Csa1G542420.1 (mRNA) Cucumber (Chinese Long) v2

NameCsa1G542420.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 20058537 .. 20058998 (+)
Sequence length372
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCATGGAGAAGAGAAATGCTTCTGTACAGGAAATACTTCTGCGAAAAAGAAGAAGAAAGGTGTGACAGGAAAACCAGAGAGGTTGATTTGCATAAAGGAAAGGAACCCATTAGACGAAATGGTGAGGAAAATGAAGAGAGTTTTGAAAAGGGGTTATAGAGACGGTGATTGTGATGAAGAAAACGCATTCTGGCTATTGGTAGGGTTAAGGTGATCAGCTGAGTATGGCCACCATTTCAAGTCTACACTACAGAGTTAAAAATAACATAGTAGGTAGGTAGAGACTGAAGAAACCGGCAGGGGCATTGAAATGAATATTGGTAAAGAGAGGAAGGAGTTAGGGGTGTGCGAAGAGTGGGTTTTGGTTGCTGCAAACCACCCCAACTTTCTTCGGCGGCTTGCTTCCGACGACAAAAGAACCCGATCACGGAAGGGGGAGGCTTTCCTGCACAACTAG

mRNA sequence

ATGAACCATGGAGAAGAGAAATGCTTCTGTACAGGAAATACTTCTGCGAAAAAGAAGAAGAAAGGTGTGACAGGAAAACCAGAGAGGTTGATTTGCATAAAGGAAAGGAACCCATTAGACGAAATGGTGAGGAAAATGAAGAGAGTTTTGAAAAGGGGTTATAGAGACGGTGATTGTGATGAAGAAAACGCATTCTGGCTATTGGTAGGGTTAAGGGGCATTGAAATGAATATTGGTAAAGAGAGGAAGGAGTTAGGGGTGTGCGAAGAGTGGGTTTTGGTTGCTGCAAACCACCCCAACTTTCTTCGGCGGCTTGCTTCCGACGACAAAAGAACCCGATCACGGAAGGGGGAGGCTTTCCTGCACAACTAG

Coding sequence (CDS)

ATGAACCATGGAGAAGAGAAATGCTTCTGTACAGGAAATACTTCTGCGAAAAAGAAGAAGAAAGGTGTGACAGGAAAACCAGAGAGGTTGATTTGCATAAAGGAAAGGAACCCATTAGACGAAATGGTGAGGAAAATGAAGAGAGTTTTGAAAAGGGGTTATAGAGACGGTGATTGTGATGAAGAAAACGCATTCTGGCTATTGGTAGGGTTAAGGGGCATTGAAATGAATATTGGTAAAGAGAGGAAGGAGTTAGGGGTGTGCGAAGAGTGGGTTTTGGTTGCTGCAAACCACCCCAACTTTCTTCGGCGGCTTGCTTCCGACGACAAAAGAACCCGATCACGGAAGGGGGAGGCTTTCCTGCACAACTAG

Protein sequence

MNHGEEKCFCTGNTSAKKKKKGVTGKPERLICIKERNPLDEMVRKMKRVLKRGYRDGDCDEENAFWLLVGLRGIEMNIGKERKELGVCEEWVLVAANHPNFLRRLASDDKRTRSRKGEAFLHN*
BLAST of Csa1G542420.1 vs. TrEMBL
Match: A0A0A0M182_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G542420 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.9e-66
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MNHGEEKCFCTGNTSAKKKKKGVTGKPERLICIKERNPLDEMVRKMKRVLKRGYRDGDCD 60
           MNHGEEKCFCTGNTSAKKKKKGVTGKPERLICIKERNPLDEMVRKMKRVLKRGYRDGDCD
Sbjct: 1   MNHGEEKCFCTGNTSAKKKKKGVTGKPERLICIKERNPLDEMVRKMKRVLKRGYRDGDCD 60

Query: 61  EENAFWLLVGLRGIEMNIGKERKELGVCEEWVLVAANHPNFLRRLASDDKRTRSRKGEAF 120
           EENAFWLLVGLRGIEMNIGKERKELGVCEEWVLVAANHPNFLRRLASDDKRTRSRKGEAF
Sbjct: 61  EENAFWLLVGLRGIEMNIGKERKELGVCEEWVLVAANHPNFLRRLASDDKRTRSRKGEAF 120

Query: 121 LHN 124
           LHN
Sbjct: 121 LHN 123

BLAST of Csa1G542420.1 vs. NCBI nr
Match: gi|700210855|gb|KGN65951.1| (hypothetical protein Csa_1G542420 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 2.8e-66
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MNHGEEKCFCTGNTSAKKKKKGVTGKPERLICIKERNPLDEMVRKMKRVLKRGYRDGDCD 60
           MNHGEEKCFCTGNTSAKKKKKGVTGKPERLICIKERNPLDEMVRKMKRVLKRGYRDGDCD
Sbjct: 1   MNHGEEKCFCTGNTSAKKKKKGVTGKPERLICIKERNPLDEMVRKMKRVLKRGYRDGDCD 60

Query: 61  EENAFWLLVGLRGIEMNIGKERKELGVCEEWVLVAANHPNFLRRLASDDKRTRSRKGEAF 120
           EENAFWLLVGLRGIEMNIGKERKELGVCEEWVLVAANHPNFLRRLASDDKRTRSRKGEAF
Sbjct: 61  EENAFWLLVGLRGIEMNIGKERKELGVCEEWVLVAANHPNFLRRLASDDKRTRSRKGEAF 120

Query: 121 LHN 124
           LHN
Sbjct: 121 LHN 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0M182_CUCSA1.9e-66100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G542420 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700210855|gb|KGN65951.1|2.8e-66100.00hypothetical protein Csa_1G542420 [Cucumis sativus][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G542420Csa1G542420gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G542420.1Csa1G542420.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G542420.1.cds1Csa1G542420.1.cds1CDS
Csa1G542420.1.cds2Csa1G542420.1.cds2CDS