Csa1G616280.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G616280.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 24393283 .. 24397532 (-)
Sequence length432
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAACGTTGGAGCACGCCTTTCTTCAATGACAACCGAAGAGTTAGTGTTTACCTCTCCTTGCCTTTCTTTTTCTTCGTGACTCAGTGTAAACCTCTTCTTTCGTGAATGTCGGTGAGGTAACAGTGAATATCATAGCACACCTTTTGATTGAAGTCCTTTGGTTTGCATTCAGTTTGCCTTTCTTTGCGACCCATTTCTTCTAGTGTTTTCATTGTTCAATTTCCTTGCCAAATCCTGCTAGGTGATCACTCCCCCTCTCTTGTTGTATGCAATTTTTTTTACCATTTTATAGATAAATTTTATATAAATTTGCTTAGCTGTTGTATTCATGATTCTAGGGTGTTTCTTAGCCTGTTTGAAAACGTCCTGTGATTGAGTTGTCTATTGATTTTTTTTCTTTGTTTATTGAAATCAAACATATATTTTTATTTACTGATTTGGATTGAGTAGTGTAGATTACTTCTATTGTTGGCTACTTATTTTTATCTTAGAATATGAAATAGTTGAGTTGTTTTGGTCTAGGTTAATGTGGAATTGTTGTAGGTTAATATGGAATAGTTTAGTTGTTTTTCCTACAACTTTTTCAATTATCTTGTAACATCTCAAAATTTCCAATCTTCAAATTTGGAACACCTAAGCACAACCTTCTATTTTTCCCACCTTAAATCAAAGTGAGCTCATTGTAGGTGTTTTAGGAGGCTTTGAGTATGTTTTAGATAGTTTATTTTTATCTTATTGCATCCATTTATTATTTCCAAAACATCTCTTACACATGTCTCGCAACTATCACTTGTTTTGACCTATTTTTGAGTGCTTTTGCATGTCTTAGAGATTATTTTAGGTTTTTGTCTCACATTTTCCAAAGTGTAAATTTGTAATCTTAAAATCAATTCAGTATCTCTATAAATCCTTTGGAGTGCTCGTAGACATGTTTGGTAGGTCTTTTAACTACTTATGTATCATCTCTAATACATCTCGCACATTTTCAAACTTTCACTGTGCGTTTTGAAATTAAATTTTTGTCTCTCTTAAGTCATTTGGAGTGCTTTTATACATTTTAGGAAGCTTTTAAAGTACTTATGTATCATCTCACATGCATCTCACATATTTCAAATTTTCATTATGCCTTTTAAAATCAAATTTCTACCTCTCTTAAGTCATTTTTGAGTGTTTTTATGCATGTTTAGTAAGCCTTTTAGGTACTCACATGTTTAAGGAATGAAACAATGGACAAATCTCTAAGTTCTTTCAATATATAATTCATGGACTTTGCTGTATTTGTTGTCATCATGTTATAGCGTCTTCCTGGGTGTTGAACATGATGAGATAACCATGCTATTCCAACATTGTTTAAATATTTCCCTGAACCATTAGAAAATGTACTTCTCCACATTTCTAGAACGTTGATTTACGATATGTTCTTGATGCAATATAAAACAAAGTAGCTACCGTGTCATTCTTATACTTATCATTCAATTTTTGAGTTAAATGTTGGATATAAAGGTTGTGGAATGCATAGGGAAAAATTGACAAAATACCCTTAGAGAAACATGTTTTTCGATCTTTCATGAAGTCTAGATTAGACACTTCACTTATTGCACCTTTCAGTTTTTCTAAGAACCATTGTATTGAGGCATTTGTTTCTCTATTAACTACTCTAAAGGCAAGATGATAAATCTGATTATTACCATCTAAGCAAACGAAAACTATCAATTGACCTCGAAATTTATTCTTAAGAAATGTTTCATCCATGTCTATGAACGGTCTAATGCAATTTAAGAATCCTCTAACACATGGACCACAACTATAAAAAGATATTTGAAGAAATGATCATCTTCAAGTTCCATGTGAAATAATATTGTACCAAGATTTGTAAGTTTGGGTGCTTCATTATATCTAAGTAATAGATTATATGACTCTTCAGAAGACCCCCACACTTGTTCATATGCATTTTCTCTAGCATGACATGCTTTTTTATAACTCATATTTATGTCATAGTCTTGCCTCATGCCTTCTGTGATATCACATGGTTTGTATAGGCGACCAACTCCATTGAATTTGGACTTTATTAATTCTCCAACAACCCAAGGCTTTGCTTGCCTATAGTCACAATTCAAAAACTCTAGAGAATACAAATGAATTTTGACATACTTTTTAATCTTGAATATATATGAATTTTTCGATCTCGTCGCTCGCAATCTCCAACCACACTTGTTATTAATGCATCTAACAAATAGAACCTCTTTTGTAGACTTTTTTTTTTTTACCACAAACTAATTTTTTTCAATGCCAAAACACTTAATCTCATTGACAATTCTCTCTTGCAAAAAAATATTTATCCTACATCAACTCCTCACTTGTAGAGCTTTCTTCGGACCAAGCACTTACTTTTTTTTTCTTTAAGCTTTTGGCTAGTGGAGTAGTAGTTTGCGAGATGCAAAAAAAAAAAAAAAAAAAAAGAGTAACTAAAATCTCTCTAAACATGTATAAAAGCACCCTAAATCACATAAGCACAAATATATAATTCATTTGAGACTAAACATTTGAACTTGCTGCGAGATGCTTGCAAGATGAAAAAAATAACAAACAAATTAGTAATAAGTTTGAAACAACTTTAAATCAACTTGGAAAAATTAAAAGTTAGATTAGATTTATACAATTAAGATTTAAATGTTCCACCAAAAGAGGAAATTTGATTAGGAGGAAAATTGACTTTTTGTGAATTTGTTCTAAAACTCTAACCTTTTCAAATCCAATCCTAAATGTGATCAATCCCTCCAAATTTGGCCTATTTTTGGCAATTTTCACTCAAATAGTTAGTGACCGACTAAGTTGAGGTGGAGAATTGTGGCTTGGTAAGAGGTTAAAGGAAAATGAATTTAAAAATTACAAACCTGAGCTCTCCACCTTCGGATCGTAGTTGTCGTAGTGGTGTTGGATCGTGAAAGAGATGCACCCCTGTGAGGCCGAGATAAACACCAAGCAAAGAAGGGAACTTTAGGTCTTTATAGGTGGAGGCAATTTTCACATTTCATCCACTCGTTTAATTTTTTTTTTTGTAAACTAATTTAATTTGAAAGTGAAATAATAAATATGGTAGCCAATAGTAAAAGGATGATAGTGATATAATATGATTTAGTGTGACAAAGAGTTGATTATTATACTATCTTTTTACTCTCCTAAATTTGATTCTATTTTTGACCATTTCCCAACCATTTTTTGTTGTGTGTGTATATTTAAAATCTTGAATTTGAAATCATTCAGTCAGATCAAAATAGCCATCCGAAACCACCTTTTTCACTGTGTCTACCCTTTCGAGACCTCCCTCTTTTTCCTTCTGCTTTGGCCAATGCAGCCTCTCAGGCGAGACTAAACCCCTACTGCAGCCAACGACGACCAAAGAAAGACCCTTACAGCTCCTCTTCCGGTGCGGACCGGCTGTGTCAACCCGATCTGCACTCTTCTTTTGTTTCTTCATCCAGCAACAACATTATACGACGCCTCTTTTGGTGAACAACCGCCACCAGCTTTGTTTTCTTTTATTTCGACCATTTGGGCATGTTCCAGCAAGTGTTCAAGTCCATTTTGGTAAGCTCCATTGGATAAAAACACTCTTTCGAACTAGTTTAAGGTTCTCTATATTTGTCTCTAATGCTAATTCGGATTAATTTTGGAATTATTTGGACATTTAAGCACCCAAGTCCGTTAGGGTGTTGGACCTCTATTTAGACCCTTTTGAATTAACTTAGGGTGCTGTAAGTTAGTTTCAAAGTATTGGAGAGGTTGATGGCCTTGGGAAAAATCAGCTGGGGCCGACAGAGAGGTCGGTGGCCATGAATAAATCAATTAGGGGCGATAGAGACCGTCGGTGATCGTGGATGAAGTCGATGTGGTCGACAGAGCGTTGATGGTTCAATGTCAGCATGAATTTTGGGTTCACTATTTGTTGTTTTAATGGCCTTATTTTTAGGGTTGTGTAATGTAATGACATCCTTTGAATTGTCTTCAGTACTTGTTTTTACTTTAAGTTTCTCAATGTTCTTTAATCGGATCTTAAATCAAGTTTTTAGTATTGTTATAACAAATAGTTGTTCTTCCTACGTTTTCATCTATTTCAAAATGACATTAGCATGCATGTAGTAAAGGTCATAGTTAGTCAAGATTCAAAAAGTTGCGTCAAAACATCTCTCCTTCTCTTTATGATACTCTCTTCATTCTTGTTTGTTAGTTCAGTGGTTATCATAG

