Csa1G000590.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G000590.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 59163 .. 62184 (+)
Sequence length279
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTGAGCATAATGGAGCACAAAGGAACTTAGTGAAAGCACGAGAGGAGTTCATAGGACTCTTAGAGGAAGGCTTTTGAGCGACTTAATACCAAATCGTTTAGATTATAAATATATGAGAACCATAAAGAAAAGGTTGAAAATTTTAACAGGCGCACCAAATCAAATGTCTTAACTGTTATGACAATAATGACATAACTGTCTATCTAGCCTTAACTCGACGGTTTTTGTCACAGCCCCATCCGGAACGTACCATCTATGTACTGAGTGTGGATATGACTTGGGCGAATCGACGATTCGTGGTGAAACGCCATTACCCCTAGGTACTTATTTAATTTTAAACTAAACCTTAGGCGTGATCATGCCAGTGAAAAGCTTCTAATATGCTGAAATCAGGCAAAATAAAAAAATTAGTAATTCCTTTATTAACAACTTGCTATAACACAAACACACAACTTACAATTTAAAGTAGGGAAATTGTAATGGATAACCATTTCAGCAATAATAATTAAGAATATAACAAAACTTTAAAAAAATTGCAAATATAGCAAAACTATCACTGATAGACTTGTATCGCTGATACATTTCGTATAGTCTATCAACGATAGACCATGTTGCAAATTTTGTATCATTTATAGAATTTAACAAATTTTGCTATATACTTAATTATTTTGAATCTAATTGCTAAATTTGTAACTATCCCTTTAATGTATTACAAAACTTAAGCTAAGTACCACTATGCGACACATCAAGTACTTAGCCGCTGCCTCCTCTTGTCTCGCTTGATGCCACTTCTTCGCTTAACATGAGAAGGGGAAACTTGAAACACAAGCTAATAGCTTAGTGAGTGAAAAAGATTTAGAAATACAATTACATACAATAAAAGCTTTCTTATTTTCAGAAACATCTTAGTGCCTCACTAATTGTTAAACAACACAATTGTCACATTAGCCTTTACTTATTCATAATGCATGGATATTGAACTTCCTCAACGCAAGGACCACGATGGTGAGTACTACTTTCTCATCAACATCCCTACGAACGCTCATTTAGTACCAGTTGCTCGACAATTGACCTGAACACGAACCACTCAACGTGCTTAGAAATTCTTATACCAAGCGGACAATTCAACACATGGCAACCTCTACTCTTATGTGCAAATAATAGTTTGTTTTTTCTTATCAAGAATACTACTAATGGTTTTGTATTCATGCAAACATCGCAACAATACAACTTCACAAACATAGACATACTTCAAATTGGTCACGTTCTTGTATATATATGCGTGTGTGATATTACAACATGAGCATATCTAACAACATGACTGATGATAAAATATTTATCAAAAGCTTGCTTTTATTTTGAACGGTAACTCACTCAACTAAGCGTTTCTCTCCTACCACCTACCTCTTTTTCCCTCTTGTCGTCTGGTCCTACAACGAAGCTTCACATTTGATAAAGCTTCCTCTTATCTAAACACTTGAATTAATCATTTTTCAAACTTATTTATACTCTCCCCAAATCAAGTTTGTCAACATTACACTTATCCTAATCTCGATAGCTCCTACTTAGTGCGTTCCACGTGTTAGTTTAGTATACTTCTTAAATCATGCTTAACTTAAACTTAACCCATGTTTAGCTGACTAATCAGGCTCCTCCTTGCCTATCTCGTCACTTAATAATTGGTTAAGTATTCGTTGCTACCTTCCCCTCTTGCGTTATCTTGTTGTATCGTGTTGATTTTCTTCATAACGCGTTCATTGATTCTTTCGCCTTCTGCCTCATTCCTCGCATTATCTCAAAACACCTACTCAAGTTAACTTCAAAAATTAATTTACAAGAAACTCCTTCTATTATGATGCAAGTTTTGTAGTTTTCCAAAATTTAAGAGAGACATTGTGAACACACAATTAACTTTAACAATCTACCATCCTATATAGACAATAAAAGTCATTGGTTGAGGGTGTGGATGAATACACTATTGAACATTACGTGGCTAGACACTATATCGATGCTTATGGTTTGATTCATTTTTTTGAACGTTAACACATGTTACAACCCACGAAAGAGCAAACATGGATAATTGAACACCACAACATCATAGGTTATGAGAGATCTTTTTAAAATTTAATGTTGAAGTAGAAGTTAAAAAGAGAAATGGTAACTAATAGGCAGAGAAATATAAAAGAGATATTTGTATTATTTGGAAAAATTGGAGTGGAGTGTTGAAAAATGACTTGTAATATTTGTGGACACGAGACAGGCACACCACATCTTTGTATTTTATATACGTTAGAGCGGAAGCCGAATTATCAAAGAAACTACTCATCGCCATCATCATCGTCATAATAATAACAAATAGAAGAGAGGCTCTTCCTCTCAGTCTCATCTTCTCCGCCCTTCCATTTCCACCGAACGCCTTATCAGTATCAAGGTTTTTCTCTCTCCTCTCCCTGTGCGCTGTCTTTCTTTTTTCTTTTAATTTTTAACCTTTACCCTTTCCCCTCACTATTTCCTTTATCTCGATTACGCTGTTTTTCGCTTCTTCCCCATTGAATTCACTTCTTTTTAGCTGTTTATGGCAACCGGGTTTCCCCCTGCTTGCGTCCATCCTGTTTCCGTTCATAGATTCATAAGATCATATACCCATCCCTATATTTTATCATAACAACCTTTAGAAGCCCTAATTCATAAAACTCTACTCACTTTTATAGCCTTTAAGATTCTGTTCTTGTCCACTCATTATCTACAGTTTCTTTAATGTTTTGGTTCCCTTAAATGTCAAAATCGAGTATTTTATATATATACATATATATATTTTTAATTTCAAATTTAATGGATTACGTTCTGGTTACCAGCACTAGCAACACCTCCTTTGAGATCTTCCATTAACATCTTTTTCTTTAAACGCTGACAGGCTGTGGATATCATGGCTAGAGTTCTGGTTCAGTCGACAAATATTCCTGGTTTGGTCGGTGGGAGAAAGAATGGCCTTACAACAAGGGGGTCGGCAAATGTAA

