CsGy6G019820.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G019820.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	E3 ubiquitin-protein ligase RING1-like
Location	Chr6 : 20412591 .. 20414750 (+)
Sequence length	1628

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGAAACTAAATAACAGAAAATTAACTCCCACTCTCTCTTCTTTCCTTCATATAATTTTTCCCTCTTTTCTTGTTATTGTTCTTCTTCTTCTTCGTTTCGCTCTGTGATTTTTTTCAATTCTTGACCTTACTTTGATCTCCCATGGCTATGGATACTCTATACGATTACCACATATGGCAACCTGAAGAAGGTGAAGATGATCTTAATGTTACCATCTCCAATTCTCACTTGCTTCCTTGTAACTGTTTCCTTTTCCACCTTCACTTCCGCCACATTCTTCAGTCAAATCACTCTCAACAATTTCACTATCTCCTAAATTCCTCTCTATCTTCTTTCTTGATACCTTGCGATGTCTTTTTCGCTACTGCCTCCAGTATCCTCATCGCTGTTTTCTCTGGCACCGGTGTCGCACAAGACTTCTTGGACACGGCTCTGCCTGACGTTCTCTCTGTCGCCGCTGATATCGCATGCAATCCTCTTAATGCTGGCCGTACCATACTTCCGTTGGCGGTGTCCGTTTTAGTTGTTTCGCCCTACAATGAACGCCAGGAAATTGGGCGAGTCTTACGGGAATCATCCCCGCAAGCGTTTAAGACGTTGCCAGCTAGTGAGATGGCAATCGAAGGTTTGAAGAACGTGGAGATTGATGTTGGTGGAGAGTTGTTGATTGGAGAATGTAGGATATGTTTGGATGAACTCATGAATGGAATGGAAGTTACGCGATTGCCGTGCGCTCATCTTTATCATAGAGACTGTATTGTTAAATGGCTGGAGACGAGTCATTTGTGCCCCTTGTGCCGGTACGCAATGCCGCTGAGCTGAATGGATAGAATTTGCAGGGATCAACGGTTGTACATGATGAAATTGAATTTACAACGGGGAATGCATGGTAAAATTTTGATGAGAATTGAATTTTGATTCTTGCATTTTTCTTAATTAAGCAAAATTCTTGAACCCTAGCTTGTAACCATTCTGTTTTCTATCAAAATTGCATAAGTGGATTAGGGCTATACATGATGAACATATATCTCTCATCTTCAATCAGTAGAAATTAAATTTAAGTTTGAAGTTCATTGGCGATATGGCTACTACGCATGATACGTTTCACTTGTTCTTCTCCCATCTGATATTTTAGAATTTAGTGGATTAGGGCTATACATGAATCCTACACAGATTGCATCTTCAATTAGCAAAAATTAAGTTTAAGTTTGAAGTTCATTAACGATACCTACTAAACATGATACATTGCACTTGCTCCACTCTTATCTGATCGTTTGTCTATGGATTATTAGTCAGAATTTTTTGCTAATCAAGATCTCTCCCGGTTCCATTTCTGGTCTGTAGTTAAAATTGTAACGAAAAAATATGTTTAGATAAAAATTTTGAAATTCTTATTGAACTTATTATTCAATTGATTGCAGGAAGCTAAATATACATTGTATAGTTATCATTTGTTGAGTATTGGGAAGATGTAAATTGACTGACCGAAGATAAAGAACCAACAACAAAGCCTAGTTTTTGTTAGTTTTCAACTTAGCTGATGTAGAGAAGCAAGAAAATAAAGTGGACTGGTCCTTGAAACTCCATTGACCTTGAAACATATAGATCAATCTAACAGATAATAGAATATGAGACAGAAGTTCAGTTTGAAGGTTGACAATGATTTTAGGATGCTGATGAAACCTTCGCGGTCACTACTTTTTGAAGAACAGCTCAATCAGAGAAGATTTTTATGGGGCAAAGCCAACCAGGGTATGGCCATGATCTCTAGAGGGGCAAATTGTTGATGTTTTTACTATTGGACAAGCTTTGTTCAAGAGAAATTTGCAGATAGAAATTCAGACAGCAAAAAGGATCGCTTGAAGAGAGACAGAGAGAGCAGGAAGCAGGGAGTATGCCTTTGCCCACATCCAGAAGAAATGCTTATGCCAATACATTGCTGACTAAGGTGAGTGCATAACATTTGTGTCTCAATTAAGAAGCAAAATATATTATGAACAAGGGCTAATTGATCATGAGACTTTATTTCCAATACTATGATGTACAGCCAAGGTAGTTTATCAAATATTTGAAATAGATTTTCTTAAAGGAAACTGTGTACTTTTCTTCTCTGAACTACTACAGAAATAGCTAGAATAAAAATACAAACTACCATAAG

