CsGy7G018050.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTTGTTTTCTTGTTTTTGTGTATGATGATGAAGCTTAGAAAGAGAGCTTTAATGGAGGCTAATAATAATAATAGAGCTGGAGGAGAAATTAGAAAAGTCCATATTATTTACTTTCTTTCCCGTATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGAGGAAGCGCCGGCGTTTATCTTCGAGGTCTGTGCTCTGGGATTTTTCTAATTTTCTTCATTCGTCTCCTTTCTTGCCATTGAATTATCATTGAAGTTAATGTTATAAATGTATAACATAATTTATGGGCCTTAATGTTTGAATTTAATTGTGATTTTAAATTAGCAGTGTATTAGAACACACGCTATTATTCTTAAATGTTATTTCTTAATCTCTAATTAAAATTTGTTTATTTGTTCAAGTACATCAATTGCAAAAATGAGGAAATAAGTATTCAACTTAGACTTCATACTATTATTGATATCTATAATCACTTATTATATCATTTTAGGATTTAAAATTTAAACAGGAGTTGTTTTAGTTCAATTATTGTTGCATGAGTGTGAATGGAAACATCTAACATTTTTAATAAATAAGTTATAATCTTCGAATTGATTTGTTTTCGGCTAATTTAACATCTAACTTATAAATCATAATTAATATGAAATGAATATTTTTCTTTTTTTGTGTGCGTGTGTGTGAAGATGTAAAGAGATGGCTTGGGGAATTGAGAGGAAAGGAAATGGCAGAAGCCTTCTCATGGTCTTACAAAAGGTAAGTAAAAACACACACATTTGTCCTCTTTCTTTCTTCATACTAAATCTGGAGGATGAAACAAGAGTCTATCTACGAAGCTAAAACATTATTAATTAATAAACCAAGTCGTTACTTTGAAGTTTTTATTTTCTGTTCATCATTGATAGTTGATTTTGTAAAGTATATATATACACACACACACATACATGGCATGCAGAAAGTACAAAACAGGGTACGTTTGGCAAGATCTGGTGGATGACGATCTCATAACTCCAATTTCTGACAACGAATATGTTCTTCAAGGATCCCAAATCATATTTCCCTCTACTCTCTTTGGTAATTATTATTTTTCATCTCTCATTTCTGCCCTCCCTCCTTTTCTTTTCTTTTTCTTAATTTCTAATCTTTAATATATACATACATTTCTTTTTCTTCACAGATACTAAAACATCATTATTCAGAGAAGAATTGGAAGTAAGTGAAGATTTTTCATCCAAAGTTCAGAAAGCGAATGCAGAACAATCTCCACCGTGTGATTCGGAGAGATCGACAGTAACCGACGATGGGGATTCGATGAAGGTTGAAGAAGAAACAGCTAAGAATTTGGAGACAAACCAAAAACAGGGGGTAGAAGAAGAAGAAGTACAGGATATTGAAGGGGTTAAGACACAATATTCTTCTTCTTCTTTGTATGCAAAATTGGCGAACAACAAGAAGGAGAAAGATAAAGATAAGGATCTCATGGGAAAAGAAGGTAAAATTTCACTCTTATATCTCTTAATGTCTTTACTTATTTTTCACCAACTTATTAATCATTCAAAATTTATACCACAAGTAATAAATAAAAATAAAGCCTTATAGTTTCTAATAATTTTCATGTAAAATTCGAAAAAATGAACAGGTGGACCAACAGCCACGTCGACAGTTTCGTCATCAGCCCAACCGGCATTTACAAAGAGCAAGAGCTACTCAAGCGGGGCTTCTCACGTGTTTCGCCAATTGATCACTTGCGGGAACGGGGCAGAAGATACCAACGACACCGTTTTGGTGAAGAACCGATCTCAACCCAAAAACGATGCCGTGATTTGTAGGGACGAGGTGTTGGGTGGCTCCGCCCGAGTCATCGGAAATTCTTGGGATTTTGGGAACCTCGAAATCCGCCGTCAAACTTCTCGGTAATTTTCTAAACTTCCCTTTTCCATTAACCTTTCCAAATCTAAATTAATTATATATATAGAAAACTTCTTGAAAATAATTAAATACCTCTTTCCCCACTATTAATTTAGTTCAATTTTGAATCTCAAGTTAAACTAGTTTATTAGTATTATACCAACATTTATGATACTTTTATTATATTAATTTTTCCTCTGTAATTTAATGAAAATGTTAGATGTAAAGCCTCTCATCTTTCAAAATATAACTATATAATTTACTCATAGAAAATTTTGATCATGAATAAACAAACTACAAATAAATGAAGTATCTCGATCGTATTTACAGAAAAAGTGTTGATGATTTAAGAAAGAAGAGACCAAAAGAAAATGGCAATGGAAAGGTGAACGCAACGGCAACTTACAAGCCAATGGCAGGACCAAATTGCTCGTAAGTTTCCATATCATTTAATCATGAAAGATCAATTTTTCATTATTTATTATTTATTATATTTTACTTTTTCATGAAAATGTTAAAAGTCGCTCTCTCAAGTATTTTTAAAAGCTTTCATGTAAGAAGCAAGCTATTTGTAAAAGCTATGAAATATATGTTTTTAAAAGAAAAGGAAAAATACCTTTTGAAATTTGAACTTATTGTTCTACCGATTTGTGTACAAACATAACCAAATGGCAAGAGAGTTTCTGTCTTACTAAAGTTTAAAATATTTCTTAACTACTCTGTCATTTTAAAACAGTTTTTAACTATGATAAATATGTGTTAAGTCATAAACTATGAATTTTCTCGTTCTTTAATCTTTAATTATGTATGTTTACTTAATTTATCTATTTAATATTTAATACAAAGTCAAAACTTAGTTTATAGTTGAAATACAATATATATTAGAAGTTGTAATATTGAAATGGTTTATACATAGGTTATGTGGGAAGAGTTTCAGGCCGGAGAAGATGCATTCACACATGAAATCATGCAGAGGAATGAAGTGTTTGACGTCCAAGAATAATAATAATAATAATAATAATAATACTGCTACATCAGACAAAAGCACTTTGTCTAAATCAACTACATCCGACAACGATTTGGTTTCCACTTACATGTTGACCAACTGA TTTTGTTTTCTTGTTTTTGTGTATGATGATGAAGCTTAGAAAGAGAGCTTTAATGGAGGCTAATAATAATAATAGAGCTGGAGGAGAAATTAGAAAAGTCCATATTATTTACTTTCTTTCCCGTATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGAGGAAGCGCCGGCGTTTATCTTCGAGATGTAAAGAGATGGCTTGGGGAATTGAGAGGAAAGGAAATGGCAGAAGCCTTCTCATGGTCTTACAAAAGAAAGTACAAAACAGGGTACGTTTGGCAAGATCTGGTGGATGACGATCTCATAACTCCAATTTCTGACAACGAATATGTTCTTCAAGGATCCCAAATCATATTTCCCTCTACTCTCTTTGATACTAAAACATCATTATTCAGAGAAGAATTGGAAGTAAGTGAAGATTTTTCATCCAAAGTTCAGAAAGCGAATGCAGAACAATCTCCACCGTGTGATTCGGAGAGATCGACAGTAACCGACGATGGGGATTCGATGAAGGTTGAAGAAGAAACAGCTAAGAATTTGGAGACAAACCAAAAACAGGGGGTAGAAGAAGAAGAAGTACAGGATATTGAAGGGGTTAAGACACAATATTCTTCTTCTTCTTTGTATGCAAAATTGGCGAACAACAAGAAGGAGAAAGATAAAGATAAGGATCTCATGGGAAAAGAAGGTGGACCAACAGCCACGTCGACAGTTTCGTCATCAGCCCAACCGGCATTTACAAAGAGCAAGAGCTACTCAAGCGGGGCTTCTCACGTGTTTCGCCAATTGATCACTTGCGGGAACGGGGCAGAAGATACCAACGACACCGTTTTGGTGAAGAACCGATCTCAACCCAAAAACGATGCCGTGATTTGTAGGGACGAGGTGTTGGGTGGCTCCGCCCGAGTCATCGGAAATTCTTGGGATTTTGGGAACCTCGAAATCCGCCGTCAAACTTCTCGAAAAAGTGTTGATGATTTAAGAAAGAAGAGACCAAAAGAAAATGGCAATGGAAAGGTGAACGCAACGGCAACTTACAAGCCAATGGCAGGACCAAATTGCTCGTTATGTGGGAAGAGTTTCAGGCCGGAGAAGATGCATTCACACATGAAATCATGCAGAGGAATGAAGTGTTTGACGTCCAAGAATAATAATAATAATAATAATAATAATACTGCTACATCAGACAAAAGCACTTTGTCTAAATCAACTACATCCGACAACGATTTGGTTTCCACTTACATGTTGACCAACTGA ATGATGATGAAGCTTAGAAAGAGAGCTTTAATGGAGGCTAATAATAATAATAGAGCTGGAGGAGAAATTAGAAAAGTCCATATTATTTACTTTCTTTCCCGTATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGAGGAAGCGCCGGCGTTTATCTTCGAGATGTAAAGAGATGGCTTGGGGAATTGAGAGGAAAGGAAATGGCAGAAGCCTTCTCATGGTCTTACAAAAGAAAGTACAAAACAGGGTACGTTTGGCAAGATCTGGTGGATGACGATCTCATAACTCCAATTTCTGACAACGAATATGTTCTTCAAGGATCCCAAATCATATTTCCCTCTACTCTCTTTGATACTAAAACATCATTATTCAGAGAAGAATTGGAAGTAAGTGAAGATTTTTCATCCAAAGTTCAGAAAGCGAATGCAGAACAATCTCCACCGTGTGATTCGGAGAGATCGACAGTAACCGACGATGGGGATTCGATGAAGGTTGAAGAAGAAACAGCTAAGAATTTGGAGACAAACCAAAAACAGGGGGTAGAAGAAGAAGAAGTACAGGATATTGAAGGGGTTAAGACACAATATTCTTCTTCTTCTTTGTATGCAAAATTGGCGAACAACAAGAAGGAGAAAGATAAAGATAAGGATCTCATGGGAAAAGAAGGTGGACCAACAGCCACGTCGACAGTTTCGTCATCAGCCCAACCGGCATTTACAAAGAGCAAGAGCTACTCAAGCGGGGCTTCTCACGTGTTTCGCCAATTGATCACTTGCGGGAACGGGGCAGAAGATACCAACGACACCGTTTTGGTGAAGAACCGATCTCAACCCAAAAACGATGCCGTGATTTGTAGGGACGAGGTGTTGGGTGGCTCCGCCCGAGTCATCGGAAATTCTTGGGATTTTGGGAACCTCGAAATCCGCCGTCAAACTTCTCGAAAAAGTGTTGATGATTTAAGAAAGAAGAGACCAAAAGAAAATGGCAATGGAAAGGTGAACGCAACGGCAACTTACAAGCCAATGGCAGGACCAAATTGCTCGTTATGTGGGAAGAGTTTCAGGCCGGAGAAGATGCATTCACACATGAAATCATGCAGAGGAATGAAGTGTTTGACGTCCAAGAATAATAATAATAATAATAATAATAATACTGCTACATCAGACAAAAGCACTTTGTCTAAATCAACTACATCCGACAACGATTTGGTTTCCACTTACATGTTGACCAACTGA MMMKLRKRALMEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAEAFSWSYKRKYKTGYVWQDLVDDDLITPISDNEYVLQGSQIIFPSTLFDTKTSLFREELEVSEDFSSKVQKANAEQSPPCDSERSTVTDDGDSMKVEEETAKNLETNQKQGVEEEEVQDIEGVKTQYSSSSLYAKLANNKKEKDKDKDLMGKEGGPTATSTVSSSAQPAFTKSKSYSSGASHVFRQLITCGNGAEDTNDTVLVKNRSQPKNDAVICRDEVLGGSARVIGNSWDFGNLEIRRQTSRKSVDDLRKKRPKENGNGKVNATATYKPMAGPNCSLCGKSFRPEKMHSHMKSCRGMKCLTSKNNNNNNNNNTATSDKSTLSKSTTSDNDLVSTYMLTN
BLAST of CsGy7G018050.1 vs. NCBI nr
Match: XP_004136105.2 (PREDICTED: uncharacterized protein LOC101207468 [Cucumis sativus]) HSP 1 Score: 725.3 bits (1871), Expect = 1.2e-205 Identity = 402/406 (99.01%), Postives = 402/406 (99.01%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. NCBI nr
Match: XP_008461226.1 (PREDICTED: protein UPSTREAM OF FLC isoform X1 [Cucumis melo]) HSP 1 Score: 653.3 bits (1684), Expect = 5.6e-184 Identity = 354/424 (83.49%), Postives = 365/424 (86.08%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. NCBI nr
Match: XP_008461227.1 (PREDICTED: uncharacterized protein LOC103499876 isoform X2 [Cucumis melo]) HSP 1 Score: 642.1 bits (1655), Expect = 1.3e-180 Identity = 351/424 (82.78%), Postives = 362/424 (85.38%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. NCBI nr
Match: XP_008461228.1 (PREDICTED: protein UPSTREAM OF FLC isoform X3 [Cucumis melo] >XP_008461229.1 PREDICTED: protein UPSTREAM OF FLC isoform X3 [Cucumis melo]) HSP 1 Score: 636.7 bits (1641), Expect = 5.4e-179 Identity = 344/414 (83.09%), Postives = 355/414 (85.75%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. NCBI nr
Match: KGN45183.1 (hypothetical protein Csa_7G430180 [Cucumis sativus]) HSP 1 Score: 577.0 bits (1486), Expect = 5.1e-161 Identity = 330/334 (98.80%), Postives = 330/334 (98.80%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. TAIR10
Match: AT1G05577.1 (Domain of unknown function (DUF966)) HSP 1 Score: 213.8 bits (543), Expect = 2.1e-55 Identity = 160/374 (42.78%), Postives = 207/374 (55.35%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. TAIR10
