Csa2G154090.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G154090.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 9137790 .. 9139241 (-)
Sequence length474
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTCTTTCTTTTCAAGAATCTTGAACGCTTACTCATCAAATTTTACTCTCCAAGTTAGTACTTTTGTCGTCATTATTCTTTTTAATTGCCTCATTCTTGCACTCTTTTGTAATTAATTTCTCTCAAGGATTTCAAGCATTAATCTTGCTTTCTTTTTCTTTTTCTTTTCTTTTTTCTGTTTGATTATTAGGGGAAGAGTTACCCTTGATTCGCAAATTTGGAGTTAGGTATGCGGTATTTGAGGATTTCGGAAACGTTGATTTTGAAATCTTTGTTTCAATTGATTCACTACAATTTAGACACATTATACAAGAGTGTCGTGATTATATGGGTACTATATACATATAATTCTATCTTTTTTTTTTCTTTTTCTTACTATATCCCAAATTACTTATTTGTAAGAATATGATTTATGAGGTTTTTTTCCTAATAATCTGTTCTTGTATTCTGCAGTTCGTGTTACTCCAACACATTCACATGTTAGGTTCTGTAATGAAGTTAAGGAGATCATTTTTAAGAAAGAGGTATTGTCTTTTTGTTTTTCCTTCTTTTTGGGTTTCAAAACTCAAGTCAAATTTTTTAATATGACCAAAGGAAAAAAGGTTTCTAAAAACAAAGTGATGTTTGAAAAAATAAAAAAAAAAAATTAAAAAACTTCCTCACTAATAACAATTTTGTTTTATTTTTCTATTTTTAATTTACAAATCTATCTTTAGCATGGATTTCACTTTTTTTTCAAGAAACATTTGTATTATAATATACAAAGACAAGATTTTGAAAATGAGAAAAACTAGTTTCAAAACACTTGTTCTTTTTTTCCGGAAAATTAGCTTTAATTAAATTAACAAAGATTGATATCTTTTTATTTATTTATTTTATAATTTGATTAAGAATAAGATGATAGCAATGACATTGTTAAGAAGTGCTTTTTTTTAATAGCATGTTAAAGAAAATTTCTAGAAGTAAATTACACAGTTGTAAAAAACCAAGGGTTAGCATATAAGGCCAGAGATTTTAAAAAATTTCTTTTTTATCAAAAACTGACTAAGAAATCAAATGTTTAGTTAAGAAAGAGGAAAAACTCATGCTATATAAGGTAAGAAGTAAACCAACAAAAGTTTAAAAAACTAAAAGCCAAATTATTGACGAGGAAGAGCATAAAGATTTGAATATAAAATTACATTGTATAAAACACAGGACAAATTTAATATGATTTATGATTAGTTGATGTGATTTTGTATAGGAAGGAGAATGCATAATTGAAGGTGTTGGGAAAGGGCCAGCAGTTGAATTTCTAATACCTGTTTATCCAACTCATGTTTATTATAACATCACTTTTCAAGCACAGAGAGTATGGTTGTTCAAGTCAGCTGATAAATGTGGTACTTTCATTATTGCTCCTGTTGGACTCTTTGCTCAATTTGCCATCTATTTTCCTCTAGGCTGA

mRNA sequence

ATGTCTCTCTTTCTTTTCAAGAATCTTGAACGCTTACTCATCAAATTTTACTCTCCAAGGGAAGAGTTACCCTTGATTCGCAAATTTGGAGTTAGGTATGCGGTATTTGAGGATTTCGGAAACGTTGATTTTGAAATCTTTGTTTCAATTGATTCACTACAATTTAGACACATTATACAAGAGTGTCGTGATTATATGGTTCGTGTTACTCCAACACATTCACATGTTAGGTTCTGTAATGAAGTTAAGGAGATCATTTTTAAGAAAGAGGAAGGAGAATGCATAATTGAAGGTGTTGGGAAAGGGCCAGCAGTTGAATTTCTAATACCTGTTTATCCAACTCATGTTTATTATAACATCACTTTTCAAGCACAGAGAGTATGGTTGTTCAAGTCAGCTGATAAATGTGGTACTTTCATTATTGCTCCTGTTGGACTCTTTGCTCAATTTGCCATCTATTTTCCTCTAGGCTGA