mRNA sequence

CCAGAAACTAAATAACAGAAAATTAACTCCCACTCTCTCTTCTTTCCTTCATATAATTTTTCCCTCTTTTCTTGTTATTGTTCTTCTTCTTCTTCGTTTCGCTCTGTGATTTTTTTCAATTCTTGACCTTACTTTGATCTCCCATGGCTATGGATACTCTATACGATTACCACATATGGCAACCTGAAGAAGGTGAAGATGATCTTAATGTTACCATCTCCAATTCTCACTTGCTTCCTTGTAACTGTTTCCTTTTCCACCTTCACTTCCGCCACATTCTTCAGTCAAATCACTCTCAACAATTTCACTATCTCCTAAATTCCTCTCTATCTTCTTTCTTGATACCTTGCGATGTCTTTTTCGCTACTGCCTCCAGTATCCTCATCGCTGTTTTCTCTGGCACCGGTGTCGCACAAGACTTCTTGGACACGGCTCTGCCTGACGTTCTCTCTGTCGCCGCTGATATCGCATGCAATCCTCTTAATGCTGGCCGTACCATACTTCCGTTGGCGGTGTCCGTTTTAGTTGTTTCGCCCTACAATGAACGCCAGGAAATTGGGCGAGTCTTACGGGAATCATCCCCGCAAGCGTTTAAGACGTTGCCAGCTAGTGAGATGGCAATCGAAGGTTTGAAGAACGTGGAGATTGATGTTGGTGGAGAGTTGTTGATTGGAGAATGTAGGATATGTTTGGATGAACTCATGAATGGAATGGAAGTTACGCGATTGCCGTGCGCTCATCTTTATCATAGAGACTGTATTGTTAAATGGCTGGAGACGAGTCATTTGTGCCCCTTGTGCCGGTACGCAATGCCGCTGAGCTGAATGGATAGAATTTGCAGGGATCAACGGTTGTACATGATGAAATTGAATTTACAACGGGGAATGCATGGAAGCTAAATATACATTGTATAGTTATCATTTGTTGAGTATTGGGAAGATGTAAATTGACTGACCGAAGATAAAGAACCAACAACAAAGCCTAGTTTTTGTTAGTTTTCAACTTAGCTGATGTAGAGAAGCAAGAAAATAAAGTGGACTGGTCCTTGAAACTCCATTGACCTTGAAACATATAGATCAATCTAACAGATAATAGAATATGAGACAGAAGTTCAGTTTGAAGGTTGACAATGATTTTAGGATGCTGATGAAACCTTCGCGGTCACTACTTTTTGAAGAACAGCTCAATCAGAGAAGATTTTTATGGGGCAAAGCCAACCAGGGTATGGCCATGATCTCTAGAGGGGCAAATTGTTGATGTTTTTACTATTGGACAAGCTTTGTTCAAGAGAAATTTGCAGATAGAAATTCAGACAGCAAAAAGGATCGCTTGAAGAGAGACAGAGAGAGCAGGAAGCAGGGAGTATGCCTTTGCCCACATCCAGAAGAAATGCTTATGCCAATACATTGCTGACTAAGGTGAGTGCATAACATTTGTGTCTCAATTAAGAAGCAAAATATATTATGAACAAGGGCTAATTGATCATGAGACTTTATTTCCAATACTATGATGTACAGCCAAGGTAGTTTATCAAATATTTGAAATAGATTTTCTTAAAGGAAACTGTGTACTTTTCTTCTCTGAACTACTACAGAAATAGCTAGAATAAAAATACAAACTACCATAAG

