Csa1G028060.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G028060.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3101443 .. 3103241 (+)
Sequence length312
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGGGTTTGTTGCTCGTGTTGGCCGGAGGAACAATGGAACGTGACTTGTACATTGTTCCTTTATATTGAAGCCCGATGATTGAGTAATAACCTCTTGTTAAAACTTGGTTTACTATCGAATGACCATAAGTGAATTTTGAAGTGAATGCTATGTTGTAGTTGTGATTCTAGAACTTAAGAGAATGACGAGGCTATGAGATGGTGTTTATGCTCACTCTCTATCAACGTGGCATGCGAATTGCTTACATTAAGCCTTCCAAATATACCACCCTTTTTTTTTCGTGATCGTTGTTGCTTTGTGACGTCTACTTCTCCTTTTCCATTGTTCAATGGAGATTTCATAACCACGATTTAATTGTGAGGGTGAAAATGTAAATTCACATGGTAATAGCTGTCATTGCTTATTTTGAGCATCGATGGAATGTATAGTTTCTGGGATTAGGACTAGGATGGAGATGGGTAAGACGCGATTGCTGTAGGGTTCATTAGTTTACTTCACCATTTGCATCTTTTAAATTAGCATAGCCACGCGAATGTAACCAAAATAGAACGACCAAATAAATGTCTATTCTTGATTTTTTTTTTGGGTTGCGTAATTTAAAGGACGGTATGCCATTTCCTTAACCAAAATAGAGTTATGCGTAAACTGTCACAGCTCCCATTTAATTACACGATTTGTTTAGTTGACTTGAGCCCCACAGGTATATTCCTACGTTTTTATACTTATCTATAAGGTTGAAATGAAACAAAACAAATAAAATAAACACCCATAACCACGATCTATGTTTTATCTTAATTATCTTGGTTCTGATTTGGACTGGTAGCGTGGGATCCTGGTTTCGTGGGATGTAAAGTCAACCAGAAGGGCAATATGGCCATTTGAACTTAATAGGAAGAATGGTTGGAAAAATGGGGAAAAGCAGAGCAGGCACTGTCTGTTGATTGTTCTCAATCAGGCATCCACCATTTCCACTCGGTTTTGTGCCTCTTCAATATCTCCAATAGCAGAATAAACGATACAGCCATTGAATTACAGTAAGTTTGTCCACTCCTGATCTCTCACTTGTTATTTGTATTTCCACTTCACTTCACAACTCTGCTCTAGTGATCCGATTCCCCTTCTACTCCACTAGGGACGGTTGAGATTTGGATTACCTCGAGACTTCTTTGGTATCGGGGTAAATAGAAATGAACTCATTCATTAGGTTAATTTTTGGAGGTAACTTAAATCGTGTTGGGAAAATTAGGATGTAATTGTGTGTATCTATTTATTATCGGTGGGAAAATTATTAGCGTATGATTTTGTATGTGTATTGTATTATTTGTATTAAAGAGGGAGGTAGGGTGGGAGTGTATTAAATTAAAAGCGAACGCGTGGACAACATAGTCTGAACTGGAGGTGTGTTGCGGACAGTTGTTAATTTAATACAACCCCGCGCGCCTACACTTCTTCTAAACGCTAATGAGATTTATTAATTTGAAACCCCTACGTGTTCCGCGCCTCTTTGATCTCTCTTGTCTTTAATAATGAACCATATTTAGTCTTTAATGGGCCTTAAACAAAGCCCAGTTCTGTTCCAATTGTTTGTATTCATCGTTCTACTTGTTCAACCTACTACCGAACTCCAGTTCAGCCATAGCTGATTTGATTTGATTTGAATTTGTTGAGAAAGTAAATTGGGTTTCTGTTTCCCTTTTCTTTGGATCGTATGTATGCTTAACTTTTCATTTTCAGTTTCACGTTGCTGAAGCTGCCGGAGGAATCAGGGACGAGGGAGGCCCTCTCTCTCTCTCTCTGA

mRNA sequence

ATGAGATGGTGTTTATGCTCACTCTCTATCAACGTGGCATGCGAATTGCTTACATTAAGCCTTCCAAATATACCACCCTTTTTTTTTCGTGATCGTTGTTGCTTTGAAGAATGGTTGGAAAAATGGGGAAAAGCAGAGCAGGCACTGTCTGTTGATTGTTCTCAATCAGGCATCCACCATTTCCACTCGGTTTTGTGCCTCTTCAATATCTCCAATAGCAGAATAAACGATACAGCCATTGAATTACATTTCACGTTGCTGAAGCTGCCGGAGGAATCAGGGACGAGGGAGGCCCTCTCTCTCTCTCTCTGA

