Csa1G050080.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G050080.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5733077 .. 5733485 (+)
Sequence length222
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAATGGAGAGAGTAAAATAGTGGGCAAACCCAAAGACCGATTTTTAGTGAACCGGGATCACCAATCTCCTATTTCTTCCGGTCTCTCTGTCTTTTCCTTCGCCCGTCGGTTCCCGCTCTTCCCAAATTGCAACCATCTCCGTCTCCTTCTCTTTGTCTCTCTCTTTCTTGTTCCACTCCATTTCTGTGCAAGTTCAAAGGTACAATAATTCCCTAATTTTTACTTCTTCTTTCCCGGGATTTTTTTGTTCTATAAATCATTTGCTGATGAATTTTCTGGGGTTTCTTCTCTTTCACTCCATTGTTATCTTTTCACGTTGAATTTTGAGTACACAATTTCGCGGTTCTAAGTGTTCGAAATTTTGCCCAATTTCGTCCTCTTTTTAGGTTCAACAATTGCTTTAA

mRNA sequence

ATGAACAATGGAGAGAGTAAAATAGTGGGCAAACCCAAAGACCGATTTTTAGTGAACCGGGATCACCAATCTCCTATTTCTTCCGGTCTCTCTGTCTTTTCCTTCGCCCGTCGGTTCCCGCTCTTCCCAAATTGCAACCATCTCCGTCTCCTTCTCTTTGTCTCTCTCTTTCTTGTTCCACTCCATTTCTGTGCAAGTTCAAAGGTTCAACAATTGCTTTAA

Coding sequence (CDS)

ATGAACAATGGAGAGAGTAAAATAGTGGGCAAACCCAAAGACCGATTTTTAGTGAACCGGGATCACCAATCTCCTATTTCTTCCGGTCTCTCTGTCTTTTCCTTCGCCCGTCGGTTCCCGCTCTTCCCAAATTGCAACCATCTCCGTCTCCTTCTCTTTGTCTCTCTCTTTCTTGTTCCACTCCATTTCTGTGCAAGTTCAAAGGTTCAACAATTGCTTTAA

Protein sequence

MNNGESKIVGKPKDRFLVNRDHQSPISSGLSVFSFARRFPLFPNCNHLRLLLFVSLFLVPLHFCASSKVQQLL*
Homology
[Close]
BLAST of Csa1G050080.1 vs. TrEMBL
Match: A0A0A0LTQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050080 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.5e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MNNGESKIVGKPKDRFLVNRDHQSPISSGLSVFSFARRFPLFPNCNHLRLLLFVSLFLVP 60
          MNNGESKIVGKPKDRFLVNRDHQSPISSGLSVFSFARRFPLFPNCNHLRLLLFVSLFLVP
Sbjct: 1  MNNGESKIVGKPKDRFLVNRDHQSPISSGLSVFSFARRFPLFPNCNHLRLLLFVSLFLVP 60

Query: 61 LHFCASSKVQQLL 74
          LHFCASSKVQQLL
Sbjct: 61 LHFCASSKVQQLL 73

[Close]
BLAST of Csa1G050080.1 vs. NCBI nr
Match: gi|700209273|gb|KGN64369.1| (hypothetical protein Csa_1G050080 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MNNGESKIVGKPKDRFLVNRDHQSPISSGLSVFSFARRFPLFPNCNHLRLLLFVSLFLVP 60
          MNNGESKIVGKPKDRFLVNRDHQSPISSGLSVFSFARRFPLFPNCNHLRLLLFVSLFLVP
Sbjct: 1  MNNGESKIVGKPKDRFLVNRDHQSPISSGLSVFSFARRFPLFPNCNHLRLLLFVSLFLVP 60

Query: 61 LHFCASSKVQQLL 74
          LHFCASSKVQQLL
Sbjct: 61 LHFCASSKVQQLL 73

The following BLAST results are available for this feature:
BLAST of Csa1G050080.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTQ1_CUCSA7.5e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050080 PE=4 SV=1[more]
BLAST of Csa1G050080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209273|gb|KGN64369.1|1.1e-33100.00hypothetical protein Csa_1G050080 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G050080Csa1G050080gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G050080.1Csa1G050080.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G050080.1.cds1Csa1G050080.1.cds1CDS
Csa1G050080.1.cds2Csa1G050080.1.cds2CDS