Csa1G166790.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G166790.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10382031 .. 10382351 (-)
Sequence length321
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCACCGTCTCCAGTAATGATTGAAACTGTGGTGGGTCAGACTCTCTTGGCTTCTTCTTCTAATACCAAGTTAACCACCACCTTTCAGACCTCAAACATGGAAGACGACCGCTTGGATCTCAATCAATGCCTACCTATTGTCCTCCCTTGGCCTTTCAAGAATAAACTCTGTGTTATGTCTATGCCTACTGCGAAGAAAAACCAATTGGCCAGAAACCAAAAACTTCTCCTTCGTGAATTGGAACTTCACTCCTCTATCAATCACAACAGACCTTCTTCCTCATCCATCCCCAGCAGGATCATTGATTTATCATGA

mRNA sequence

ATGTCACCACCGTCTCCAGTAATGATTGAAACTGTGGTGGGTCAGACTCTCTTGGCTTCTTCTTCTAATACCAAGTTAACCACCACCTTTCAGACCTCAAACATGGAAGACGACCGCTTGGATCTCAATCAATGCCTACCTATTGTCCTCCCTTGGCCTTTCAAGAATAAACTCTGTGTTATGTCTATGCCTACTGCGAAGAAAAACCAATTGGCCAGAAACCAAAAACTTCTCCTTCGTGAATTGGAACTTCACTCCTCTATCAATCACAACAGACCTTCTTCCTCATCCATCCCCAGCAGGATCATTGATTTATCATGA

Coding sequence (CDS)

ATGTCACCACCGTCTCCAGTAATGATTGAAACTGTGGTGGGTCAGACTCTCTTGGCTTCTTCTTCTAATACCAAGTTAACCACCACCTTTCAGACCTCAAACATGGAAGACGACCGCTTGGATCTCAATCAATGCCTACCTATTGTCCTCCCTTGGCCTTTCAAGAATAAACTCTGTGTTATGTCTATGCCTACTGCGAAGAAAAACCAATTGGCCAGAAACCAAAAACTTCTCCTTCGTGAATTGGAACTTCACTCCTCTATCAATCACAACAGACCTTCTTCCTCATCCATCCCCAGCAGGATCATTGATTTATCATGA

Protein sequence

MSPPSPVMIETVVGQTLLASSSNTKLTTTFQTSNMEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPSSSSIPSRIIDLS*
Homology
[Close]
BLAST of Csa1G166790.1 vs. TrEMBL
Match: A0A0A0LSQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166790 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MSPPSPVMIETVVGQTLLASSSNTKLTTTFQTSNMEDDRLDLNQCLPIVLPWPFKNKLCV 60
           MSPPSPVMIETVVGQTLLASSSNTKLTTTFQTSNMEDDRLDLNQCLPIVLPWPFKNKLCV
Sbjct: 1   MSPPSPVMIETVVGQTLLASSSNTKLTTTFQTSNMEDDRLDLNQCLPIVLPWPFKNKLCV 60

Query: 61  MSMPTAKKNQLARNQKLLLRELELHSSINHNRPSSSSIPSRIIDLS 107
           MSMPTAKKNQLARNQKLLLRELELHSSINHNRPSSSSIPSRIIDLS
Sbjct: 61  MSMPTAKKNQLARNQKLLLRELELHSSINHNRPSSSSIPSRIIDLS 106

[Close]
BLAST of Csa1G166790.1 vs. NCBI nr
Match: gi|700209854|gb|KGN64950.1| (hypothetical protein Csa_1G166790 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MSPPSPVMIETVVGQTLLASSSNTKLTTTFQTSNMEDDRLDLNQCLPIVLPWPFKNKLCV 60
           MSPPSPVMIETVVGQTLLASSSNTKLTTTFQTSNMEDDRLDLNQCLPIVLPWPFKNKLCV
Sbjct: 1   MSPPSPVMIETVVGQTLLASSSNTKLTTTFQTSNMEDDRLDLNQCLPIVLPWPFKNKLCV 60

Query: 61  MSMPTAKKNQLARNQKLLLRELELHSSINHNRPSSSSIPSRIIDLS 107
           MSMPTAKKNQLARNQKLLLRELELHSSINHNRPSSSSIPSRIIDLS
Sbjct: 61  MSMPTAKKNQLARNQKLLLRELELHSSINHNRPSSSSIPSRIIDLS 106

The following BLAST results are available for this feature:
BLAST of Csa1G166790.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSQ9_CUCSA3.0e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166790 PE=4 SV=1[more]
BLAST of Csa1G166790.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209854|gb|KGN64950.1|4.4e-52100.00hypothetical protein Csa_1G166790 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G166790Csa1G166790gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G166790.1Csa1G166790.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G166790.1.cds1Csa1G166790.1.cds1CDS