CsGy7G016780.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCCTTAACTACCTCCGGCCTCCTCAAAACCCCTCTTAAGAATTCCCAATCTCCTGCAAATTCTCTCCAATATCCACCTTTTGCTTATGGGCAACATCAACTGCCCGTTTCCCTCAAAAGGGCTTTTCCCGGACGAGCCATTAGAGCTTCACCTTCGAATTCGGGTCCATCCACGACCTCCTCACCAGGGCTGTACTCCGCTCAGAAATTTGAATTGACCATTGGAAACGTGGACTTGGTTCTTGAGGACGTAAGGCCTTATCTAATTGCAGATGGAGGAAATGTCGATGTTGTTTCTGTTGAAGATGGAGTAGTTTCCCTCAAACTCGTTGGTGGGTAGATTTCTTGTCTCGTTGAATTGAATGGGTTTGTTTTAATTTCCCTTGTTAATTTAATTTTTTGTGTTGAAATTTTTGTTACTTATAAATTGGTTGTTGTTGGGGTATGTTCTTTGGTGTTTCTATAGTTTAGCAAATTGTGTTGAATATCTTTTACACATTATGGTATTTAGTAGTATCTGCACTTTAGAGATTTGAGTCTAATTCATTTCTTTCATCGAAGCAATCCTGGGATCGTATGGTTTAGGACAAAGTTGATATCTTTGTGATTCTCGGTCTGAGTATGCCCCTTCAGCCCATCTCTTTTTACATAGCCAAATAGTTGGTGTATGCTTTCTCGACGCTGGCCCGATAGAAGTGATTCCTTTTTCTCAAAAAGAATGGTCTCTTTCTTAGCATTACTGTAACCCATTTGATCTTAGTCGTCTTGTGTGGAAGGAGCGAGATGACAGAGATTTTGCTCTTCTCACCCCTGTCCGACCACCCGATTGGTGAAGACTCGGAACAAACCACCCCGCTTTGGGAGACAACGAAGACTTTACTCGATGTCTTGATCCATCCGTAGTCTGCTAATCTGATCCCAACGTCTTTAATTCTGACGAGCTTGTCTCGGAGAGATCTCTATCTTTTGTTTGTTACACAACACTGAAGGCTCCACTAGAAAAGGAAGGAAAAAGGAAAATACCTCCAATGAGAAATCTCAAGATCAAGATTAGTAGTGCTGCAGTTCTATTTACAATCTTAAACTTTCCTAACTACAATCTTCCTCCATTAGCACTGAATCTATTGGAAATTTTGAACAGTTTAGACTTGGGCAGATGGATATGATTTTCCTTTCCTTATATGAGGGTCTTTCCAATGAAAAGGATTTACCAGAGAATAGATGATTTGATATCTATCTTTAAAGAAAACCACGAAAAGGATCCTTAATTTCACTTGTTTGTGAACACTTTTAACCAATCTTGTGGGAGATTTGGTATATATCTAACAGGAATGTTTCTCAGGACATGGGTGGGGTTCTCATGACATTTGAAGGGACTGCAGACTGATGTGGCCTTTCGGTTTCTTTCCTGCATATACTAGTTGGAGTACATTTGTTTTGTTGTCTTGGTCTAGGTAAGTTTTGGACAGCACCATCATCTTGTACATGTTACTGGTGTGTTTTATCTGTTTCTTATCAAGTAAGGTGAAAAAGGTCTCCTTGAACTAAATGGCAAAAGGAAGTCTTGTAACCCTCACTTTCATCGAAAAGGGTGTGAGTAAGAACTTTGTTGATTTGATGTTTAACTGCTTTGTATTCCCATGAAGTCATGAACAAAAAGTAATAATGATAAACATTTTTAACTAAAAATGTTTGAATCGATCTTCAGGAGCATGCGGTAGCTGCCCTAGCTCAACAACGACCATGAAGATGGGGATCGAACGTGTACTAAAGGAGAAGTTTGGAGATTCAGTGAAGGAAATATGCCAAGTATATGATGAAGAACCAAAGGAGACTACACCTGAGGTGAGTTTTCTGCAGACGAGCGAATACAAAATTGGCTGATGTCAAAATTCAAACAAAAACAAAGTGAGCTGATTTAGTTAGGCAATTTAGTATTAATCCTGGATGTTGCACAAATTCAGGCAGTAAACAGTCACCTTGACATATTGAGGCCAGCCATAAGGAACTACGGTGGGAGCGTGGAAGTAATATCAATTAATGGTGGCGATTGCCTGGTCAAGTATGAGGGTCCTGAATCTATTGGTACAGGAGTTAAAGCAGCCATTAAGGAGAGATTCCCAGATATTACAAACGTTGTGTTTTCAAGCTAA ATGGCGTCCTTAACTACCTCCGGCCTCCTCAAAACCCCTCTTAAGAATTCCCAATCTCCTGCAAATTCTCTCCAATATCCACCTTTTGCTTATGGGCAACATCAACTGCCCGTTTCCCTCAAAAGGGCTTTTCCCGGACGAGCCATTAGAGCTTCACCTTCGAATTCGGGTCCATCCACGACCTCCTCACCAGGGCTGTACTCCGCTCAGAAATTTGAATTGACCATTGGAAACGTGGACTTGGTTCTTGAGGACGTAAGGCCTTATCTAATTGCAGATGGAGGAAATGTCGATGTTGTTTCTGTTGAAGATGGAGTAGTTTCCCTCAAACTCGTTGGAGCATGCGGTAGCTGCCCTAGCTCAACAACGACCATGAAGATGGGGATCGAACGTGTACTAAAGGAGAAGTTTGGAGATTCAGTGAAGGAAATATGCCAAGTATATGATGAAGAACCAAAGGAGACTACACCTGAGGCAGTAAACAGTCACCTTGACATATTGAGGCCAGCCATAAGGAACTACGGTGGGAGCGTGGAAGTAATATCAATTAATGGTGGCGATTGCCTGGTCAAGTATGAGGGTCCTGAATCTATTGGTACAGGAGTTAAAGCAGCCATTAAGGAGAGATTCCCAGATATTACAAACGTTGTGTTTTCAAGCTAA