Csa1G014350.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G014350.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 1869532 .. 1872628 (-)
Sequence length237
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATAAGGTATGTTTAGGAGGAACAAATTGTATTAGCACCAAAACACATTTGCTTTCGTACTTCTGTAGATTATTTAACTCAAGTAGGATGAGTACATATGTTCAAAATTTTGTACAAGTTTAGGTCATGTCTTGTATATTCCTTGTGTTAACGATGACAAGGAAATGTTAATGTTGAGCTTCTAAATGACAAAGAATTGTTTCACAATCTGAATTTATTTGCAGGGATGAGTACTGTAAAATCATGAGTTTGTGCTAACTTCTTGAAAAATGGATTTTGAGGCTTGTTTTCAGTGAGATTGATCTTGAGCTTTGGGGGGATCCTTATTTTCTATCTGCAACATTTTGACTGTGTTAGGAAAAAAGGATAGACCAGCCTCTGAGTTCGTAACTCTTTGACTGGTTATCAACGTTGCTGCAGAATCCTGAAGAGAAAGGGAGCTTAGAGAATTATCGCCTCTGTAGATGAAATTTGACTACTACCCTCTAGTTTAATCTTATGCAAGCATGATTTTATGTTTTCTAGAAGAGAAGCTAGAGAGGTTAATGTTGGCAGTTGAATGTTAGTCTGATCTTTTCTTGAATTTATAATCTGTTTGAGGGGTGGTGAGAATTATTGCAACTGATTGAGATATAAGTTTGGCAGTCGAGCTTCCTTTTCACTTGAATTGAAGGATGATAATTTTCGAAGCTTTACCTTGTTCTTAGAGTAAGACACTCTTGTTACAACACGACACCTGTCATGTCTTTTACTGTTAAGCCACGAAGGGATATATAGTAGTTTCCTCTAGCTACAATCTGGTTGCACTGTAGTTAAAGGCTAGAATCTTGCTAATCTTGTTCCTTGGTGATTCATTTGGATCCGTAGTAACTTGTAATGTTGTTGAGGGTATAGGATCCAGGTAGATTGTAAAGCATCAGTAGTTAGGAGCAACTTTTTTTTTTTATATTTATTCCATCTGATTCATTTATTAATCTAATGTGATAGTGCTAACATATTTTGTAACGTTTAGGGTGAACAAAAGACGAGCTTAGTTGGGATTAAACGATGGTATATATTTTAAATATGTGGTCATACATTGATATATATATATCACTTAAGTTATACTTAATAAATTCACAATTAAATGGGAAGATAGGTGGCATACCGAATTTAAATGTACACTCCATTTAATCGTTGCAGTGGACGCAGACAGATACAACATCAGACGTTGTATAATTTCTTCTTTACATTCAATGATCTAACATTATTTGGCACACATCCACAGTATGTATTCTCACAATGAAATGTTCAACGTCAATATTATTTATAAAGTTACATGAACCATACAAAATAGCATATACCAATCTCATTAGGAATACACACTTAGTCAGAAGACAGAGTTAAATTTTCTAATTTTAAATATTTTTGTAAAGTTTTTCATATTCTTTTACTTATTCAACTATCTATCAAAATCAACATTGATTCTATGGTTATATCAAAATTGAATCTCATATCATTCTATCAATATTCTAATCGTCGTAGACTTTAAAATATAAACCTATTTTTGAAGGTTAAGGTAGAAATGACACACAAAGCCTGAAACAAAAGAGAACAACACTTGTTTGGTGATACGAATAGTATAACCTTAATGAGAATTTAACAAAACCAAACCGGATTATCTTTATCCAAGAATAAACGCTTCGAATTCGGTAAATACCAAAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGGTTTCTTTTTCATCTCTAGTCTCCGTTTTTCCTGATTTTTTTTTTTGCTTCAATTGTCGCATTGATTATTTGCTGTTTTTTTCTTTTGTGTTCTCGGCTTCTTCTTCCTGTTCTTAATGTTTCTTCTCGTCTTTACGGTTGGGAATGAAGTGTAAAATTAGAGGCTGAGCTACACAACATATGGTGGAGCAGAGACATGGTTGTTTAAGAATTCGGTTGTCTTGATATTGGAGGAAAGAGATTCCTTTTAGTTTGTTTAGTCTTCTGTTGGGTCTGGAAAACAGTTGATAATACTGTGAATAGGGGATATGCACAAGGGCATTGAGTCATTAGGAGTTCAGAACATAAATTCATAATATCTGGTGCACTTCGGTGTACCTTATCCTTTAGGGACCTACTTTGAATTTTACAGATGCCTCGAGTGCATTATATTTTTATTGTTTGCATGTCAGTGTACCTATACGTGACTTTAGGATTTTTATTTTGCTAACAATAAGTTCCATTTTAGATGTTCGATTATGTAATGGAAAAATTGGAAAGGGTTGTTTTAACTTACTTTTTTTTTAATCTTTTGTTGTCTTAGATTGTAATGTTATTTCACCGTATATTAGTAATTTGAGAAGTTCCATTTTTCTTTAGGAAAATTTATTTGTTCTATGTTTACCTCTGTTCCCGATTGAAATTATATATGGGCTGATGGGAGTTATCTGTTGGTTTGTTGTGATTAGACTCGGGCAGGGAAAACTTATTTTTGGTATTTGGGAAATGTTTTTACACTAATGGAATGGTTTGCTTTTTATTACAAATGTAATTCTTTTGGTGTTTAGGGTTCTCCCCTGTTTACAATTATTAATGAAACGTTTATTTTATCAAAAAAAAGAAGAAGATATAATTCATTCATAATATGAAATTAATTGGCTTGGAGCCGCACAAACCCAAAGGAGATGAAAGATGACTATCATGCCCATTAAATTTTGAGAGCTTATAACTATTGGATCCATTTTTATATACAATATACTTTTGACCATGTATCACATGTTTTGAAATCTCTCTTGTTTTCATTGATATAGAATTATTTCAATTTTCAATTGAAAAACTGGTGGAATTATGTCTCATGGAGTTCATTTGGTGTCTTTCCATATGTTTTTTTTTTTCTGCTGCCATTGAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

