Csa1G070070.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G070070.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Linalool synthase; contains IPR008949 (Terpenoid synthase)
Location	Chr1 : 7039450 .. 7039710 (-)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCGCGACGGATCCTATGCAGAATACTACATGAAGGAGCATCCAGGCATTTCCTATGAAGCAACACAGCAACATATTCAGAAGAAGATTTCTGAAGCATGGAAGACTCTGAATACAGAACATCTCTTTTCTAATATCTTCCCCACCAGTTTCACTCAGGCTTCTCTCAATATTGCTAGAGCTGTTCCTTTGGCGTATAACTATGGTAGAAACCAATCTATCATGACAGTCGAGAAGCTTATGGAACAATATTGCTAA

mRNA sequence

ATGGGGCGCGACGGATCCTATGCAGAATACTACATGAAGGAGCATCCAGGCATTTCCTATGAAGCAACACAGCAACATATTCAGAAGAAGATTTCTGAAGCATGGAAGACTCTGAATACAGAACATCTCTTTTCTAATATCTTCCCCACCAGTTTCACTCAGGCTTCTCTCAATATTGCTAGAGCTGTTCCTTTGGCGTATAACTATGGTAGAAACCAATCTATCATGACAGTCGAGAAGCTTATGGAACAATATTGCTAA

Coding sequence (CDS)

ATGGGGCGCGACGGATCCTATGCAGAATACTACATGAAGGAGCATCCAGGCATTTCCTATGAAGCAACACAGCAACATATTCAGAAGAAGATTTCTGAAGCATGGAAGACTCTGAATACAGAACATCTCTTTTCTAATATCTTCCCCACCAGTTTCACTCAGGCTTCTCTCAATATTGCTAGAGCTGTTCCTTTGGCGTATAACTATGGTAGAAACCAATCTATCATGACAGTCGAGAAGCTTATGGAACAATATTGCTAA

Protein sequence

MGRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIARAVPLAYNYGRNQSIMTVEKLMEQYC*

Homology

[Close]

BLAST of Csa1G070070.1 vs. Swiss-Prot
Match: NES1_FRAVE ((3S,6E)-nerolidol synthase 1, chloroplastic OS=Fragaria vesca PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.9e-15
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           G DGSY   Y++EH G S E  ++     IS+ WK LN E L  N FP +FT ASLN+AR
Sbjct: 490 GNDGSYVRCYLEEHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPATFTSASLNLAR 549

Query: 62  AVPLAYNYGRNQSIMTVEKLME 84
            +PL Y+Y  NQS+ ++++ M+
Sbjct: 550 MIPLMYSYDGNQSLPSLKEYMK 571

[Close]

BLAST of Csa1G070070.1 vs. Swiss-Prot
Match: NES1_FRAAN ((3S,6E)-nerolidol synthase 1 OS=Fragaria ananassa PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-14
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           G DGSY   Y++EH G S E  ++     IS+ WK LN E L  N FP SFT ASLN+AR
Sbjct: 429 GNDGSYVRCYLEEHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPASFTLASLNLAR 488

Query: 62  AVPLAYNYGRNQSIMTVEKLME 84
            +PL Y+Y  NQ + ++++ M+
Sbjct: 489 MIPLMYSYDGNQCLPSLKEYMK 510

[Close]

BLAST of Csa1G070070.1 vs. Swiss-Prot
Match: NES2_FRAAN ((3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial OS=Fragaria ananassa PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-13
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           G DGSY   Y++EH G S E  ++     IS+ WK LN E L  N FP + T ASLN+AR
Sbjct: 488 GNDGSYVRCYLEEHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPATITLASLNLAR 547

Query: 62  AVPLAYNYGRNQSIMTVEKLME 84
            +PL Y+Y  NQ + ++++ M+
Sbjct: 548 MIPLMYSYDGNQCLPSLKEYMK 569

[Close]

