Csa2G258650.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G258650.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 12552004 .. 12552300 (+)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAAGGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGGCACAGTCGCTGCTGGCAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGACCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

mRNA sequence

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAAGGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGGCACAGTCGCTGCTGGCAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGACCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

Coding sequence (CDS)

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAAGGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGGCACAGTCGCTGCTGGCAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGACCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

Protein sequence

MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVVKHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS*
Homology
[Close]
BLAST of Csa2G258650.1 vs. TrEMBL
Match: A0A0A0LLE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258650 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 7.9e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60
          MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV
Sbjct: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60

Query: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 99
          KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS
Sbjct: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 98

[Close]
BLAST of Csa2G258650.1 vs. NCBI nr
Match: gi|700206750|gb|KGN61869.1| (hypothetical protein Csa_2G258650 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60
          MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV
Sbjct: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60

Query: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 99
          KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS
Sbjct: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 98

The following BLAST results are available for this feature:
BLAST of Csa2G258650.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLE3_CUCSA7.9e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258650 PE=4 SV=1[more]
BLAST of Csa2G258650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206750|gb|KGN61869.1|1.1e-46100.00hypothetical protein Csa_2G258650 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G258650Csa2G258650gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G258650.1Csa2G258650.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G258650.1.cds1Csa2G258650.1.cds1CDS