CsGy7G008280.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G008280.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr7 : 9236428 .. 9238377 (-)
Sequence length	267

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATTTTTCAATCAAACGAAGCCAACAAAGAGAGAATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAGGTAGGAATCAAATTTTGCGTCCAATATAAGTCGGGTTTCAAGTTGGAATGGCCAAGCCGAATCAAGAACTTAACCCTCGGTTGAATGGAGAAACAAAAAAGAAGCAACAAAGAGAAGAAAAAGCATTTGATGGGCGTTAGCGTGGCGGCGTAAGGTCGCGGCAGAGAGAGGGTAAATAGTATAGGGTTCAAGTCCTTTTTTTTCTCTTTCTATTTTACATATTATAATAATAAAGGGCAAAAAAAATAAGAAATTATTATTATAATATAACAATAATTTCTTATTATTATTATAAGAAATAGAATAAATGGTGAGTATTTACGCTATATTTTGGGTTTAGATTAAAATTTTGCTATGGGTCGTAAATTGTTGGTCAATTCTTTTATTTTATAAAATTATAAAATTTCCACTTCACTTTTTTTCAATTTCTTTAGATGTTTTCTCTAATATTAGTGCTTTTTACAACTCATCCACCAAATATCACTACCTATAGGCAAGGAGAACGTGACACAACGTCACTATTTTATAGGCAACTTAGCAAGCAAGGAGGTGGTATTACATGGTCTCTCTGAGAGGCCACATGTTTGGTCTCTCTGAGAGGCCACATGTTTGGTCTCTCTAAGAGGCCATGTTTGCCTGACACATAGTGGTGGAAACTAAGAGACTATGTTTGCTTGACACATGATGGACACTAATGGATAATGTTTACTTGACACTTGGTGGACACTAATGGATTATGTTTGCTTGACACACCGAGGACACTAATAAATAATGAGCATCTATATTTTATATTAATATTTATAATAAATTATTATTATTATTAAAGTAAATTAATATTAAAATAACTAATTAATTAAATCATATTTTATTAATATTTCATTCAAGATCATGTACCAAAATATAAAAGCTCTATTTTTATTTTATTTTTTTCAAACTATTATTTGATTGTTCAAAATCGTGTACCGAATATAAGATATCTTTAAAAATTCGTTGGGATATTGATACATGAACGTTGTTTAGATTTCGTAGTTAAATCTAAACAATCTTGTACCAAAAAATCTTTTGAAAAATCGTTTAGATTTGGTACAAGATCGTTTAGAATGGGTATAAGGGTCTGTGAGCTCCTCCGTCTTCTTATGCTTGGTGATTTGAATTTATGCTAGCTTAATTCTTGTCTTCGCTAGAGACCCTACGTTCTGTCTATTTTCTTTGAATGTTTGACGAAGACGGTCATCTTCCTTGCGACCTTTGCTTTGGTTCCTTCTCCCCTCTTCCTATCTTCTTCTCCTTTCCTCGTCATGCTCGCTTTGCTCCCGCGCTTCCTTCTTCTTCTTTCTTCATCCAACCTTATCCTTTCTTATTCTTGTTTGACCCTTTCTTCTCGTTGGGCCTTCTCCTCTTTTCTTCTTTCTTCCTCTTTCTACTTATCCTCTTCTGCTTTCTTTTTCTTATCTCTTGCTCCCAACTCATCAAGAAACTTCAACACTTGGCTCGCATATTGGGCTGGTACTTTGATCTCGCCTGCCTCACTCGATTTGTCTATTTCCATAATTAGTTTGTTGGTGCCATGCTTAACGTGTTTGTAGTTCAGTTGTTCATCATCCAGTCGCATCGTGTTCACCCCACGTTCTAGATCAGTTAACCCTTGGTAAATGCTTTCTTCCCTTACAAATCATTATTCAGCTTCAAGAACTGGTTCTTTGGTATTTGCCTTGGGTCTCTAGGCTTGCTCTGAATCATGTCTGA

mRNA sequence

ATGCATATTTTTCAATCAAACGAAGCCAACAAAGAGAGAATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAGCTTCAAGAACTGGTTCTTTGGTATTTGCCTTGGGTCTCTAGGCTTGCTCTGAATCATGTCTGA

Coding sequence (CDS)

ATGCATATTTTTCAATCAAACGAAGCCAACAAAGAGAGAATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAGCTTCAAGAACTGGTTCTTTGGTATTTGCCTTGGGTCTCTAGGCTTGCTCTGAATCATGTCTGA

Protein sequence

MHIFQSNEANKERMKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRKLQELVLWYLPWVSRLALNHV

Homology

[Close]

BLAST of CsGy7G008280.1 vs. NCBI nr
Match: KGN59097.1 (hypothetical protein Csa_3G769630 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 5.2e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 14 MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRKLQE 72
          MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK Q+
Sbjct: 1  MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRKKQK 58

[Close]

BLAST of CsGy7G008280.1 vs. TrEMBL
Match: tr|A0A0A0LEI0|A0A0A0LEI0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769630 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 14 MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRKLQE 72
          MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK Q+
Sbjct: 1  MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRKKQK 58

The following BLAST results are available for this feature:

BLAST of CsGy7G008280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59097.1	5.2e-23	96.55	hypothetical protein Csa_3G769630 [Cucumis sativus]	[more]

BLAST of CsGy7G008280.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G008280.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G008280.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEI0\|A0A0A0LEI0_CUCSA	3.4e-23	96.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769630 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy7G008280	CsGy7G008280	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G008280.1.CDS.2	CsGy7G008280.1.CDS.2	CDS
CsGy7G008280.1.CDS.1	CsGy7G008280.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G008280.1.exon.2	CsGy7G008280.1.exon.2	exon
CsGy7G008280.1.exon.1	CsGy7G008280.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy7G008280.1	CsGy7G008280.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22