BLAST of Csa1G070070.1 vs. Swiss-Prot
Match: TPS13_RICCO (Probable terpene synthase 13 OS=Ricinus communis GN=TPS13 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-12
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           G DGSY E Y+KEH G   E   + +   IS+AWK LN E L  N F  +FT++ LN+AR
Sbjct: 482 GHDGSYVECYVKEHKGSLVEIATKKVTVMISDAWKQLNQECLHPNPFSPNFTKSCLNLAR 541

Query: 62  AVPLAYNYGRNQSIMTVE 80
            VPL Y+Y  N  +  +E
Sbjct: 542 MVPLMYSYDDNHRLPVLE 559

[Close]

BLAST of Csa1G070070.1 vs. Swiss-Prot
Match: LINS_ARATH (S-(+)-linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-12
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           G DGSY E Y+ E+ G + +  + H+ +KIS AWK LN E L    F  SF++A LNIAR
Sbjct: 487 GTDGSYVECYLNEYKGSTVDEARTHVAQKISRAWKRLNRECLNPCPFSRSFSKACLNIAR 546

Query: 62  AVPLAYNYGRNQSI 76
            VPL Y+Y  +Q +
Sbjct: 547 TVPLMYSYDDDQRL 560

[Close]

BLAST of Csa1G070070.1 vs. TrEMBL
Match: A0A0A0LRQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G070070 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MGRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIA 60
          MGRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIA
Sbjct: 1  MGRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIA 60

Query: 61 RAVPLAYNYGRNQSIMTVEKLMEQYC 87
          RAVPLAYNYGRNQSIMTVEKLMEQYC
Sbjct: 61 RAVPLAYNYGRNQSIMTVEKLMEQYC 86

[Close]

BLAST of Csa1G070070.1 vs. TrEMBL
Match: A0A0A0LUC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G068570 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.4e-25
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           GRDGSY EYYMKE+P ISYE TQQH  K+IS AWKTLN E L SN FP+ F QA LN+AR
Sbjct: 484 GRDGSYLEYYMKENPSISYEETQQHTMKRISNAWKTLNRESLLSNQFPSKFNQACLNVAR 543

Query: 62  AVPLAYNYGRNQSIMTVEKLME 84
           AVPLAYNY RN+SI++++ L++
Sbjct: 544 AVPLAYNYDRNKSILSMDNLLK 565

[Close]

BLAST of Csa1G070070.1 vs. TrEMBL
Match: A0A0A0LX78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066550 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-16
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLF-SNIFPTSFTQASLNIA 61
           G DGSY +YYMKE+P IS ++ QQ +   IS+AWK LN E L  +N FP +F QAS N+A
Sbjct: 507 GYDGSYIDYYMKENPEISVDSAQQRVNHMISDAWKRLNQESLSPNNPFPETFIQASQNMA 566

Query: 62  RAVPLAYNYGRNQSIMTVEKLME 84
           R VP+ Y Y  NQ++ T+EKLM+
Sbjct: 567 RFVPVLYGYDENQNLPTLEKLMK 589

[Close]

BLAST of Csa1G070070.1 vs. TrEMBL
Match: A0A061GGG2_THECC (3S-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase, putative OS=Theobroma cacao GN=TCM_030061 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           G DGSY E YM+EH G+ YE+ ++H+   IS AWK LN E L  N F   F +ASLNIAR
Sbjct: 489 GNDGSYVECYMEEHQGVEYESARKHVTNMISNAWKRLNHECLSENPFSLPFARASLNIAR 548

Query: 62  AVPLAYNYGRNQSIMTVEKLME 84
            VPL Y+Y  NQ + ++E+ M+
Sbjct: 549 MVPLMYSYDENQCLPSLEEYMK 570

[Close]