mRNA sequence

ATGAGGCACACCACATCTTTGTATTTTATATACGTTAGAGCGGAAGCCGAATTATCAAAGAAACTACTCATCGCCATCATCATCGTCATAATAATAACAAATAGAAGAGAGGCTCTTCCTCTCAGTCTCATCTTCTCCGCCCTTCCATTTCCACCGAACGCCTTATCAGTATCAAGGCTGTGGATATCATGGCTAGAGTTCTGGTTCAGTCGACAAATATTCCTGGTTTGGTCGGTGGGAGAAAGAATGGCCTTACAACAAGGGGGTCGGCAAATGTAA

Coding sequence (CDS)

ATGAGGCACACCACATCTTTGTATTTTATATACGTTAGAGCGGAAGCCGAATTATCAAAGAAACTACTCATCGCCATCATCATCGTCATAATAATAACAAATAGAAGAGAGGCTCTTCCTCTCAGTCTCATCTTCTCCGCCCTTCCATTTCCACCGAACGCCTTATCAGTATCAAGGCTGTGGATATCATGGCTAGAGTTCTGGTTCAGTCGACAAATATTCCTGGTTTGGTCGGTGGGAGAAAGAATGGCCTTACAACAAGGGGGTCGGCAAATGTAA

Protein sequence

MRHTTSLYFIYVRAEAELSKKLLIAIIIVIIITNRREALPLSLIFSALPFPPNALSVSRLWISWLEFWFSRQIFLVWSVGERMALQQGGRQM*
Homology
[Close]
BLAST of Csa1G000590.1 vs. TrEMBL
Match: A0A0A0LNF0_CUCSA (Inner-membrane translocator OS=Cucumis sativus GN=Csa_1G000590 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MRHTTSLYFIYVRAEAELSKKLLIAIIIVIIITNRREALPLSLIFSALPFPPNALSVSRL 60
          MRHTTSLYFIYVRAEAELSKKLLIAIIIVIIITNRREALPLSLIFSALPFPPNALSVSRL
Sbjct: 1  MRHTTSLYFIYVRAEAELSKKLLIAIIIVIIITNRREALPLSLIFSALPFPPNALSVSRL 60

Query: 61 WISWLEFWFSRQIFLVWSVGERMALQQGGRQM 93
          WISWLEFWFSRQIFLVWSVGERMALQQGGRQM
Sbjct: 61 WISWLEFWFSRQIFLVWSVGERMALQQGGRQM 92

[Close]
BLAST of Csa1G000590.1 vs. NCBI nr
Match: gi|700208339|gb|KGN63435.1| (Inner-membrane translocator [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MRHTTSLYFIYVRAEAELSKKLLIAIIIVIIITNRREALPLSLIFSALPFPPNALSVSRL 60
          MRHTTSLYFIYVRAEAELSKKLLIAIIIVIIITNRREALPLSLIFSALPFPPNALSVSRL
Sbjct: 1  MRHTTSLYFIYVRAEAELSKKLLIAIIIVIIITNRREALPLSLIFSALPFPPNALSVSRL 60

Query: 61 WISWLEFWFSRQIFLVWSVGERMALQQGGRQM 93
          WISWLEFWFSRQIFLVWSVGERMALQQGGRQM
Sbjct: 61 WISWLEFWFSRQIFLVWSVGERMALQQGGRQM 92

The following BLAST results are available for this feature:
BLAST of Csa1G000590.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNF0_CUCSA1.0e-43100.00Inner-membrane translocator OS=Cucumis sativus GN=Csa_1G000590 PE=4 SV=1[more]
BLAST of Csa1G000590.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208339|gb|KGN63435.1|1.4e-43100.00Inner-membrane translocator [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G000590Csa1G000590gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G000590.1Csa1G000590.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G000590.1.cds1Csa1G000590.1.cds1CDS
Csa1G000590.1.cds2Csa1G000590.1.cds2CDS
Csa1G000590.1.cds3Csa1G000590.1.cds3CDS