Csa2G021720.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGGATGCTTTAACTACTGCTGCCAACTTAGCTGGTTGGGATCTCGGAACCATAAGGTACATGTTTTTTACTGTTATTAAATGATTTTTTTTAAAAAAAACAAAATAGTATTCTTTCAATAATTAATGACAAAAATAGTGTGGGAGCAAAAATATGAGAAAAATAGGTAGTGAAATAAATGGTAGATGTGGTTTACAACCTTATGAATGAAATCATCGTGAAAGGAACTTCACTCTTTTTGTTTCAACCTCTCAACTGCCCCAGGGTGCAGGAACTGGTTTTTGTATCTCTTTTTGCTTTGTCTTTTGGTTTTACTTTATACTTTTTGTATGCACTATTTGTGTTTATACTTTCCTTTGTATATATATGTGGAGGGGCGTTGGATTGGGGATTCTACTTTTTTTTCCATCATTTTCTACAAATGTAAACAAGTTGATTAAATATGTGGTCTATGCATTTCGAAGATTTAGTGATCATTTTTTTTAATAAGGGAATGGTGGGGATCGTGATATTGAGGTTTGCAAGACTTTTTTAGCTTTATTTTAAAAATATGTAGTTGATTAATAATTCTCTCTCTTTGTTGTACGTGTGTTCTTCTTAGTGTTTTATTAAATCTAAATAATTTTTTTAAAAGAGTGAGAACTCGTGCAAAGGTGTATGAGTTAGATAAAAGTCATGAATTAGGTCCATGAGTTGGGTTGTTTTTGGTGAAGATATCGATGTAGACATGAAAAAGAGATTTGAATTATTATTTGTTTTCTTATATTTTTATCATTTTTTTATATTTTCACTTTATTTAAGGACCCTATTGTTTGTCATTTATTTGGCCAAGTGCATTATTTAATTTGTGGAATTAACACTGTTTTTTCATATTCATTAGAAATTCTCACAATGTATAATTTAATCTCAGAAGATTTCTCTCATCATCTATTAATTTTGCAATGATTGTGTACTAATTAACAACAGAAAGGAGGCTGATCTTATTCAAGTTATTGTTGAACGAGTGTTGTCTATATTAAATCAAACCCACACGCCCTTAAAGGTAGCTGAGTATCCAGTTGGAATTGATTACAAAATAGAATCCCTTTACTGGACACAAGAAATGTACAAGTCTGAATGTGTTGACATGGTGGGGATATATGGCATTCGAGGCATTGGTAAAACAACTTTGGCTAAAGCTTTATACAACAAAATTGCTAGCCAATTTGAAGGCTGCTGCTTTCTATCAAATGTTAGGGAAGCTTCAAAGCAATTCAATGGCCTTGCTCAATTACAGAAAAAGCTCCTTTTTCAAATCTTAAAGTATGATTTGGAGGTTGTCGATCTTGACAGGGGACATAATATCAAGCAAGCAGGTTCATCTCTTACCAATTCATTTTTTTTTCATATCAAGTTCTTGTCTTTTATACTAACATTATTCCTTGCATAATAATTCTTATGCCATAGGACAATAATTCTAGTGCCTTTAGGGAGTTCGTTCTAATGAATAGTGGGATTCCAGAATGGTTGAGCTATCAGACTACATCAGATTCAATAAGGGTTAGTTTTCAACACAATCGCAATACAGAAAGAACTTTGGCTACATCTGTTACTTTTCGAGTGGATGGGGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACATATTCATCGGCTGTAGACTCAAAAGTTGTTATATGAGAAAATTTCCAACATCAACATCAGAATATACATGGTTAGTAGAAACTTTTTCTGCAACATCTAGTAGCTCCTTGGAAATGAATGATTGGAATGATGTTGTAATCTGTTTTGAGGCTGTGAACTGTCCTGCGGTCGTAACAAGCCTTGATTAGTTGTCCTGTTCAAGAAAGTTTTGAAACACCATTATTTCGTCTATTTGAAGATATGATTCATCTAAGCATGCATGTTTATATCTAAAATCATTCTCAATACTACATCCATAACTGTTTCATTGAAAAATTTAAGGTTCTTATCTTACCCTTAAACCATTCAAATAGAGCATTTGTTCATTTTCAAATTTAATTCCTGTTATTTGATTTGGCTTTGTTGTTCTTATTTGTGTGTTAAGTTTTGTTGCCATTGTTTGTGATATGATGTCAATGAAGGTACAAGAATTTGGTCAAATCCTTTGCTCAAGAAGTCTCTGCCAAATCAGATTGCAAATATGGTCTGTTGCTTGTAGACAATTTTTTAATTGCGACTAATTCCAAAATGCAAGCATACGATCATGTACATGACGATATTCGTTTTACACCAAAACGTGGCATGGAAGGCCTGACAGAGATAACACTCTCCAAATCTATATGGGACAAATTTGTAAAAGATCATAATATTACCTCTGAAATACTAGCTTCAAATGATTCTAATGCATTGGTTCGTGGATACATAGATGGAGATAAACTCTATCTGGTCACACACGATAGACAACACTTCCAAGAATATTTGGGATAGGTGGG ATGGAGGGATGCTTTAACTACTGCTGCCAACTTAGCTGGTTGGGATCTCGGAACCATAAGGACAATAATTCTAGTGCCTTTAGGGAGTTCGTTCTAATGAATAGTGGGATTCCAGAATGGTTGAGCTATCAGACTACATCAGATTCAATAAGGGTTAGTTTTCAACACAATCGCAATACAGAAAGAACTTTGGCTACATCTGTTACTTTTCGAGTGGATGGGGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACATATTCATCGGCTGTAGACTCAAAAGTTGTTATATGAGAAAATTTCCAACATCAACATCAGAATATACATGGTACAAGAATTTGGTCAAATCCTTTGCTCAAGAAGTCTCTGCCAAATCAGATTGCAAATATGGTCTGTTGCTTGTAGACAATTTTTTAATTGCGACTAATTCCAAAATGCAAGCATACGATCATGTACATGACGATATTCGTTTTACACCAAAACGTGGCATGGAAGGCCTGACAGAGATAACACTCTCCAAATCTATATGGGACAAATTTGTAAAAGATCATAATATTACCTCTGAAATACTAGCTTCAAATGATTCTAATGCATTGGTTCGTGGATACATAGATGGAGATAAACTCTATCTGGTCACACACGATAGACAACACTTCCAAGAATATTTGGGATAG