CsGy6G023420.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G023420.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr6 : 23634324 .. 23637946 (+)
Sequence length	222

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGATCAGATCGTTGATTCCCAGAGAAGAAACAGTTGGTCGGCGGCAAGGGGTTTTGTTCGTCGTCGTCAGCTTCTTATTTCTTCTAATATTTCTCTATGCCGCCTTTATTTCCAAGCTTCTTCCACCTTCAAACAACGCCTTCTTATCTGCTATTCAAAACGACTGGTAAAACTTTTCTAATTATCTTTGTTGTGTCTAGTCTAGTCCACAATTAGGTTCTTTGCGTTGTTATTCTGGAAAAAATAGAAGGTTGTATTGAAGTGTTAGTGTTAGTTTCTGTTTTTTTTTACTTGAATTCTGGGTTTGATCTTGATTTGGAGAGGGGAAAGGTATTGTGTACCGAATTAAGATCAAAGCAAATCTGATTAGTTGATCAATGTGAAGGAAGAGAAAGACCAGGGCCGAATAGAACATATCATACTAACTTGTAGGCTGTACATTAACCATTTGGTTTTTTATTTCTAATTTTTTAAAATCATTCTGTTTTCTCACCATTTCTTGTTCATGATTTCACAATTCCTATGTTCGACCTTTGAATTTTTAGCTAATTTTGCAAAAAGAAAAGCAAGTTTTTGTAGGCAACAAAACTTGTAAACCAATATAGTTTCAAAAACAAAGTGGTTGTAAATGGGACCTAGGAATCAGTTTCTCTTAGAGATGCTGTGGTGGTTAATGGAAATAACTCATGACTCAACTGTTTTGATATTCAAACAGCCATAATATATATGGATGACAAAATGCTGCCATCCATACTAGAGAATGAATGAGAATGACTATGTATACATCGGAGTACTAGCTTGCCTTTGAAGCAAACCAAGTTCTTGTTCCACATTTTTATGAAAACTGGTTTAGTATTGGTGCCATTGATCTCTTGAAAAGATCAAGTCTAAGTAAACTAATATGGTAACTTGTTTCTTACACTAGTATTGATCAACAGTGACCTTTATCTGTAATGCGTTTCTTCTTTCTTATTAGGCATTACTGTCTCCTTGTGCCCTTGACATTACCTATCCTTTACGTTGCCGTTTATTTCCATTGGCTGAGTATGAAACTATTCAAGCATGCTTGATCATGCCGTCGAATGAAGATGAAGGGTTCGAACTAGTTGAGTGTCTAAAACTTGGGAAGATTCAACCACCTTCTATCTTCGGTTGAATAACGATGTGATATGTTTGGAATTTTCAGTACCTAAGGCGATAGAGGATGTACAGGTGAACTACCGGAGATATATAATGATCATGCCGAGCAAATTCCATATCTGCGAGTGTCTTGGAGTGATTTTTGTAGAGGCTTTTGTTATAAAATATTCACCTATTGTTGTTGAATGATATGGGTATATTATTAACAAAACCAATCTAGGGAGAACGAAAACCAACTTAGCTTATGGTTGATATGAACAGGTCTTGCGTCTTGAAAATTGCTTGATTCTACTTTGAGTACTCCTTTTTATTTATCCTTTACGGTCAATTTCCCATTTTGTGATAGAAATTTTTTGAATCTATCAATGATACTGATAGACAATTATCACTTCCATCAATATCTATCTTTGATAGAATTTTAAATTTGCTATCTTATGTAGATGTTTTCAACAATTTTATCATTTACAGTAATTTTATACATATTTGTGTACAAAGAGTTGTGTTAGCGAAAGAAAGAAAATACAAATAAAATTTTGTAGAAAAATTGCTTTGGTGCTTTGTACTTCATAAATATAAAAGTCTTCGACTATATCGAGACTTAGACAACTGTTATTTCTCTCCAAACAATCGTAATACAATTATTGAGAGCATGCCTATAATCACAAAAATGCATGTAATCGAACTTTAATGCGTATAATAACTTTTGTCACATCTTCATAACTTCAATCGGTTGATGGACCATCAGCTGGTGCAACTTCACCACAGATTGGAGGATTTTGTTTTCCTGTAATGACGGGTTTCACATTTGCACACTGAGACTTAATTGGACCTTCTGGTCCACTATAAGTGAGGTCAATATCAGCAATTTCCACTCCCTCACATGGAATACTCTTACTGCAAACAATTTTGACTGCAATCGCAGTTGCAGACGTGCCTCTAATATTCTTGAAGCTTACATTGCTGATCTTAATTTTTGATGCAACCTGAACAACAAAGAAAACATAACAAAAATACATAACTCGAACAATATTATTACTATTGCAGTCTTTTGAGTCAGTTAATTAGTTCAAAACTAAAGAGACCTAATTTTAGCACATACCTTTCGGTTGCATTGGTTCCATGGACAATATTCTTGGTCTATGATGATAGGGTTACTGACATTATCCATTTCTATATCTTCAAAATGCATGTCTGTGGCTGGAAATGCGACGGCAGAATCTGGCCATGTTTTGATCCTAACACCGTTTGTAGTACCGGTCAATTTGCATTTTTTCACCGTAACTCCTACCACTTCTTTTTCCTTGGTATATTTTCCCAAACTTCCTATGCTAATTCCATGTCCTGGTCCGCAAGTAACATCGCTAATAGCTACTTGTTTGTTGGAATCTCCCACAGATATGCAATCATCTCCGGTTGCGATATTGGTATTGAGAATGTTAATCTGTTCTGAACTACTCACGTGAATTCCATCGGTGTTGGGACTATTGCCCGGTGCAGTAATTGTCACGTGGTCAAAGGTAAGGTTCTTGCAACCCAAAAGATTAATATGAAAATTCTTGCTATCCAATGACGTTATGCCCGTTACTATTGAATTTGTGATGAAATTGAGCTTCAAATTCTGATCATTTTAAACAAAACAAAAAAAAACCCTTGATTTAAAAACGTGTTTGATTATTGCAAAAATATGTAGTGGTCAAATTATACGTAAGATGTTAGGCTAATAACATAAGCATGTTGTAATTAAAGCATGCAATTACCATGGGAAGCTTGGTGCATTCTTTCTTCAAATGGCAATCATTCTTTTCCCAACCTGCTTTTCCTTGGCCATCCAAAACTCCAGTACCTGACACTGTCAACAGATCGGTATTTTCCAAAATGAGTAGCCCTTCTCCTTCTGGATGGGCCGGAGCTTGTAATGTCCCTTCGATTTGTAGTTCGATAGGACTTTTACAAGGGCCTTTAAGGTTGGATTGACTTAATCCGTAACTTCCTTTTGGAATCAAAACTTTACTTGGAGTGGTCGATGCACATGCCTCCTTCCATGCACTTGTCAATGCCTGTAAATTAAATCATTTTGTTTGATAACTAAAATGTTGTATAAATTAAAATCTCTCGTCCAACTAATGCAAGTATTCGTACCGCAGTTATATCTGCATTAGGTTTGGCACCGTATTTTGTGATATCGAAAACACCACCAGCACCACCTGCAGGTTGAGCTGGTTGAGCTGAAGGTTGAGCTGCAGCAGGTTGAGCTTTAGAATTAGACACCAACAATAACAACAATGGCAATATTGCCACAATGTTTGATATCAATCCCATTTTTTTCTTTTTTCTACTCTGATTGGTTCTTGTTTTCTTTTTTTTTTTTTTTATCAATGAATGATCGGTATGTTTTAAATTTTGATTCATCTAACTCTATTTATAAAGGAACAAGATTGTTGGAATTGAAATTATCTCTCAAATATTTATTAACTAA