ATGGCGTCCTTAACTACCTCCGGCCTCCTCAAAACCCCTCTTAAGAATTCCCAATCTCCTGCAAATTCTCTCCAATATCCACCTTTTGCTTATGGGCAACATCAACTGCCCGTTTCCCTCAAAAGGGCTTTTCCCGGACGAGCCATTAGAGCTTCACCTTCGAATTCGGGTCCATCCACGACCTCCTCACCAGGGCTGTACTCCGCTCAGAAATTTGAATTGACCATTGGAAACGTGGACTTGGTTCTTGAGGACGTAAGGCCTTATCTAATTGCAGATGGAGGAAATGTCGATGTTGTTTCTGTTGAAGATGGAGTAGTTTCCCTCAAACTCGTTGGAGCATGCGGTAGCTGCCCTAGCTCAACAACGACCATGAAGATGGGGATCGAACGTGTACTAAAGGAGAAGTTTGGAGATTCAGTGAAGGAAATATGCCAAGTATATGATGAAGAACCAAAGGAGACTACACCTGAGGCAGTAAACAGTCACCTTGACATATTGAGGCCAGCCATAAGGAACTACGGTGGGAGCGTGGAAGTAATATCAATTAATGGTGGCGATTGCCTGGTCAAGTATGAGGGTCCTGAATCTATTGGTACAGGAGTTAAAGCAGCCATTAAGGAGAGATTCCCAGATATTACAAACGTTGTGTTTTCAAGCTAA MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPSTTSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPSSTTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEVISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS
BLAST of CsGy7G016780.1 vs. NCBI nr
Match: XP_004135981.1 (PREDICTED: nifU-like protein 1, chloroplastic [Cucumis sativus] >KGN45036.1 hypothetical protein Csa_7G412870 [Cucumis sativus]) HSP 1 Score: 434.5 bits (1116), Expect = 2.2e-118 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. NCBI nr
Match: XP_008451442.1 (PREDICTED: nifU-like protein 1, chloroplastic [Cucumis melo]) HSP 1 Score: 425.6 bits (1093), Expect = 1.0e-115 Identity = 214/220 (97.27%), Postives = 218/220 (99.09%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. NCBI nr
Match: XP_022144330.1 (nifU-like protein 1, chloroplastic [Momordica charantia]) HSP 1 Score: 386.3 bits (991), Expect = 6.7e-104 Identity = 198/219 (90.41%), Postives = 204/219 (93.15%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. NCBI nr
Match: XP_023547622.1 (nifU-like protein 1, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 380.6 bits (976), Expect = 3.7e-102 Identity = 192/220 (87.27%), Postives = 205/220 (93.18%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. NCBI nr
Match: XP_022991837.1 (nifU-like protein 1, chloroplastic [Cucurbita maxima]) HSP 1 Score: 380.2 bits (975), Expect = 4.8e-102 Identity = 193/220 (87.73%), Postives = 205/220 (93.18%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. TAIR10
Match: AT4G01940.1 (NFU domain protein 1) HSP 1 Score: 248.8 bits (634), Expect = 3.0e-66 Identity = 142/230 (61.74%), Postives = 169/230 (73.48%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. TAIR10
Match: AT5G49940.1 (NIFU-like protein 2) HSP 1 Score: 97.8 bits (242), Expect = 8.7e-21 Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. TAIR10
Match: AT4G25910.1 (NFU domain protein 3) HSP 1 Score: 89.7 bits (221), Expect = 2.4e-18 Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. TAIR10
