

Query: 61  KRRREEENKRIGAMAPSGRGMKTPLPLQILTQRLPLIEK 100
           KRRREEENKRIGAMAPSGRGMKTPLPLQILTQRLPLIEK
Sbjct: 61  KRRREEENKRIGAMAPSGRGMKTPLPLQILTQRLPLIEK 99

[Close]
BLAST of Csa2G386170.1 vs. NCBI nr
Match: gi|700207930|gb|KGN63049.1| (hypothetical protein Csa_2G386170 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 4.7e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MKQSWKGKESVKEFAAAEVYGRGKVVQKMKTKRVGKSVPTGIMQRSGSGSKNHGTRRGQE 60
           MKQSWKGKESVKEFAAAEVYGRGKVVQKMKTKRVGKSVPTGIMQRSGSGSKNHGTRRGQE
Sbjct: 1   MKQSWKGKESVKEFAAAEVYGRGKVVQKMKTKRVGKSVPTGIMQRSGSGSKNHGTRRGQE 60

Query: 61  KRRREEENKRIGAMAPSGRGMKTPLPLQILTQRLPLIEK 100
           KRRREEENKRIGAMAPSGRGMKTPLPLQILTQRLPLIEK
Sbjct: 61  KRRREEENKRIGAMAPSGRGMKTPLPLQILTQRLPLIEK 99

The following BLAST results are available for this feature:
BLAST of Csa2G386170.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPX5_CUCSA3.3e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G386170 PE=4 SV=1[more]
BLAST of Csa2G386170.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207930|gb|KGN63049.1|4.7e-48100.00hypothetical protein Csa_2G386170 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G386170Csa2G386170gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G386170.1Csa2G386170.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G386170.1.utr3p1Csa2G386170.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G386170.1.cds2Csa2G386170.1.cds2CDS
Csa2G386170.1.cds1Csa2G386170.1.cds1CDS