mRNA sequence

ATGGATATAAGGATCCAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

Coding sequence (CDS)

ATGGATATAAGGATCCAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

Protein sequence

MDIRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHFQFLKFTTKSKDGILE*
Homology
[Close]
BLAST of Csa1G014350.1 vs. TrEMBL
Match: A0A0A0LPK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014350 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.1e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MDIRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDL 60
          MDIRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDL
Sbjct: 1  MDIRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDL 60

Query: 61 DHFQFLKFTTKSKDGILE 79
          DHFQFLKFTTKSKDGILE
Sbjct: 61 DHFQFLKFTTKSKDGILE 78

[Close]
BLAST of Csa1G014350.1 vs. NCBI nr
Match: gi|700208642|gb|KGN63738.1| (hypothetical protein Csa_1G014350 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.8e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MDIRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDL 60
          MDIRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDL
Sbjct: 1  MDIRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDL 60

Query: 61 DHFQFLKFTTKSKDGILE 79
          DHFQFLKFTTKSKDGILE
Sbjct: 61 DHFQFLKFTTKSKDGILE 78

The following BLAST results are available for this feature:
BLAST of Csa1G014350.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPK0_CUCSA6.1e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014350 PE=4 SV=1[more]
BLAST of Csa1G014350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208642|gb|KGN63738.1|8.8e-34100.00hypothetical protein Csa_1G014350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G014350Csa1G014350gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G014350.1Csa1G014350.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G014350.1.cds4Csa1G014350.1.cds4CDS
Csa1G014350.1.cds3Csa1G014350.1.cds3CDS
Csa1G014350.1.cds2Csa1G014350.1.cds2CDS
Csa1G014350.1.cds1Csa1G014350.1.cds1CDS