Coding sequence (CDS)

ATGTCTCTCTTTCTTTTCAAGAATCTTGAACGCTTACTCATCAAATTTTACTCTCCAAGGGAAGAGTTACCCTTGATTCGCAAATTTGGAGTTAGGTATGCGGTATTTGAGGATTTCGGAAACGTTGATTTTGAAATCTTTGTTTCAATTGATTCACTACAATTTAGACACATTATACAAGAGTGTCGTGATTATATGGTTCGTGTTACTCCAACACATTCACATGTTAGGTTCTGTAATGAAGTTAAGGAGATCATTTTTAAGAAAGAGGAAGGAGAATGCATAATTGAAGGTGTTGGGAAAGGGCCAGCAGTTGAATTTCTAATACCTGTTTATCCAACTCATGTTTATTATAACATCACTTTTCAAGCACAGAGAGTATGGTTGTTCAAGTCAGCTGATAAATGTGGTACTTTCATTATTGCTCCTGTTGGACTCTTTGCTCAATTTGCCATCTATTTTCCTCTAGGCTGA

Protein sequence

MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG*
Homology
[Close]
BLAST of Csa2G154090.1 vs. TrEMBL
Match: A0A0A0LLD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G154090 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 6.2e-86
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 

Query: 1   MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 60
           MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ
Sbjct: 1   MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 60

Query: 61  ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI 120
           ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI
Sbjct: 61  ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI 120

Query: 121 TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG 158
           TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG
Sbjct: 121 TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG 157

[Close]
BLAST of Csa2G154090.1 vs. TrEMBL
Match: A0A0A0K7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.5e-60
Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 1 

Query: 1   MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 60
           +S F+ K L+RL++KF SPR ELPLIRKF +R AV ED GN+D E FVSIDS QFR ++ 
Sbjct: 88  LSFFVLKLLDRLVLKFSSPRNELPLIRKFRMRCAVKEDMGNIDLETFVSIDSQQFRRVVT 147

Query: 61  ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI 120
            CRDY VRVT THSHVRF NE+KE IF +E GECI+EGVGKG   EFLIP+YPTHV+YNI
Sbjct: 148 GCRDYFVRVTTTHSHVRFSNEIKEFIFAREGGECIMEGVGKGKGTEFLIPIYPTHVFYNI 207

Query: 121 TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG 158
           TF+A+RVWLFKS DK GTFI+APVGLFA+F IYFPLG
Sbjct: 208 TFRAKRVWLFKSIDKLGTFIVAPVGLFARFVIYFPLG 244

[Close]
BLAST of Csa2G154090.1 vs. TrEMBL
Match: A0A0A0KCY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002350 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.5e-19
Identity = 61/160 (38.12%), Postives = 91/160 (56.88%), Query Frame = 1 

Query: 1   MSLFLFKN--LERLLIKFYSPR---EELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQF 60
           M LFL     L ++ ++F +PR   ++  L   F +  +  ED G +D+ IF SIDSL  
Sbjct: 1   MILFLHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVL 60

Query: 61  RHIIQECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTH 120
           R I  E  DY   VT T+S V+F    KEI   KE  ECII GV       F + + P  
Sbjct: 61  RFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKI 120

Query: 121 VYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFP 156
           ++ ++  +++R+W+FKS +   + I+AP+GL+AQF +YFP
Sbjct: 121 LFRDLANKSERIWMFKSPNSY-SIIVAPIGLYAQFCVYFP 159