Coding sequence (CDS)

ATGGCTATGGATACTCTATACGATTACCACATATGGCAACCTGAAGAAGGTGAAGATGATCTTAATGTTACCATCTCCAATTCTCACTTGCTTCCTTGTAACTGTTTCCTTTTCCACCTTCACTTCCGCCACATTCTTCAGTCAAATCACTCTCAACAATTTCACTATCTCCTAAATTCCTCTCTATCTTCTTTCTTGATACCTTGCGATGTCTTTTTCGCTACTGCCTCCAGTATCCTCATCGCTGTTTTCTCTGGCACCGGTGTCGCACAAGACTTCTTGGACACGGCTCTGCCTGACGTTCTCTCTGTCGCCGCTGATATCGCATGCAATCCTCTTAATGCTGGCCGTACCATACTTCCGTTGGCGGTGTCCGTTTTAGTTGTTTCGCCCTACAATGAACGCCAGGAAATTGGGCGAGTCTTACGGGAATCATCCCCGCAAGCGTTTAAGACGTTGCCAGCTAGTGAGATGGCAATCGAAGGTTTGAAGAACGTGGAGATTGATGTTGGTGGAGAGTTGTTGATTGGAGAATGTAGGATATGTTTGGATGAACTCATGAATGGAATGGAAGTTACGCGATTGCCGTGCGCTCATCTTTATCATAGAGACTGTATTGTTAAATGGCTGGAGACGAGTCATTTGTGCCCCTTGTGCCGGTACGCAATGCCGCTGAGCTGA

Protein sequence

MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNSSLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAGRTILPLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS

Homology

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BLAST of CsGy6G019820.1 vs. NCBI nr
Match: XP_004150446.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >KGN47723.1 hypothetical protein Csa_6G385070 [Cucumis sativus])

HSP 1 Score: 457.6 bits (1176), Expect = 2.4e-125
Identity = 224/226 (99.12%), Postives = 225/226 (99.56%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTA+PDVLSVAADIACNPLNAGRTIL
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECR 180
           PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsGy6G019820.1 vs. NCBI nr
Match: XP_008466716.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 445.3 bits (1144), Expect = 1.3e-121
Identity = 217/226 (96.02%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQ HYLLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAGRTIL 120
           SLSS+LIPCDVFFATASSILIAVFSGTGVAQDFLDTA+PDVLSVAADIACNPLNAGRTIL
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECR 180
           PL VSVLVVSPYNERQEIG+VLRESSPQAFKTLPASEMAIE LKNVEI VGGELLIGECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+TRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

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BLAST of CsGy6G019820.1 vs. NCBI nr
Match: XP_022990569.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima] >XP_022990570.1 probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima])

HSP 1 Score: 414.5 bits (1064), Expect = 2.4e-112
Identity = 202/226 (89.38%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD A+PDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQAFKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsGy6G019820.1 vs. NCBI nr
Match: XP_023554199.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413.3 bits (1061), Expect = 5.3e-112
Identity = 201/226 (88.94%), Postives = 209/226 (92.48%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDINVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD A+PDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQAFKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsGy6G019820.1 vs. NCBI nr
Match: XP_022963379.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita moschata] >XP_022963389.1 probable E3 ubiquitin-protein ligase ATL45 [Cucurbita moschata])