BLAST of Csa1G070070.1 vs. TrEMBL
Match: A0A068TTV0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029361001 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-15
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           G DGSY +YYMKEH G++ +  ++H+ K+ISE WK LN E L  N F +SF +ASLN+AR
Sbjct: 486 GHDGSYIDYYMKEHQGVTLDIAREHVFKQISEEWKRLNKECLRLNRFSSSFQRASLNLAR 545

Query: 62  AVPLAYNYGRNQSIMTVEK 81
            VPL Y+Y  NQ ++ +++
Sbjct: 546 MVPLMYSYDDNQRLLDLDE 564

[Close]

BLAST of Csa1G070070.1 vs. TAIR10
Match: AT1G61680.1 (AT1G61680.1 terpene synthase 14)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-13
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           G DGSY E Y+ E+ G + +  + H+ +KIS AWK LN E L    F  SF++A LNIAR
Sbjct: 487 GTDGSYVECYLNEYKGSTVDEARTHVAQKISRAWKRLNRECLNPCPFSRSFSKACLNIAR 546

Query: 62  AVPLAYNYGRNQSI 76
            VPL Y+Y  +Q +
Sbjct: 547 TVPLMYSYDDDQRL 560

[Close]

BLAST of Csa1G070070.1 vs. NCBI nr
Match: gi|700209494|gb|KGN64590.1| (hypothetical protein Csa_1G070070 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MGRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIA 60
          MGRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIA
Sbjct: 1  MGRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIA 60

Query: 61 RAVPLAYNYGRNQSIMTVEKLMEQYC 87
          RAVPLAYNYGRNQSIMTVEKLMEQYC
Sbjct: 61 RAVPLAYNYGRNQSIMTVEKLMEQYC 86

[Close]

BLAST of Csa1G070070.1 vs. NCBI nr
Match: gi|659068831|ref|XP_008446523.1| (PREDICTED: (3S,6E)-nerolidol synthase 1-like [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 3.1e-40
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1   MGRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIA 60
           MGRDGSYAEYYMKEHP IS EATQQHI+KKISEAWKTLNTEHLFSNIFPTSFTQASLNIA
Sbjct: 503 MGRDGSYAEYYMKEHPNISSEATQQHIKKKISEAWKTLNTEHLFSNIFPTSFTQASLNIA 562

Query: 61  RAVPLAYNYGRNQSIMTVEKLMEQYC 87
           RAVPLAYNYGRNQSIMTVEKLMEQYC
Sbjct: 563 RAVPLAYNYGRNQSIMTVEKLMEQYC 588

[Close]

BLAST of Csa1G070070.1 vs. NCBI nr
Match: gi|659067871|ref|XP_008441685.1| (PREDICTED: (3S,6E)-nerolidol synthase 1-like [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-25
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           GRDGSY EYYMKE+P ISYE TQQH  KKIS AWKTLN E L SN FP+ F QA LN+AR
Sbjct: 488 GRDGSYLEYYMKENPSISYEETQQHTMKKISNAWKTLNRESLLSNQFPSKFNQACLNVAR 547

Query: 62  AVPLAYNYGRNQSIMTVEKLMEQ 85
           AVPLAYNY RN+SI+++E L+++
Sbjct: 548 AVPLAYNYDRNKSIVSMENLVKK 570

[Close]

BLAST of Csa1G070070.1 vs. NCBI nr
Match: gi|778664893|ref|XP_011648432.1| (PREDICTED: (3S,6E)-nerolidol synthase 1-like [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 4.8e-25
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           GRDGSY EYYMKE+P ISYE TQQH  K+IS AWKTLN E L SN FP+ F QA LN+AR
Sbjct: 472 GRDGSYLEYYMKENPSISYEETQQHTMKRISNAWKTLNRESLLSNQFPSKFNQACLNVAR 531

Query: 62  AVPLAYNYGRNQSIMTVEKLME 84
           AVPLAYNY RN+SI++++ L++
Sbjct: 532 AVPLAYNYDRNKSILSMDNLLK 553

[Close]