Match: AT3G20970.1 (NFU domain protein 4) HSP 1 Score: 54.7 bits (130), Expect = 8.4e-08 Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. TAIR10
Match: AT1G51390.1 (NFU domain protein 5) HSP 1 Score: 53.1 bits (126), Expect = 2.5e-07 Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. Swiss-Prot
Match: sp|Q93W77|NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 5.5e-65 Identity = 142/230 (61.74%), Postives = 169/230 (73.48%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. Swiss-Prot
Match: sp|Q84LK7|NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NIFU1 PE=1 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.6e-19 Identity = 70/179 (39.11%), Postives = 98/179 (54.75%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. Swiss-Prot
Match: sp|Q93W20|NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.6e-19 Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. Swiss-Prot
Match: sp|Q84RQ7|NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 4.3e-17 Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. Swiss-Prot
Match: sp|O32119|YUTI_BACSU (Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) OX=224308 GN=yutI PE=3 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 6.4e-13 Identity = 37/70 (52.86%), Postives = 53/70 (75.71%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. TrEMBL
Match: tr|A0A0A0KB98|A0A0A0KB98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G412870 PE=4 SV=1) HSP 1 Score: 434.5 bits (1116), Expect = 1.4e-118 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. TrEMBL
Match: tr|A0A1S3BQX1|A0A1S3BQX1_CUCME (nifU-like protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492737 PE=4 SV=1) HSP 1 Score: 425.6 bits (1093), Expect = 6.6e-116 Identity = 214/220 (97.27%), Postives = 218/220 (99.09%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. TrEMBL
Match: tr|M5XUC8|M5XUC8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G007000 PE=4 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 7.2e-78 Identity = 158/219 (72.15%), Postives = 179/219 (81.74%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. TrEMBL
Match: tr|A0A140B480|A0A140B480_PRUPE (NFU domain protein 1 OS=Prunus persica var. persica OX=323852 GN=NFU1 PE=2 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 7.2e-78 Identity = 158/219 (72.15%), Postives = 179/219 (81.74%), Query Frame = 0
BLAST of CsGy7G016780.1 vs. TrEMBL
Match: tr|A0A2I4DNY7|A0A2I4DNY7_9ROSI (nifU-like protein 1, chloroplastic OS=Juglans regia OX=51240 GN=LOC108982048 PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 9.4e-78 Identity = 158/219 (72.15%), Postives = 175/219 (79.91%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
|