Csa1G270420.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G270420.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 13131130 .. 13131635 (-)
Sequence length282
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCTATGAAAACGTAGGCCCTGAATATTTATCAATTTTTTTTTATATATATTTTCTTAAATTTACCTTTATTTTATATTTTATTATTAGGTTCATTAAATAGAAAAGACGAGGGTTCAGTTGAGTGGACTTCTTCACGTGGCGCCAACTGTCTCTCATCTTTGGACTCACTATCTCATCTCACCTTCACGCCCTCGTCGGCTTCACCCTTTACGCCTTCTCATCTCCGATCTTCTCTCCCTCCTAGTCTCCCATCCTCGACTCTTCACTTCGCCCTCACTGTTGCGGTGCAGCCGGCGCGAGCCGCTCGGCTCGGCTCTCCCTCTCAGTCTCTGAAGTCCCAATCTCCCCCTGTCGTTGGGTAAGTTTAAAGCTTAGGTAGTGATTATTTATTTTGATTTCAGGTTTTTTCGTCATCATAAATGTGTACAACTTTAGTTTCGTTGGAGGATGGACTTTGATGTCTTACTTGAGTTTAATTTGGGGGATTTACAGCATCTGA

mRNA sequence

ATGAAATCTATGAAAACAAAAGACGAGGGTTCAGTTGAGTGGACTTCTTCACGTGGCGCCAACTGTCTCTCATCTTTGGACTCACTATCTCATCTCACCTTCACGCCCTCGTCGGCTTCACCCTTTACGCCTTCTCATCTCCGATCTTCTCTCCCTCCTAGTCTCCCATCCTCGACTCTTCACTTCGCCCTCACTGTTGCGGTGCAGCCGGCGCGAGCCGCTCGGCTCGGCTCTCCCTCTCAGTCTCTGAAGTCCCAATCTCCCCCTGTCGTTGGCATCTGA

Coding sequence (CDS)

ATGAAATCTATGAAAACAAAAGACGAGGGTTCAGTTGAGTGGACTTCTTCACGTGGCGCCAACTGTCTCTCATCTTTGGACTCACTATCTCATCTCACCTTCACGCCCTCGTCGGCTTCACCCTTTACGCCTTCTCATCTCCGATCTTCTCTCCCTCCTAGTCTCCCATCCTCGACTCTTCACTTCGCCCTCACTGTTGCGGTGCAGCCGGCGCGAGCCGCTCGGCTCGGCTCTCCCTCTCAGTCTCTGAAGTCCCAATCTCCCCCTGTCGTTGGCATCTGA

Protein sequence

MKSMKTKDEGSVEWTSSRGANCLSSLDSLSHLTFTPSSASPFTPSHLRSSLPPSLPSSTLHFALTVAVQPARAARLGSPSQSLKSQSPPVVGI*
Homology
[Close]
BLAST of Csa1G270420.1 vs. TrEMBL
Match: A0A0A0LZ39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G270420 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.6e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MKSMKTKDEGSVEWTSSRGANCLSSLDSLSHLTFTPSSASPFTPSHLRSSLPPSLPSSTL 60
          MKSMKTKDEGSVEWTSSRGANCLSSLDSLSHLTFTPSSASPFTPSHLRSSLPPSLPSSTL
Sbjct: 1  MKSMKTKDEGSVEWTSSRGANCLSSLDSLSHLTFTPSSASPFTPSHLRSSLPPSLPSSTL 60

Query: 61 HFALTVAVQPARAARLGSPSQSLKSQSPPVVGI 94
          HFALTVAVQPARAARLGSPSQSLKSQSPPVVGI
Sbjct: 61 HFALTVAVQPARAARLGSPSQSLKSQSPPVVGI 93

[Close]
BLAST of Csa1G270420.1 vs. NCBI nr
Match: gi|700210155|gb|KGN65251.1| (hypothetical protein Csa_1G270420 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 6.6e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MKSMKTKDEGSVEWTSSRGANCLSSLDSLSHLTFTPSSASPFTPSHLRSSLPPSLPSSTL 60
          MKSMKTKDEGSVEWTSSRGANCLSSLDSLSHLTFTPSSASPFTPSHLRSSLPPSLPSSTL
Sbjct: 1  MKSMKTKDEGSVEWTSSRGANCLSSLDSLSHLTFTPSSASPFTPSHLRSSLPPSLPSSTL 60

Query: 61 HFALTVAVQPARAARLGSPSQSLKSQSPPVVGI 94
          HFALTVAVQPARAARLGSPSQSLKSQSPPVVGI
Sbjct: 61 HFALTVAVQPARAARLGSPSQSLKSQSPPVVGI 93

The following BLAST results are available for this feature:
BLAST of Csa1G270420.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZ39_CUCSA4.6e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G270420 PE=4 SV=1[more]
BLAST of Csa1G270420.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210155|gb|KGN65251.1|6.6e-44100.00hypothetical protein Csa_1G270420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G270420Csa1G270420gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G270420.1Csa1G270420.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G270420.1.cds3Csa1G270420.1.cds3CDS
Csa1G270420.1.cds2Csa1G270420.1.cds2CDS
Csa1G270420.1.cds1Csa1G270420.1.cds1CDS