BLAST of Csa1G070070.1 vs. NCBI nr
Match: gi|700209493|gb|KGN64589.1| (hypothetical protein Csa_1G068570 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 4.8e-25
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 2   GRDGSYAEYYMKEHPGISYEATQQHIQKKISEAWKTLNTEHLFSNIFPTSFTQASLNIAR 61
           GRDGSY EYYMKE+P ISYE TQQH  K+IS AWKTLN E L SN FP+ F QA LN+AR
Sbjct: 484 GRDGSYLEYYMKENPSISYEETQQHTMKRISNAWKTLNRESLLSNQFPSKFNQACLNVAR 543

Query: 62  AVPLAYNYGRNQSIMTVEKLME 84
           AVPLAYNY RN+SI++++ L++
Sbjct: 544 AVPLAYNYDRNKSILSMDNLLK 565

The following BLAST results are available for this feature:

BLAST of Csa1G070070.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NES1_FRAVE	5.9e-15	46.34	(3S,6E)-nerolidol synthase 1, chloroplastic OS=Fragaria vesca PE=1 SV=1	[more]
NES1_FRAAN	1.7e-14	46.34	(3S,6E)-nerolidol synthase 1 OS=Fragaria ananassa PE=1 SV=1	[more]
NES2_FRAAN	1.9e-13	43.90	(3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial OS=Fragaria ananassa P...	[more]
TPS13_RICCO	1.2e-12	46.15	Probable terpene synthase 13 OS=Ricinus communis GN=TPS13 PE=3 SV=1	[more]
LINS_ARATH	4.7e-12	47.30	S-(+)-linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=...	[more]

BLAST of Csa1G070070.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRQ7_CUCSA	1.4e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G070070 PE=4 SV=1	[more]
A0A0A0LUC8_CUCSA	3.4e-25	68.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G068570 PE=3 SV=1	[more]
A0A0A0LX78_CUCSA	6.4e-16	54.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066550 PE=3 SV=1	[more]
A0A061GGG2_THECC	1.1e-15	51.22	3S-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase, putative OS=Theobrom...	[more]
A0A068TTV0_COFCA	2.4e-15	50.63	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029361001 PE=3 SV=1	[more]

BLAST of Csa1G070070.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61680.1	2.6e-13	47.30	terpene synthase 14	[more]

BLAST of Csa1G070070.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209494\|gb\|KGN64590.1\|	2.0e-42	100.00	hypothetical protein Csa_1G070070 [Cucumis sativus]	[more]
gi\|659068831\|ref\|XP_008446523.1\|	3.1e-40	96.51	PREDICTED: (3S,6E)-nerolidol synthase 1-like [Cucumis melo]	[more]
gi\|659067871\|ref\|XP_008441685.1\|	1.3e-25	69.88	PREDICTED: (3S,6E)-nerolidol synthase 1-like [Cucumis melo]	[more]
gi\|778664893\|ref\|XP_011648432.1\|	4.8e-25	68.29	PREDICTED: (3S,6E)-nerolidol synthase 1-like [Cucumis sativus]	[more]
gi\|700209493\|gb\|KGN64589.1\|	4.8e-25	68.29	hypothetical protein Csa_1G068570 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008949	Isoprenoid_synthase_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0010333	terpene synthase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G070070	Csa1G070070	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G070070.1	Csa1G070070.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G070070.1.cds1	Csa1G070070.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008949	Isoprenoid synthase domain	GENE3D	G3DSA:1.10.600.10		coord: 2..76 score: 2.6
IPR008949	Isoprenoid synthase domain	unknown	SSF48576	Terpenoid synthases	coord: 5..75 score: 7.48
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 2..84 score: 4.6
None	No IPR available	PANTHER	PTHR31225:SF0	S-(+)-LINALOOL SYNTHASE, CHLOROPLASTIC	coord: 2..84 score: 4.6