HSP 1 Score: 411.0 bits (1055), Expect = 2.6e-111
Identity = 200/226 (88.50%), Postives = 208/226 (92.04%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD A+PDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQ FKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsGy6G019820.1 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 33/92 (35.87%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 136 QEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELL---IGECRICLDELMNGMEV 195
           +++ + L E+ P  + T PAS+ AI+ L  V+  V  ++L   + +C +C+DE  +G +V
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVK--VTKDMLKSEMNQCAVCMDEFEDGSDV 231

Query: 196 TRLPCAHLYHRDCIVKWLETSHLCPLCRYAMP 225
            ++PC H++H+DC++ WLE  + CP+CR+ +P
Sbjct: 232 KQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]

BLAST of CsGy6G019820.1 vs. TAIR10
Match: AT1G55530.1 (RING/U-box superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 142 LRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLY 201
           L E+ P  + T PA + A+E L  V+I+   E L  +C +CLD+   G E   +PC H +
Sbjct: 191 LAENDPNRYGTPPAKKEAVEALATVKIE---ETL--QCSVCLDDFEIGTEAKLMPCTHKF 250

Query: 202 HRDCIVKWLETSHLCPLCRYAMP 225
           H DC++ WLE    CP+CRY +P
Sbjct: 251 HSDCLLPWLELHSSCPVCRYQLP 268

[Close]

BLAST of CsGy6G019820.1 vs. TAIR10
Match: AT3G13430.1 (RING/U-box superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-13
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 150 FKTLPASEMAIEGLKNVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIVKW 209
           + T PA++ A+E L  V+I+    LL  +C +CLD+   GME   +PC H +H DC++ W
Sbjct: 200 YGTPPATKEAVEALAMVKIE--DSLL--QCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPW 259

Query: 210 LETSHLCPLCRYAMP 225
           LE    CP+CRY +P
Sbjct: 260 LELHSSCPVCRYLLP 270

[Close]

BLAST of CsGy6G019820.1 vs. TAIR10
Match: AT1G60360.1 (RING/U-box superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-13
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 154 PASEMAIEGLKNVEIDVGGELL-IGECRICLDELMNGMEVTRLPCAHLYHRDCIVKWLET 213
           PASE  I  L +V+I        + +C +C++E + G + T LPC H+YH+DCIV WL  
Sbjct: 198 PASEPTINSLPSVKITPQHLTNDMSQCTVCMEEFIVGGDATELPCKHIYHKDCIVPWLRL 257

Query: 214 SHLCPLCRYAMPL 226
           ++ CP+CR  +PL
Sbjct: 258 NNSCPICRRDLPL 270

[Close]

BLAST of CsGy6G019820.1 vs. TAIR10
Match: AT2G29840.1 (RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 154 PASEMAIEGLKNVEIDVGGELLIGE---CRICLDELMNGMEVTRLPCAHLYHRDCIVKWL 213
           PAS++A+E L         + ++GE   C ICL+E  +G  +  LPC H +  +C +KW 
Sbjct: 217 PASKLAVESLNRKTYKKASD-VVGENEMCSICLEEFDDGRSIVALPCGHEFDDECALKWF 276

Query: 214 ETSHLCPLCRYAMP 225
           ET+H CPLCR+ +P
Sbjct: 277 ETNHDCPLCRFKLP 289

[Close]

BLAST of CsGy6G019820.1 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.0e-15
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 93  FLDTALPDVLSVAADIAC----NPLNAGRTILPLAVSVLVVSPYNERQEIGRVLRESSPQ 152
           F+   L D+ S  A I      NP + G   LP  +    + P  E  ++ + L E+ P 
Sbjct: 136 FIQNHLNDLRSSGAQIEFVIQNNPSDQGFR-LPANIGDYFIGPGLE--QLIQQLAENDPN 195

