Csa2G128620.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G128620.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 8340750 .. 8341123 (-)
Sequence length255
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGAGTCAAACCTTTTCGAAAGGGGGGAAAAGAAACGTTGATGTCAGAGTGTTTGGGGATGCCCAGGTTGCTAAGACCAAGTTCCAGAAGTTGCCAAACGTCGTGGGTTTGCCGATGGTCGCAGTCGGCTAAAGAGGTTTCGTGGATTTGCCGAGTGTTTGGGGTCGCGCAAGATAGAAGATGAAGCTGGCGTCTGTTGATACCGTGTAAGGATTCCCTGTCGCAAAATGTGGCCTCGCCGGAGAAAGAAAAGAGAAGAAGGGCAGGGAAGGGAATGAAGGCGTGGGAGGAGCTGGTACGGGGTGAAAACGCAGGGGAGGGGAGAGAGAGGGACTAGGTTTTCTAATCATTTGTTTTTTTCTTATTTT

mRNA sequence

ATGGGTAAGAGTCAAACCTTTTCGAAAGGGGGGAAAAGAAACGTTGATGTCAGAGTGTTTGGGGATGCCCAGGTTGCTAAGACCAAGTTCCAGAAGTTGCCAAACGTCGTGGGTTTGCCGATGGTCGCAGATTCCCTGTCGCAAAATGTGGCCTCGCCGGAGAAAGAAAAGAGAAGAAGGGCAGGGAAGGGAATGAAGGCGTGGGAGGAGCTGGTACGGGGTGAAAACGCAGGGGAGGGGAGAGAGAGGGACTAG

Coding sequence (CDS)

ATGGGTAAGAGTCAAACCTTTTCGAAAGGGGGGAAAAGAAACGTTGATGTCAGAGTGTTTGGGGATGCCCAGGTTGCTAAGACCAAGTTCCAGAAGTTGCCAAACGTCGTGGGTTTGCCGATGGTCGCAGATTCCCTGTCGCAAAATGTGGCCTCGCCGGAGAAAGAAAAGAGAAGAAGGGCAGGGAAGGGAATGAAGGCGTGGGAGGAGCTGGTACGGGGTGAAAACGCAGGGGAGGGGAGAGAGAGGGACTAG

Protein sequence

MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRRAGKGMKAWEELVRGENAGEGRERD*
Homology
[Close]
BLAST of Csa2G128620.1 vs. TrEMBL
Match: A0A0A0LL36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G128620 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60
          MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR
Sbjct: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60

Query: 61 AGKGMKAWEELVRGENAGEGRERD 85
          AGKGMKAWEELVRGENAGEGRERD
Sbjct: 61 AGKGMKAWEELVRGENAGEGRERD 84

[Close]
BLAST of Csa2G128620.1 vs. NCBI nr
Match: gi|700206333|gb|KGN61452.1| (hypothetical protein Csa_2G128620 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60
          MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR
Sbjct: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60

Query: 61 AGKGMKAWEELVRGENAGEGRERD 85
          AGKGMKAWEELVRGENAGEGRERD
Sbjct: 61 AGKGMKAWEELVRGENAGEGRERD 84

The following BLAST results are available for this feature:
BLAST of Csa2G128620.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LL36_CUCSA1.8e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G128620 PE=4 SV=1[more]
BLAST of Csa2G128620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206333|gb|KGN61452.1|2.6e-39100.00hypothetical protein Csa_2G128620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G128620Csa2G128620gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G128620.1Csa2G128620.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G128620.1.utr3p1Csa2G128620.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G128620.1.cds2Csa2G128620.1.cds2CDS
Csa2G128620.1.cds1Csa2G128620.1.cds1CDS