[Close]
BLAST of Csa2G154090.1 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.6e-17
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 1 

Query: 40  GNVDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGV 99
           G++++  FVSIDS  FR I  E     V VT T+S V F N+ KEI F KEE +C+I GV
Sbjct: 131 GDIEYTTFVSIDSRDFRRIASELNSRSVSVTFTNSRVNFFNKNKEITFSKEENQCVIGGV 190

Query: 100 GKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFP 156
            +G    F+I V+P   + +++ Q++RVW     D     +I P+GL+ QF +YFP
Sbjct: 191 EEGEEFRFIITVHPLVFFLDLSSQSKRVWFLMQRD-FSCIMILPLGLWQQFWVYFP 245

[Close]
BLAST of Csa2G154090.1 vs. TrEMBL
Match: A0A0A0KNE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G469020 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 1 

Query: 42  VDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGK 101
           +D++ FVSIDS  F+ ++ E   + V V  + S   F N+ K+IIF KEE +CII G+ K
Sbjct: 18  IDYKAFVSIDSKDFKRVVLEINAHSVFVNLSDSEATFSNDNKKIIFTKEERKCIIGGIKK 77

Query: 102 GPAVEFLIPVYPTHVYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYF 155
           G   E LI ++P   + ++++QAQR+WLF   D   T ++ P GL+ QF +YF
Sbjct: 78  GKEYEVLITLHPLVFFLDLSYQAQRLWLFIQKD-FSTILVFPSGLWTQFWVYF 129

[Close]
BLAST of Csa2G154090.1 vs. NCBI nr
Match: gi|778674138|ref|XP_011650141.1| (PREDICTED: uncharacterized protein LOC101209763 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 8.9e-86
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 

Query: 1   MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 60
           MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ
Sbjct: 103 MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 162

Query: 61  ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI 120
           ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI
Sbjct: 163 ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI 222

Query: 121 TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG 158
           TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG
Sbjct: 223 TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG 259

[Close]
BLAST of Csa2G154090.1 vs. NCBI nr
Match: gi|700206403|gb|KGN61522.1| (hypothetical protein Csa_2G154090 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 8.9e-86
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 

Query: 1   MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 60
           MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ
Sbjct: 1   MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 60

Query: 61  ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI 120
           ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI
Sbjct: 61  ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI 120

Query: 121 TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG 158
           TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG
Sbjct: 121 TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG 157

[Close]
BLAST of Csa2G154090.1 vs. NCBI nr
Match: gi|659114864|ref|XP_008457262.1| (PREDICTED: uncharacterized protein LOC103496987 [Cucumis melo])

HSP 1 Score: 309.3 bits (791), Expect = 3.9e-81
Identity = 148/157 (94.27%), Postives = 152/157 (96.82%), Query Frame = 1 

Query: 1   MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 60
           MS+F+FKNLERLLIKFYSPR+ELPLIRKF VRYAV+EDFGNVDFEIFVSIDSLQFRHIIQ
Sbjct: 90  MSVFVFKNLERLLIKFYSPRDELPLIRKFEVRYAVYEDFGNVDFEIFVSIDSLQFRHIIQ 149

Query: 61  ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI 120
           ECRDYMVRVTPTHSHVRFCNEVKE IF KE GECIIEGVGKGPAVEFLIPVYPTHVYYNI
Sbjct: 150 ECRDYMVRVTPTHSHVRFCNEVKEFIFAKEAGECIIEGVGKGPAVEFLIPVYPTHVYYNI 209

Query: 121 TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG 158
           TFQAQRVWLFKS DKCGTFIIAPVGLFAQFAIYFPLG
Sbjct: 210 TFQAQRVWLFKSVDKCGTFIIAPVGLFAQFAIYFPLG 246

[Close]
BLAST of Csa2G154090.1 vs. NCBI nr
Match: gi|700190431|gb|KGN45635.1| (hypothetical protein Csa_6G002300 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 6.4e-60
Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 1 

