Csa2G021650.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAGCAAATCCAAAGATACCCCAATGGCAGAAGAAACAAAAAAAGAAAAGTCTAAAGAAAGCAAGAACCTCAAATACTAATTATTTCTATTCAACACCTCGCCCATGCAGATTTGATGCCTTCTCCTTGACTCTGCAGCAGCACAATGGCCTTCGCCACCCCCAAACTTGGCCTCTTCCTCTGCAGTCTTGCCCATGGCTTCTTGCTTTTGGCGAGCTTAGTGCACTGTGATGGTTCACTCTCCCTCTTTCTCAATACACACACACACACACACACAAACACAAGAGCTTCGTAGTTCCTAGTTTTTGATGGGTTCTTCTGTGCATTGAGATGGCTCTCTCTGTCTATTTCTCTGCTTCTAAACACTCTTACACACATAGTTCCATAGTTCCATATCTTTGCAGGGTTCTTTTGTAATCTCACAATTATAATTCTCCCTTATCCATAGACGTTATTTCCCTTATTGCTGCCGCACAAAACCTCACACCCAATTATCCATCATTTGCAGTGAATGAAGACACACTTTTCAAAGCCATGAACAAGTACAGAAGTTCCAAAGAACTTACACCCATGCATAGGAACTCAAAAGCAGACTGCCTCGTCAAGCAAATTGCTTGGGACTTAGACGATCAGTCGCCCCTCAGCATCTTCACCAGCGGCTCCCCCATTATTCCAAGCAATTTAACCCAACTCCCCAATCTCCCGGACTACCTAACCAAGTGCAAAATCGAGCTCAACAACACGAGAAAAGGCTTGATTTTGCCCCTTCACATCCCCACGTTGGCGTTGAAACTTGTTCTTCATGGATGTACACATTCCCAGATGGACAATTACTTAAGCAAACCTGAATTCACGTCGATCGGAATTGGGTGTTATGAAGAATGGGCAGTTTTCGCTTTCGCCACCGATTCTCCCACCGGAAGCTTTAATTCTGCCGTGAAATTGTCTAAGTTGGGTCATCAGCATTTCTTCTTGGTGTCGTCCCTGTTGTTTGGGTTGTTTTTTCTTCTCTCCGGCTGAAGGGATATTTTCTATCCGAAACGACATGTCGATATCGTTTGGAAAATTTTAACTTTCAAGGCATGGTGGGACAATATTGCCCTTCGCTTCAATTTGTTAAAGATAAATACATTTTGGTCTCCGTTATTTATTTATTTTTCTTAATT ATGAACAAGTACAGAAGTTCCAAAGAACTTACACCCATGCATAGGAACTCAAAAGCAGACTGCCTCGTCAAGCAAATTGCTTGGGACTTAGACGATCAGTCGCCCCTCAGCATCTTCACCAGCGGCTCCCCCATTATTCCAAGCAATTTAACCCAACTCCCCAATCTCCCGGACTACCTAACCAAGTGCAAAATCGAGCTCAACAACACGAGAAAAGGCTTGATTTTGCCCCTTCACATCCCCACGTTGGCGTTGAAACTTGTTCTTCATGGATGTACACATTCCCAGATGGACAATTACTTAAGCAAACCTGAATTCACGTCGATCGGAATTGGGTGTTATGAAGAATGGGCAGTTTTCGCTTTCGCCACCGATTCTCCCACCGGAAGCTTTAATTCTGCCGTGAAATTGTCTAAGTTGGGTCATCAGCATTTCTTCTTGGTGTCGTCCCTGTTGTTTGGGTTGTTTTTTCTTCTCTCCGGCTGA ATGAACAAGTACAGAAGTTCCAAAGAACTTACACCCATGCATAGGAACTCAAAAGCAGACTGCCTCGTCAAGCAAATTGCTTGGGACTTAGACGATCAGTCGCCCCTCAGCATCTTCACCAGCGGCTCCCCCATTATTCCAAGCAATTTAACCCAACTCCCCAATCTCCCGGACTACCTAACCAAGTGCAAAATCGAGCTCAACAACACGAGAAAAGGCTTGATTTTGCCCCTTCACATCCCCACGTTGGCGTTGAAACTTGTTCTTCATGGATGTACACATTCCCAGATGGACAATTACTTAAGCAAACCTGAATTCACGTCGATCGGAATTGGGTGTTATGAAGAATGGGCAGTTTTCGCTTTCGCCACCGATTCTCCCACCGGAAGCTTTAATTCTGCCGTGAAATTGTCTAAGTTGGGTCATCAGCATTTCTTCTTGGTGTCGTCCCTGTTGTTTGGGTTGTTTTTTCTTCTCTCCGGCTGA MNKYRSSKELTPMHRNSKADCLVKQIAWDLDDQSPLSIFTSGSPIIPSNLTQLPNLPDYLTKCKIELNNTRKGLILPLHIPTLALKLVLHGCTHSQMDNYLSKPEFTSIGIGCYEEWAVFAFATDSPTGSFNSAVKLSKLGHQHFFLVSSLLFGLFFLLSG*
BLAST of Csa2G021650.1 vs. Swiss-Prot
Match: UGPI3_ARATH (Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana GN=At5g19250 PE=1 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 2.5e-19 Identity = 59/157 (37.58%), Postives = 77/157 (49.04%), Query Frame = 1
BLAST of Csa2G021650.1 vs. Swiss-Prot
Match: UGPI4_ARATH (Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana GN=At3g06035 PE=2 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18 Identity = 53/160 (33.12%), Postives = 84/160 (52.50%), Query Frame = 1
BLAST of Csa2G021650.1 vs. Swiss-Prot
Match: UGPI2_ARATH (Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana GN=At5g19240 PE=2 SV=2) HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11 Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 1
BLAST of Csa2G021650.1 vs. TrEMBL
Match: A0A0A0LIM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021650 PE=4 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 5.2e-88 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1
BLAST of Csa2G021650.1 vs. TrEMBL