Query: 153 AFKTLPASEMAIEGLKNVEIDVGG-ELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIV 212
            + T PAS+ AIE L  V I          +C +C+D+   G E  ++PC HLYH+DC++
Sbjct: 196 RYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLL 255

Query: 213 KWLETSHLCPLCRYAMP 225
            WLE  + CP+CR+ +P
Sbjct: 256 PWLELHNSCPVCRHELP 269

[Close]

BLAST of CsGy6G019820.1 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-14
Identity = 33/92 (35.87%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 136 QEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELL---IGECRICLDELMNGMEV 195
           +++ + L E+ P  + T PAS+ AI+ L  V+  V  ++L   + +C +C+DE  +G +V
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVK--VTKDMLKSEMNQCAVCMDEFEDGSDV 231

Query: 196 TRLPCAHLYHRDCIVKWLETSHLCPLCRYAMP 225
            ++PC H++H+DC++ WLE  + CP+CR+ +P
Sbjct: 232 KQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]

BLAST of CsGy6G019820.1 vs. Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.5e-12
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 142 LRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLY 201
           L ES P    T PA + A+E L  V+I+      +  C +CLD+L  G +  ++PC H +
Sbjct: 167 LAESDPSRNGTPPAKKEAVEALPTVKIEE-----VVSCSVCLDDLEVGSQAKQMPCEHKF 226

Query: 202 HRDCIVKWLETSHLCPLCRYAMP 225
           H  CI+ WLE    CP+CR+ +P
Sbjct: 227 HSSCILPWLELHSSCPVCRFELP 244

[Close]

BLAST of CsGy6G019820.1 vs. Swiss-Prot
Match: sp|Q9SNB6|RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 154 PASEMAIEGLKNVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIVKWLETS 213
           PAS+ AIE L  VEI          C +C +    G+E   +PC H++H DCIV WL   
Sbjct: 190 PASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIR 249

Query: 214 HLCPLCRYAMP 225
           + CP+CR+ +P
Sbjct: 250 NSCPVCRFELP 260

[Close]

BLAST of CsGy6G019820.1 vs. Swiss-Prot
Match: sp|Q9LQX2|MPSR1_ARATH (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECR 180
           P    ++V+   +    + R L ES  +     PAS+ +I+ +  VEID G E   GEC 
Sbjct: 61  PFTQGMIVLEGSSGMNPLLRSLLESREEG--RPPASKASIDAMPIVEID-GCE---GECV 120

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPL 226
           ICL+E  +   V  +PC H +H  CI KWL     CP+CRY MP+
Sbjct: 121 ICLEEWKSEETVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEMPV 159

[Close]

BLAST of CsGy6G019820.1 vs. TrEMBL
Match: tr|A0A0A0KDU3|A0A0A0KDU3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G385070 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 1.6e-125
Identity = 224/226 (99.12%), Postives = 225/226 (99.56%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTA+PDVLSVAADIACNPLNAGRTIL
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECR 180
           PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsGy6G019820.1 vs. TrEMBL
Match: tr|A0A1S3CS28|A0A1S3CS28_CUCME (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103504063 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 8.3e-122
Identity = 217/226 (96.02%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQ HYLLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAGRTIL 120
           SLSS+LIPCDVFFATASSILIAVFSGTGVAQDFLDTA+PDVLSVAADIACNPLNAGRTIL
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECR 180
           PL VSVLVVSPYNERQEIG+VLRESSPQAFKTLPASEMAIE LKNVEI VGGELLIGECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+TRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsGy6G019820.1 vs. TrEMBL
Match: tr|M5XI10|M5XI10_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G495200 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.0e-46
Identity = 100/222 (45.05%), Postives = 141/222 (63.51%), Query Frame = 0


Query: 3   MDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNSSL 62
           M+T+Y Y I Q E+     N  +  +HLL C+CF+F L F H L+    Q  +  LNS  
Sbjct: 1   METIYQYSISQVEQ----QNQVLPTTHLLACDCFIFRLDFTHQLKLCFPQDLNIPLNSIQ 60