Match: AT2G28150.1 (Domain of unknown function (DUF966)) HSP 1 Score: 99.0 bits (245), Expect = 7.4e-21 Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. TAIR10
Match: AT5G59790.1 (Domain of unknown function (DUF966)) HSP 1 Score: 97.1 bits (240), Expect = 2.8e-20 Identity = 93/319 (29.15%), Postives = 146/319 (45.77%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. TAIR10
Match: AT3G46110.1 (Domain of unknown function (DUF966)) HSP 1 Score: 93.2 bits (230), Expect = 4.0e-19 Identity = 60/145 (41.38%), Postives = 78/145 (53.79%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. TAIR10
Match: AT5G10150.1 (Domain of unknown function (DUF966)) HSP 1 Score: 84.7 bits (208), Expect = 1.4e-16 Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. Swiss-Prot
Match: sp|Q9LX14|UFC_ARATH (Protein UPSTREAM OF FLC OS=Arabidopsis thaliana OX=3702 GN=UFC PE=2 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 2.6e-15 Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. TrEMBL
Match: tr|A0A1S3CE79|A0A1S3CE79_CUCME (protein UPSTREAM OF FLC isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499876 PE=4 SV=1) HSP 1 Score: 653.3 bits (1684), Expect = 3.7e-184 Identity = 354/424 (83.49%), Postives = 365/424 (86.08%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. TrEMBL
Match: tr|A0A1S3CE85|A0A1S3CE85_CUCME (uncharacterized protein LOC103499876 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499876 PE=4 SV=1) HSP 1 Score: 642.1 bits (1655), Expect = 8.5e-181 Identity = 351/424 (82.78%), Postives = 362/424 (85.38%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. TrEMBL
Match: tr|A0A1S3CEM9|A0A1S3CEM9_CUCME (protein UPSTREAM OF FLC isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499876 PE=4 SV=1) HSP 1 Score: 636.7 bits (1641), Expect = 3.6e-179 Identity = 344/414 (83.09%), Postives = 355/414 (85.75%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. TrEMBL
Match: tr|A0A0A0K6Q0|A0A0A0K6Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430180 PE=4 SV=1) HSP 1 Score: 577.0 bits (1486), Expect = 3.4e-161 Identity = 330/334 (98.80%), Postives = 330/334 (98.80%), Query Frame = 0
BLAST of CsGy7G018050.1 vs. TrEMBL
Match: tr|A0A2K2C2E1|A0A2K2C2E1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G232300v3 PE=4 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 2.7e-65 Identity = 179/396 (45.20%), Postives = 225/396 (56.82%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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