Match: A6YTC6_CUCME (GPI-anchored protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 282.3 bits (721), Expect = 3.6e-73 Identity = 140/161 (86.96%), Postives = 145/161 (90.06%), Query Frame = 1
BLAST of Csa2G021650.1 vs. TrEMBL
Match: A6YTC6_CUCME (GPI-anchored protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23 Identity = 57/136 (41.91%), Postives = 86/136 (63.24%), Query Frame = 1
HSP 2 Score: 120.9 bits (302), Expect = 1.4e-24 Identity = 63/159 (39.62%), Postives = 97/159 (61.01%), Query Frame = 1
BLAST of Csa2G021650.1 vs. TrEMBL
Match: M5WK00_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011720mg PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 5.5e-21 Identity = 63/162 (38.89%), Postives = 97/162 (59.88%), Query Frame = 1
BLAST of Csa2G021650.1 vs. TrEMBL
Match: A0A0A0LGC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021640 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.1e-20 Identity = 59/157 (37.58%), Postives = 94/157 (59.87%), Query Frame = 1
BLAST of Csa2G021650.1 vs. TAIR10
Match: AT1G54860.1 (AT1G54860.1 Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 97.4 bits (241), Expect = 8.4e-21 Identity = 52/140 (37.14%), Postives = 77/140 (55.00%), Query Frame = 1
BLAST of Csa2G021650.1 vs. TAIR10
Match: AT5G19250.1 (AT5G19250.1 Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 96.7 bits (239), Expect = 1.4e-20 Identity = 59/157 (37.58%), Postives = 77/157 (49.04%), Query Frame = 1
BLAST of Csa2G021650.1 vs. TAIR10
Match: AT3G06035.1 (AT3G06035.1 Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 93.2 bits (230), Expect = 1.6e-19 Identity = 53/160 (33.12%), Postives = 84/160 (52.50%), Query Frame = 1
BLAST of Csa2G021650.1 vs. TAIR10
Match: AT5G19240.1 (AT5G19240.1 Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 70.9 bits (172), Expect = 8.4e-13 Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 1
BLAST of Csa2G021650.1 vs. NCBI nr
Match: gi|700205775|gb|KGN60894.1| (hypothetical protein Csa_2G021650 [Cucumis sativus]) HSP 1 Score: 331.6 bits (849), Expect = 7.5e-88 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1
BLAST of Csa2G021650.1 vs. NCBI nr
Match: gi|150036257|gb|ABR67420.1| (GPI-anchored protein-like protein [Cucumis melo subsp. melo]) HSP 1 Score: 282.3 bits (721), Expect = 5.2e-73 Identity = 140/161 (86.96%), Postives = 145/161 (90.06%), Query Frame = 1
BLAST of Csa2G021650.1 vs. NCBI nr
Match: gi|150036257|gb|ABR67420.1| (GPI-anchored protein-like protein [Cucumis melo subsp. melo]) HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23 Identity = 57/136 (41.91%), Postives = 86/136 (63.24%), Query Frame = 1
HSP 2 Score: 282.3 bits (721), Expect = 5.2e-73 Identity = 140/161 (86.96%), Postives = 145/161 (90.06%), Query Frame = 1
BLAST of Csa2G021650.1 vs. NCBI nr
Match: gi|703135332|ref|XP_010105845.1| (hypothetical protein L484_002452 [Morus notabilis]) HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24 Identity = 63/159 (39.62%), Postives = 97/159 (61.01%), Query Frame = 1
BLAST of Csa2G021650.1 vs. NCBI nr
Match: gi|659070380|ref|XP_008454795.1| (PREDICTED: uncharacterized GPI-anchored protein At5g19250-like [Cucumis melo]) HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23 Identity = 57/136 (41.91%), Postives = 86/136 (63.24%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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