Csa2G336750.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G336750.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 15199345 .. 15199985 (-)
Sequence length	372

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCACCGATGGATAGGGGTAAGTGTTTATTATGTTTTCCAATTGCAACAGAAGGCTACACGAAGATTACCTAAAAAAAAAATTGACATTTATTAGGGAGAAAAATGTATTTCTCACAAATTTGAAACCGCCTACCTATGTAGGTTGCACAAATTAAGCATGATGGATTAAGTTGCATTTGATAATTATTTGGAGTCCGAAGCCGTACGACTGGGACGAGTTTAAAGCCCTTCTTGTCTTCTTTTTATCTCGGCTCTGTATTGCGATCACTGTCACTCACTTCCCTCCGCCTTTGTGTGCCATTTCTGGACTCGCGCTCGCCTTCCAACTCTACCTTTTCCGGCACTGGGTTCCATTCCCGGCGACAGTCTTCAAGACAATTATTGTATTCTCTCTCTTCCCTTTCTCCTGCAATGGCTGGCCCTTTTTCTCTTCAGTTTTTTTTGTCTCTTTCTTATCTTTGCATGAAGGTGTCTGTGGTTTCTAGGGTATTTCATAGTTTTCATGCATCTCTTTAGAGCTCAGTATGTTTTGATCAGATTTTTCTCATCTCGGGAATGCTTCTTTGTGTTGTTCTGAGAATCCTCTCCCGTTCTACGAGCTGCATGGCTTTCGATTATTGGATCATTGTGCTTGA

mRNA sequence

ATGAAGCCACCGATGGATAGGGTCCGAAGCCGTACGACTGGGACGAGTTTAAAGCCCTTCTTGTCTTCTTTTTATCTCGGCTCTGTATTGCGATCACTGTCACTCACTTCCCTCCGCCTTTGTGTGCCATTTCTGGACTCGCGCTCGCCTTCCAACTCTACCTTTTCCGGCACTGGGTTCCATTCCCGGCGACAGTCTTCAAGACAATTATTGTATTCTCTCTCTTCCCTTTCTCCTGCAATGGCTGGCCCTTTTTCTCTTCAGTTTTTTTTGTCTCTTTCTTATCTTTGCATGAAGGTGTCTGTGGTTTCTAGGAATCCTCTCCCGTTCTACGAGCTGCATGGCTTTCGATTATTGGATCATTGTGCTTGA

Coding sequence (CDS)

ATGAAGCCACCGATGGATAGGGTCCGAAGCCGTACGACTGGGACGAGTTTAAAGCCCTTCTTGTCTTCTTTTTATCTCGGCTCTGTATTGCGATCACTGTCACTCACTTCCCTCCGCCTTTGTGTGCCATTTCTGGACTCGCGCTCGCCTTCCAACTCTACCTTTTCCGGCACTGGGTTCCATTCCCGGCGACAGTCTTCAAGACAATTATTGTATTCTCTCTCTTCCCTTTCTCCTGCAATGGCTGGCCCTTTTTCTCTTCAGTTTTTTTTGTCTCTTTCTTATCTTTGCATGAAGGTGTCTGTGGTTTCTAGGAATCCTCTCCCGTTCTACGAGCTGCATGGCTTTCGATTATTGGATCATTGTGCTTGA

Protein sequence

MKPPMDRVRSRTTGTSLKPFLSSFYLGSVLRSLSLTSLRLCVPFLDSRSPSNSTFSGTGFHSRRQSSRQLLYSLSSLSPAMAGPFSLQFFLSLSYLCMKVSVVSRNPLPFYELHGFRLLDHCA*

Homology

[Close]

BLAST of Csa2G336750.1 vs. TrEMBL
Match: A0A0A0LKA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336750 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MKPPMDRVRSRTTGTSLKPFLSSFYLGSVLRSLSLTSLRLCVPFLDSRSPSNSTFSGTGF 60
           MKPPMDRVRSRTTGTSLKPFLSSFYLGSVLRSLSLTSLRLCVPFLDSRSPSNSTFSGTGF
Sbjct: 1   MKPPMDRVRSRTTGTSLKPFLSSFYLGSVLRSLSLTSLRLCVPFLDSRSPSNSTFSGTGF 60

Query: 61  HSRRQSSRQLLYSLSSLSPAMAGPFSLQFFLSLSYLCMKVSVVSRNPLPFYELHGFRLLD 120
           HSRRQSSRQLLYSLSSLSPAMAGPFSLQFFLSLSYLCMKVSVVSRNPLPFYELHGFRLLD
Sbjct: 61  HSRRQSSRQLLYSLSSLSPAMAGPFSLQFFLSLSYLCMKVSVVSRNPLPFYELHGFRLLD 120

Query: 121 HCA 124
           HCA
Sbjct: 121 HCA 123

[Close]

BLAST of Csa2G336750.1 vs. NCBI nr
Match: gi|700207109|gb|KGN62228.1| (hypothetical protein Csa_2G336750 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 2.4e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MKPPMDRVRSRTTGTSLKPFLSSFYLGSVLRSLSLTSLRLCVPFLDSRSPSNSTFSGTGF 60
           MKPPMDRVRSRTTGTSLKPFLSSFYLGSVLRSLSLTSLRLCVPFLDSRSPSNSTFSGTGF
Sbjct: 1   MKPPMDRVRSRTTGTSLKPFLSSFYLGSVLRSLSLTSLRLCVPFLDSRSPSNSTFSGTGF 60

Query: 61  HSRRQSSRQLLYSLSSLSPAMAGPFSLQFFLSLSYLCMKVSVVSRNPLPFYELHGFRLLD 120
           HSRRQSSRQLLYSLSSLSPAMAGPFSLQFFLSLSYLCMKVSVVSRNPLPFYELHGFRLLD
Sbjct: 61  HSRRQSSRQLLYSLSSLSPAMAGPFSLQFFLSLSYLCMKVSVVSRNPLPFYELHGFRLLD 120

Query: 121 HCA 124
           HCA
Sbjct: 121 HCA 123

The following BLAST results are available for this feature:

BLAST of Csa2G336750.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKA0_CUCSA	1.7e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336750 PE=4 SV=1	[more]

BLAST of Csa2G336750.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207109\|gb\|KGN62228.1\|	2.4e-62	100.00	hypothetical protein Csa_2G336750 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G336750	Csa2G336750	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa2G336750.1	Csa2G336750.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa2G336750.1.cds3	Csa2G336750.1.cds3	CDS
Csa2G336750.1.cds2	Csa2G336750.1.cds2	CDS
Csa2G336750.1.cds1	Csa2G336750.1.cds1	CDS