mRNA sequence

ATGGTGAACGTTGGAGCACGCCTTTCTTCAATGACAACCGAAGATGTTTTCATTGTTCAATTTCCTTGCCAAATCCTGCTAGGTGATCACTCCCCCTCTCTTGTTCCATCCGAAACCACCTTTTTCACTGTGTCTACCCTTTCGAGACCTCCCTCTTTTTCCTTCTGCTTTGGCCAATGCAGCCTCTCAGGCGAGACTAAACCCCTACTGCAGCCAACGACGACCAAAGAAAGACCCTTACAGCTCCTCTTCCGGTGCGGACCGGCTGTGTCAACCCGATCTGCACTCTTCTTTTGTTTCTTCATCCAGCAACAACATTATACGACGCCTCTTTTGGTGAACAACCGCCACCAGCTTTGTTTTCTTTTATTTCGACCATTTGGGCATGTTCCAGCAAGTGTTCAAGTCCATTTTGTTCAGTGGTTATCATAG

Coding sequence (CDS)

ATGGTGAACGTTGGAGCACGCCTTTCTTCAATGACAACCGAAGATGTTTTCATTGTTCAATTTCCTTGCCAAATCCTGCTAGGTGATCACTCCCCCTCTCTTGTTCCATCCGAAACCACCTTTTTCACTGTGTCTACCCTTTCGAGACCTCCCTCTTTTTCCTTCTGCTTTGGCCAATGCAGCCTCTCAGGCGAGACTAAACCCCTACTGCAGCCAACGACGACCAAAGAAAGACCCTTACAGCTCCTCTTCCGGTGCGGACCGGCTGTGTCAACCCGATCTGCACTCTTCTTTTGTTTCTTCATCCAGCAACAACATTATACGACGCCTCTTTTGGTGAACAACCGCCACCAGCTTTGTTTTCTTTTATTTCGACCATTTGGGCATGTTCCAGCAAGTGTTCAAGTCCATTTTGTTCAGTGGTTATCATAG

Protein sequence

MVNVGARLSSMTTEDVFIVQFPCQILLGDHSPSLVPSETTFFTVSTLSRPPSFSFCFGQCSLSGETKPLLQPTTTKERPLQLLFRCGPAVSTRSALFFCFFIQQQHYTTPLLVNNRHQLCFLLFRPFGHVPASVQVHFVQWLS*
Homology
[Close]
BLAST of Csa1G616280.1 vs. TrEMBL
Match: A0A0A0LXF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G616280 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 7.4e-78
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MVNVGARLSSMTTEDVFIVQFPCQILLGDHSPSLVPSETTFFTVSTLSRPPSFSFCFGQC 60
           MVNVGARLSSMTTEDVFIVQFPCQILLGDHSPSLVPSETTFFTVSTLSRPPSFSFCFGQC
Sbjct: 1   MVNVGARLSSMTTEDVFIVQFPCQILLGDHSPSLVPSETTFFTVSTLSRPPSFSFCFGQC 60

Query: 61  SLSGETKPLLQPTTTKERPLQLLFRCGPAVSTRSALFFCFFIQQQHYTTPLLVNNRHQLC 120
           SLSGETKPLLQPTTTKERPLQLLFRCGPAVSTRSALFFCFFIQQQHYTTPLLVNNRHQLC
Sbjct: 61  SLSGETKPLLQPTTTKERPLQLLFRCGPAVSTRSALFFCFFIQQQHYTTPLLVNNRHQLC 120

Query: 121 FLLFRPFGHVPASVQVHFVQWLS 144
           FLLFRPFGHVPASVQVHFVQWLS
Sbjct: 121 FLLFRPFGHVPASVQVHFVQWLS 143

[Close]
BLAST of Csa1G616280.1 vs. NCBI nr
Match: gi|700211414|gb|KGN66510.1| (hypothetical protein Csa_1G616280 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.1e-77
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MVNVGARLSSMTTEDVFIVQFPCQILLGDHSPSLVPSETTFFTVSTLSRPPSFSFCFGQC 60
           MVNVGARLSSMTTEDVFIVQFPCQILLGDHSPSLVPSETTFFTVSTLSRPPSFSFCFGQC
Sbjct: 1   MVNVGARLSSMTTEDVFIVQFPCQILLGDHSPSLVPSETTFFTVSTLSRPPSFSFCFGQC 60

Query: 61  SLSGETKPLLQPTTTKERPLQLLFRCGPAVSTRSALFFCFFIQQQHYTTPLLVNNRHQLC 120
           SLSGETKPLLQPTTTKERPLQLLFRCGPAVSTRSALFFCFFIQQQHYTTPLLVNNRHQLC
Sbjct: 61  SLSGETKPLLQPTTTKERPLQLLFRCGPAVSTRSALFFCFFIQQQHYTTPLLVNNRHQLC 120

Query: 121 FLLFRPFGHVPASVQVHFVQWLS 144
           FLLFRPFGHVPASVQVHFVQWLS
Sbjct: 121 FLLFRPFGHVPASVQVHFVQWLS 143

The following BLAST results are available for this feature:
BLAST of Csa1G616280.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXF7_CUCSA7.4e-78100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G616280 PE=4 SV=1[more]
BLAST of Csa1G616280.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211414|gb|KGN66510.1|1.1e-77100.00hypothetical protein Csa_1G616280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G616280Csa1G616280gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G616280.1Csa1G616280.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G616280.1.cds4Csa1G616280.1.cds4CDS
Csa1G616280.1.cds3Csa1G616280.1.cds3CDS
Csa1G616280.1.cds2Csa1G616280.1.cds2CDS
Csa1G616280.1.cds1Csa1G616280.1.cds1CDS