Csa1G144340.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G144340.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 9661025 .. 9661293 (+)
Sequence length150
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAATTTTATGAGAGACGCTGGTGAAAGCGAATCCCAGGTCCATAGCGTGATGTTGGTGAATGTGAATCTCAGGTCTACATGATGGTGAAAGTGAATCCAGGTATGAGAAAGAATGAGTATTACAACGCTCTATTGGAAATCACAGAAAAATTGTGTGATGCTCGTGAAAGTGAATCCTAGATCCATCAGTGACTCTGGTGAAGTGAATTCCAAGTCTAGGCGATGAGACGTTGGTGAAAGCGAATCCTAGGTGTAGGTAATGGG

mRNA sequence

ATGAGGAATTTTATGAGAGACGCTGGTGAAAGCGAATCCCAGGTCTACATGATGGTGAAAGTGAATCCAGGTATGAGAAAGAATGAGTATTACAACGCTCTATTGGAAATCACAGAAAAATTGTGTGATGCTCGTGAAAGTGAATCCTAG

Coding sequence (CDS)

ATGAGGAATTTTATGAGAGACGCTGGTGAAAGCGAATCCCAGGTCTACATGATGGTGAAAGTGAATCCAGGTATGAGAAAGAATGAGTATTACAACGCTCTATTGGAAATCACAGAAAAATTGTGTGATGCTCGTGAAAGTGAATCCTAG

Protein sequence

MRNFMRDAGESESQVYMMVKVNPGMRKNEYYNALLEITEKLCDARESES*
Homology
[Close]
BLAST of Csa1G144340.1 vs. TrEMBL
Match: A0A0A0LY29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144340 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MRNFMRDAGESESQVYMMVKVNPGMRKNEYYNALLEITEKLCDARESES 50
          MRNFMRDAGESESQVYMMVKVNPGMRKNEYYNALLEITEKLCDARESES
Sbjct: 1  MRNFMRDAGESESQVYMMVKVNPGMRKNEYYNALLEITEKLCDARESES 49

[Close]
BLAST of Csa1G144340.1 vs. NCBI nr
Match: gi|700209785|gb|KGN64881.1| (hypothetical protein Csa_1G144340 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MRNFMRDAGESESQVYMMVKVNPGMRKNEYYNALLEITEKLCDARESES 50
          MRNFMRDAGESESQVYMMVKVNPGMRKNEYYNALLEITEKLCDARESES
Sbjct: 1  MRNFMRDAGESESQVYMMVKVNPGMRKNEYYNALLEITEKLCDARESES 49

The following BLAST results are available for this feature:
BLAST of Csa1G144340.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY29_CUCSA2.7e-19100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144340 PE=4 SV=1[more]
BLAST of Csa1G144340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209785|gb|KGN64881.1|3.9e-19100.00hypothetical protein Csa_1G144340 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G144340Csa1G144340gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G144340.1Csa1G144340.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G144340.1.cds1Csa1G144340.1.cds1CDS
Csa1G144340.1.cds2Csa1G144340.1.cds2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G144340.1.utr3p1Csa1G144340.1.utr3p1three_prime_UTR