ATGGAGGGATGCTTTAACTACTGCTGCCAACTTAGCTGGTTGGGATCTCGGAACCATAAGGACAATAATTCTAGTGCCTTTAGGGAGTTCGTTCTAATGAATAGTGGGATTCCAGAATGGTTGAGCTATCAGACTACATCAGATTCAATAAGGGTTAGTTTTCAACACAATCGCAATACAGAAAGAACTTTGGCTACATCTGTTACTTTTCGAGTGGATGGGGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACATATTCATCGGCTGTAGACTCAAAAGTTGTTATATGAGAAAATTTCCAACATCAACATCAGAATATACATGGTACAAGAATTTGGTCAAATCCTTTGCTCAAGAAGTCTCTGCCAAATCAGATTGCAAATATGGTCTGTTGCTTGTAGACAATTTTTTAATTGCGACTAATTCCAAAATGCAAGCATACGATCATGTACATGACGATATTCGTTTTACACCAAAACGTGGCATGGAAGGCCTGACAGAGATAACACTCTCCAAATCTATATGGGACAAATTTGTAAAAGATCATAATATTACCTCTGAAATACTAGCTTCAAATGATTCTAATGCATTGGTTCGTGGATACATAGATGGAGATAAACTCTATCTGGTCACACACGATAGACAACACTTCCAAGAATATTTGGGATAG MEGCFNYCCQLSWLGSRNHKDNNSSAFREFVLMNSGIPEWLSYQTTSDSIRVSFQHNRNTERTLATSVTFRVDGDSYQGMALVSCNIFIGCRLKSCYMRKFPTSTSEYTWYKNLVKSFAQEVSAKSDCKYGLLLVDNFLIATNSKMQAYDHVHDDIRFTPKRGMEGLTEITLSKSIWDKFVKDHNITSEILASNDSNALVRGYIDGDKLYLVTHDRQHFQEYLG*
BLAST of Csa2G021720.1 vs. TrEMBL
Match: A0A0A0LLP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021720 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 1.9e-128 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1
BLAST of Csa2G021720.1 vs. TrEMBL
Match: E7CHD1_CUCSA (Putative TIR-NBS class protein OS=Cucumis sativus PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 2.9e-44 Identity = 96/143 (67.13%), Postives = 106/143 (74.13%), Query Frame = 1
BLAST of Csa2G021720.1 vs. TrEMBL
Match: A0A0A0LGA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020860 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 3.6e-31 Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1
BLAST of Csa2G021720.1 vs. TrEMBL
Match: A0A0A0LLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 3.8e-28 Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 1
BLAST of Csa2G021720.1 vs. TrEMBL
Match: A0A0A0LLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07 Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 1
HSP 2 Score: 85.5 bits (210), Expect = 9.0e-14 Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
BLAST of Csa2G021720.1 vs. NCBI nr
Match: gi|700205782|gb|KGN60901.1| (hypothetical protein Csa_2G021720 [Cucumis sativus]) HSP 1 Score: 466.5 bits (1199), Expect = 2.7e-128 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1
BLAST of Csa2G021720.1 vs. NCBI nr
Match: gi|315507081|gb|ADU33176.1| (putative TIR-NBS class protein [Cucumis sativus]) HSP 1 Score: 186.8 bits (473), Expect = 4.1e-44 Identity = 96/143 (67.13%), Postives = 106/143 (74.13%), Query Frame = 1
BLAST of Csa2G021720.1 vs. NCBI nr
Match: gi|700205744|gb|KGN60863.1| (hypothetical protein Csa_2G020860 [Cucumis sativus]) HSP 1 Score: 143.3 bits (360), Expect = 5.2e-31 Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1
BLAST of Csa2G021720.1 vs. NCBI nr
Match: gi|659071578|ref|XP_008460724.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo]) HSP 1 Score: 137.5 bits (345), Expect = 2.9e-29 Identity = 66/89 (74.16%), Postives = 72/89 (80.90%), Query Frame = 1
BLAST of Csa2G021720.1 vs. NCBI nr
Match: gi|659071578|ref|XP_008460724.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo]) HSP 1 Score: 32.7 bits (73), Expect = 1.0e+03 Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 1
HSP 2 Score: 133.3 bits (334), Expect = 5.4e-28 Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
|