mRNA sequence

ATGAGTTCGATCAGATCGTTGATTCCCAGAGAAGAAACAGTTGGTCGGCGGCAAGGGGTTTTGTTCGTCGTCGTCAGCTTCTTATTTCTTCTAATATTTCTCTATGCCGCCTTTATTTCCAAGCTTCTTCCACCTTCAAACAACGCCTTCTTATCTGCTATTCAAAACGACTGGAACAAGATTGTTGGAATTGAAATTATCTCTCAAATATTTATTAACTAA

Coding sequence (CDS)

ATGAGTTCGATCAGATCGTTGATTCCCAGAGAAGAAACAGTTGGTCGGCGGCAAGGGGTTTTGTTCGTCGTCGTCAGCTTCTTATTTCTTCTAATATTTCTCTATGCCGCCTTTATTTCCAAGCTTCTTCCACCTTCAAACAACGCCTTCTTATCTGCTATTCAAAACGACTGGAACAAGATTGTTGGAATTGAAATTATCTCTCAAATATTTATTAACTAA

Protein sequence

MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDWNKIVGIEIISQIFIN

Homology

[Close]

BLAST of CsGy6G023420.1 vs. NCBI nr
Match: KGN48122.1 (hypothetical protein Csa_6G434405 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 3.7e-22
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDWN 60
          MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDW+
Sbjct: 1  MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDWH 59

[Close]

BLAST of CsGy6G023420.1 vs. TrEMBL
Match: tr|A0A0A0KIB0|A0A0A0KIB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434405 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-22
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDWN 60
          MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDW+
Sbjct: 1  MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDWH 59

[Close]

BLAST of CsGy6G023420.1 vs. TrEMBL
Match: tr|A0A2P4HA94|A0A2P4HA94_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_13593 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.6e-04
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 19 GVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDW 59
          G  FV++  +F + FL+AA ISKLLPPS NA +S+IQNDW
Sbjct: 22 GCFFVIIGSVFFVGFLFAAVISKLLPPSRNALISSIQNDW 61

The following BLAST results are available for this feature:

BLAST of CsGy6G023420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48122.1	3.7e-22	98.31	hypothetical protein Csa_6G434405 [Cucumis sativus]	[more]

BLAST of CsGy6G023420.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G023420.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G023420.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIB0\|A0A0A0KIB0_CUCSA	2.4e-22	98.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434405 PE=4 SV=1	[more]
tr\|A0A2P4HA94\|A0A2P4HA94_QUESU	8.6e-04	60.00	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_13593 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR029164	PIG-Y

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G023420	CsGy6G023420	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G023420.1.CDS.1	CsGy6G023420.1.CDS.1	CDS
CsGy6G023420.1.CDS.2	CsGy6G023420.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G023420.1	CsGy6G023420.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029164	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y	PFAM	PF15159	PIG-Y	coord: 19..58 e-value: 2.0E-8 score: 34.8