Coding sequence (CDS)

ATGAGATGGTGTTTATGCTCACTCTCTATCAACGTGGCATGCGAATTGCTTACATTAAGCCTTCCAAATATACCACCCTTTTTTTTTCGTGATCGTTGTTGCTTTGAAGAATGGTTGGAAAAATGGGGAAAAGCAGAGCAGGCACTGTCTGTTGATTGTTCTCAATCAGGCATCCACCATTTCCACTCGGTTTTGTGCCTCTTCAATATCTCCAATAGCAGAATAAACGATACAGCCATTGAATTACATTTCACGTTGCTGAAGCTGCCGGAGGAATCAGGGACGAGGGAGGCCCTCTCTCTCTCTCTCTGA

Protein sequence

MRWCLCSLSINVACELLTLSLPNIPPFFFRDRCCFEEWLEKWGKAEQALSVDCSQSGIHHFHSVLCLFNISNSRINDTAIELHFTLLKLPEESGTREALSLSL*
Homology
[Close]
BLAST of Csa1G028060.1 vs. TrEMBL
Match: A0A0A0LQ51_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G028060 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.2e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MRWCLCSLSINVACELLTLSLPNIPPFFFRDRCCFEEWLEKWGKAEQALSVDCSQSGIHH 60
           MRWCLCSLSINVACELLTLSLPNIPPFFFRDRCCFEEWLEKWGKAEQALSVDCSQSGIHH
Sbjct: 1   MRWCLCSLSINVACELLTLSLPNIPPFFFRDRCCFEEWLEKWGKAEQALSVDCSQSGIHH 60

Query: 61  FHSVLCLFNISNSRINDTAIELHFTLLKLPEESGTREALSLSL 104
           FHSVLCLFNISNSRINDTAIELHFTLLKLPEESGTREALSLSL
Sbjct: 61  FHSVLCLFNISNSRINDTAIELHFTLLKLPEESGTREALSLSL 103

[Close]
BLAST of Csa1G028060.1 vs. NCBI nr
Match: gi|700208832|gb|KGN63928.1| (hypothetical protein Csa_1G028060 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 4.5e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MRWCLCSLSINVACELLTLSLPNIPPFFFRDRCCFEEWLEKWGKAEQALSVDCSQSGIHH 60
           MRWCLCSLSINVACELLTLSLPNIPPFFFRDRCCFEEWLEKWGKAEQALSVDCSQSGIHH
Sbjct: 1   MRWCLCSLSINVACELLTLSLPNIPPFFFRDRCCFEEWLEKWGKAEQALSVDCSQSGIHH 60

Query: 61  FHSVLCLFNISNSRINDTAIELHFTLLKLPEESGTREALSLSL 104
           FHSVLCLFNISNSRINDTAIELHFTLLKLPEESGTREALSLSL
Sbjct: 61  FHSVLCLFNISNSRINDTAIELHFTLLKLPEESGTREALSLSL 103

The following BLAST results are available for this feature:
BLAST of Csa1G028060.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ51_CUCSA3.2e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G028060 PE=4 SV=1[more]
BLAST of Csa1G028060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208832|gb|KGN63928.1|4.5e-54100.00hypothetical protein Csa_1G028060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G028060Csa1G028060gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G028060.1Csa1G028060.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G028060.1.utr5p1Csa1G028060.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G028060.1.cds1Csa1G028060.1.cds1CDS
Csa1G028060.1.cds2Csa1G028060.1.cds2CDS
Csa1G028060.1.cds3Csa1G028060.1.cds3CDS