Query: 63  SSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAGRTILPL 122
            SF +P DVFF+     +  V SG+GV+ DF+   LP+V S A D+A  P NAG  I+PL
Sbjct: 61  ESFFVPFDVFFSHTQETIQTVLSGSGVSMDFVHVLLPEVHSFAMDVAQEPANAGPRIVPL 120

Query: 123 AVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGECRIC 182
            ++VL V+P+++R +I R + ES  Q F  +PA++ +I GLK V+ID     +  EC IC
Sbjct: 121 VLAVLAVTPFDDRDQIERAIMESG-QVFNPVPAAKSSIAGLKKVKID--NLSVTKECSIC 180

Query: 183 LDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMP 225
           L+E   G+EV  +PC+HLYH+DCIV+WL+ SHLCP CR+ +P
Sbjct: 181 LEEFSAGLEVVLMPCSHLYHKDCIVEWLKRSHLCPYCRFKLP 215

[Close]

BLAST of CsGy6G019820.1 vs. TrEMBL
Match: tr|A0A2P6PX93|A0A2P6PX93_ROSCH (Putative aminoacyltransferase, E1 ubiquitin-activating enzyme OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0295911 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.1e-44
Identity = 96/225 (42.67%), Postives = 137/225 (60.89%), Query Frame = 0


Query: 3   MDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNSSL 62
           M+TLY Y I Q E+     N    N+ LL C+CF+F+LHF H LQ  + Q     LNS  
Sbjct: 1   METLYQYSICQEEQ-----NHAFPNTQLLSCDCFIFNLHFTHQLQLYYPQDLFIPLNSIQ 60

Query: 63  SSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAG---RTI 122
            SF +PC+VFF      +  + SGTGV+ DF+   +P V S A +IA    N        
Sbjct: 61  ESFFVPCNVFFTHTHDTINTILSGTGVSLDFIQALVPQVYSFALEIATEFENGDPDEPKA 120

Query: 123 LPLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGEC 182
           +PL + V+ V+PY++  +I R + ES  Q F  +PA+  +I  LK V+++     ++ EC
Sbjct: 121 VPLNLGVVAVTPYDDHDQIERAIWESG-QVFNPVPATRSSIAALKKVKVE--NLSVVNEC 180

Query: 183 RICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMP 225
            ICL+E   G+EV R+PC+H+YH+DCIV+WL+ SHLCPLCR++MP
Sbjct: 181 SICLEEFSTGLEVIRMPCSHVYHKDCIVEWLKRSHLCPLCRFSMP 217

[Close]

BLAST of CsGy6G019820.1 vs. TrEMBL
Match: tr|B9RJ35|B9RJ35_RICCO (Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1030640 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.3e-37
Identity = 87/226 (38.50%), Postives = 137/226 (60.62%), Query Frame = 0


Query: 3   MDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNSSL 62
           M + Y+Y++WQ      D N   SN   + C+ F   +HF H+L+ ++ +     + ++ 
Sbjct: 1   MASTYEYYMWQ------DFNNKDSNDIDVDCDIFDIQIHFHHVLEIHYPESNQIPVTTTH 60

Query: 63  SSFLIPCDVFFA----TASSILIAVFSGTGVAQDFLDTALPDVLSVAADIACNPLNAGRT 122
            SF IP ++ F+    + SSI+ A+ S T  ++DF+D  LP+V S A ++A +P N    
Sbjct: 61  RSFPIPRNLIFSSDDQSRSSIMDAILSTTAASRDFIDLILPEVSSFALEMATHPSNKNVK 120

Query: 123 ILPLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKNVEIDVGGELLIGE 182
           +L + + + VV+PY+ER+EI R L E+  +  +  PAS+  IEGLK V ID   + + GE
Sbjct: 121 VLTMGLLICVVTPYDEREEIDRALGETIQEKARFKPASKSCIEGLKRVRIDKDDDKISGE 180