Query: 1   MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 60
           +S F+ K L+RL++KF SPR ELPLIRKF +R AV ED GN+D E FVSIDS QFR ++ 
Sbjct: 88  LSFFVLKLLDRLVLKFSSPRNELPLIRKFRMRCAVKEDMGNIDLETFVSIDSQQFRRVVT 147

Query: 61  ECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYYNI 120
            CRDY VRVT THSHVRF NE+KE IF +E GECI+EGVGKG   EFLIP+YPTHV+YNI
Sbjct: 148 GCRDYFVRVTTTHSHVRFSNEIKEFIFAREGGECIMEGVGKGKGTEFLIPIYPTHVFYNI 207

Query: 121 TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPLG 158
           TF+A+RVWLFKS DK GTFI+APVGLFA+F IYFPLG
Sbjct: 208 TFRAKRVWLFKSIDKLGTFIVAPVGLFARFVIYFPLG 244

[Close]
BLAST of Csa2G154090.1 vs. NCBI nr
Match: gi|659117589|ref|XP_008458681.1| (PREDICTED: uncharacterized protein LOC103498009 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 4.3e-48
Identity = 102/156 (65.38%), Postives = 117/156 (75.00%), Query Frame = 1 

Query: 2   SLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQE 61
           S FL   L+ L++KFYSPR E PLIRKFG   A  E+  N+DFE FVSIDSLQFR II++
Sbjct: 91  SFFLLPPLDHLVLKFYSPRNESPLIRKFGKVNAAKENLRNIDFETFVSIDSLQFRRIIKK 150

Query: 62  CRDYMVRVTPTHSHVRFCNEVKEIIFKKE-EGECIIEGVGKGPAVEFLIPVYPTHVYYNI 121
           CRDY V VTP HS V+F NEV++ IF KE  GECI EG       EFLIP YP HV+ NI
Sbjct: 151 CRDYFVSVTPRHSDVKFSNEVRDFIFPKEGAGECIAEG-----KTEFLIPTYPFHVFNNI 210

Query: 122 TFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFPL 157
            FQ++RVWLFKS DK GTFIIAPVGLFAQFAIY+P+
Sbjct: 211 GFQSKRVWLFKSVDKLGTFIIAPVGLFAQFAIYYPV 241

The following BLAST results are available for this feature:
BLAST of Csa2G154090.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLD1_CUCSA6.2e-86100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G154090 PE=4 SV=1[more]
A0A0A0K7E0_CUCSA4.5e-6071.34Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1[more]
A0A0A0KCY3_CUCSA8.5e-1938.13Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002350 PE=4 SV=1[more]
A0A0A0K9W8_CUCSA3.6e-1742.24Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1[more]
A0A0A0KNE7_CUCSA1.4e-1641.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G469020 PE=4 SV=1[more]
BLAST of Csa2G154090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674138|ref|XP_011650141.1|8.9e-86100.00PREDICTED: uncharacterized protein LOC101209763 [Cucumis sativus][more]
gi|700206403|gb|KGN61522.1|8.9e-86100.00hypothetical protein Csa_2G154090 [Cucumis sativus][more]
gi|659114864|ref|XP_008457262.1|3.9e-8194.27PREDICTED: uncharacterized protein LOC103496987 [Cucumis melo][more]
gi|700190431|gb|KGN45635.1|6.4e-6071.34hypothetical protein Csa_6G002300 [Cucumis sativus][more]
gi|659117589|ref|XP_008458681.1|4.3e-4865.38PREDICTED: uncharacterized protein LOC103498009 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G154090Csa2G154090gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G154090.1Csa2G154090.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G154090.1.cds4Csa2G154090.1.cds4CDS
Csa2G154090.1.cds3Csa2G154090.1.cds3CDS
Csa2G154090.1.cds2Csa2G154090.1.cds2CDS
Csa2G154090.1.cds1Csa2G154090.1.cds1CDS