Query: 183 -CRICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAM 224
            C +CL++   G  V RL C H++H DCIVKWL T+HLCPLCR+++
Sbjct: 181 TCMVCLEKESVGEVVIRLACGHVFHEDCIVKWLHTNHLCPLCRFSI 220

The following BLAST results are available for this feature:

BLAST of CsGy6G019820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150446.1	2.4e-125	99.12	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >KGN47723.1 ...	[more]
XP_008466716.1	1.3e-121	96.02	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]
XP_022990569.1	2.4e-112	89.38	probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima] >XP_022990570.1 pr...	[more]
XP_023554199.1	5.3e-112	88.94	probable E3 ubiquitin-protein ligase ATL45 [Cucurbita pepo subsp. pepo]	[more]
XP_022963379.1	2.6e-111	88.50	probable E3 ubiquitin-protein ligase ATL45 [Cucurbita moschata] >XP_022963389.1 ...	[more]

BLAST of CsGy6G019820.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19950.1	1.9e-15	35.87	RING/U-box superfamily protein	[more]
AT1G55530.1	2.8e-14	40.96	RING/U-box superfamily protein	[more]
AT3G13430.1	3.1e-13	42.67	RING/U-box superfamily protein	[more]
AT1G60360.1	6.9e-13	42.47	RING/U-box superfamily protein	[more]
AT2G29840.1	2.6e-12	40.54	RING/U-box superfamily protein	[more]

BLAST of CsGy6G019820.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0CH30\|RING1_GOSHI	7.0e-15	34.31	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
sp\|Q8LPN7\|RNG1L_ARATH	3.5e-14	35.87	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|Q6AVN2\|SIRP1_ORYSJ	5.5e-12	38.55	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
sp\|Q9SNB6\|RDUF1_ARATH	1.0e-10	40.85	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
sp\|Q9LQX2\|MPSR1_ARATH	1.8e-10	38.10	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ...	[more]

BLAST of CsGy6G019820.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KDU3\|A0A0A0KDU3_CUCSA	1.6e-125	99.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G385070 PE=4 SV=1	[more]
tr\|A0A1S3CS28\|A0A1S3CS28_CUCME	8.3e-122	96.02	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103504063 P...	[more]
tr\|M5XI10\|M5XI10_PRUPE	2.0e-46	45.05	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G495200 PE=4 SV=1	[more]
tr\|A0A2P6PX93\|A0A2P6PX93_ROSCH	9.1e-44	42.67	Putative aminoacyltransferase, E1 ubiquitin-activating enzyme OS=Rosa chinensis ...	[more]
tr\|B9RJ35\|B9RJ35_RICCO	6.3e-37	38.50	Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1030640 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING
IPR011016	Znf_RING-CH

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G019820	CsGy6G019820	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G019820.1	CsGy6G019820.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G019820.1.five_prime_UTR.1	CsGy6G019820.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G019820.1.exon.1	CsGy6G019820.1.exon.1	exon
CsGy6G019820.1.exon.2	CsGy6G019820.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G019820.1.CDS.1	CsGy6G019820.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G019820.1.three_prime_UTR.1	CsGy6G019820.1.three_prime_UTR.1	three_prime_UTR
CsGy6G019820.1.three_prime_UTR.2	CsGy6G019820.1.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 178..220 e-value: 0.0022 score: 12.9
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 179..219 e-value: 5.5E-7 score: 39.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 178..220 e-value: 2.2E-13 score: 50.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 179..220 score: 12.932
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 142..225 e-value: 7.3E-19 score: 69.2
None	No IPR available	PANTHER	PTHR45491	FAMILY NOT NAMED	coord: 136..225
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 178..220 e-value: 2.74204E-15 score: 66.1713
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 178..224