CsGy6G008830.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy6G008830.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionAlanine--tRNA ligase
LocationChr6 : 7336660 .. 7342601 (+)
Sequence length1362
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGTTTGATTAAAATTGGGTTGATATTTAGTTTTGGTATAAAACTAGTTTTTTTCCTCAAAAAAGAGAAAAAGAAAAGGGCTCATCAAGGGGTCAAGAGCCAGCGGGCGCATCGACCAAAACCCAGGGGCGGGGCTTAGTGAAACCAAGTTTTTGAGAATTTTGCAATGGCGATGGATGCTGGATCATCGTCCTCCCAAGAAAACCAATCATCTCCTTCCTATCACCATCAATCTTCTTCATCAAAACCTCAATCATTGGAAGACTTAGCTAAGCCTTGGGCTGAATACGCTGCTCAACAGGCGCTGCTATACCAACGGGCTATCGACCACTCTTTGGAGTCTGCCATTGAAGTCTCCAAATCTCGCCTTTCTCAGATTCGTTCCACCTCTTTTCCTCATTTTCAGAAGGCAGTTGTAATTTCTCCATCTCTTATTATTACTTTTGTTTTTTTTTTCTCTCCCGTTGTTCTTTGTTTAGTTTTCAATTAAGGATGGATGTTAGTTTAGGTCTCCAAGAAAAGGGGTTGAAAGGTTTTGAATCGTTACTCAAGGTATTGGACTGTAGTCTATTCGTAGATGATTTGGTTGACCGATGCTTGTATATCTAATAGTTAAAATAGCTCCAATGGTGGCCGTTGGCAAGGGTTGGAGTCTCTCCTCATACCGATTTTGAGGTTAAAAAATTCGAATCTTTAAGTGAGTTTAATGCCAAAAACTCTGTAATGTCTCCTGGGGACTAGGGGAGTAAAGCTGAATAATCGAACTCGAGACCTAGCCTGTTGAACGAATATTTTATGGCTCTCTTTAAAGTTTTTTTTACCACAATTGTTGGCTTTGGACATAAATGAAGATTGCATCTAATGACTAGCTCGGCTGCTTGAGTTATGTTTGAAATGTGCTGGAATTTAGTGAGCCAACGTATGTCCCCATGCATTTCTTAAGTCCAATTGATGTTTTTGGCAAATTGAAGAGTTAGTTCATAATTTTTTCTTTCAAGGATTGCATATGAAAATGTTTTTCTTGCCTCTTGAGGGTTGTATATTTTTACACCAAAATAGAGCATTGAAAATGGATGATTCAAGAACATTCCCAGTGGATGTTTCTTTTCCTTTAAAAATTCTAGAATTTCTCTCTTCTCATATCTTCTAAAGAATGGCTCTGATCGTGCTAGCCCGTAAATGCCCTTTTGATGCCTTAAAAGGGTGATCAGTGAACAACATTATGATTTACGCAATTGTGTCCAATGGACCAGCAATATGCCAACCAACAGTCTAGATTTCAGCTTATCCTTTTTGTAAAGTCAGCATCAGGAAGGAGAAATTTGATGCAAAGGGCATTTTTTTTTTTCACAACCTATCCAGCGAATTGAGGCAGGAGTGGACAATTCCCATAGTAGAAACTTGACTCTCTTTGGACTAGGAAACTTTCACAATTGTTTGAAGAGACCAAAGTTATTCCTGGTATGGTGTGATATTAAGGATTTGACAGTAAAAAATCCACTGTTATCCAAATTCCAGATCTAAATGTCCTCCCTCAGTGTGAGGAAGAATGAGAATGGGGATGAGTTGATGGATGGAGACCTTTTCGGAAATTTCATCCTCAAGGTTGCTTCTAAAGTTCAGCACCATAGACGAGTCAATCAAATATTTTTGGAATTTCAGATGCCAGTTATATGCTTGTTTTTTCTTGGCTTGATGGCATTTACATGTCCTAATCATTTACATCTCTTGTTTCCCACAATAAATAGTTGTGATTTATATTATTTTATTTTGTTTTCTTGCTAAACTAAATGATTCATACTTTTTATAATGAAAATCTCATTTGATAGCACCTTGTTCATTCTCTGTTTGCCTACTTTTGGCTTCTCTGTTTTTTTTTCTTATTTTATTGAACATTATGCTCTAGACTTATCATTTTATGCATTGAAAACATGCCTCTAGGATTCCTTTTGGGAGGCGAAGTCCGAACTTGCTGCTTATGAGAATTTAGTATTTGGAAAAATTAGAGGTTAGTTCCTCATATATCATTGTGATGGAAAATTGATTTTACCTTCCTTCGTTTTTTTCTTTTATTTTTTGTACTCGAATTTTTAAATAACTGAAAACTGTTTTGAATTTTTTCTGCAGATGGTATTCTTGTTGCTGCATCACATCCACTGATCAGTTGTGGAGTTGCAACTGGAATGGGTTTCTTAGTCTTTAAAAGTATGATATCATTTATTGATGGGTTTTAATTTGATGATAAGATTTTTTAATGCATAGTTATAAATTAATAGATTCGTTTACTTGAAATACACTTATGTCTAATAATTTTTCTATATTTCATATCTTCCAATATTAATTGCTTTCTTATGATACCAAATCATTCAAGTATGTCCGAAATGAGTCTGGATTTTTATGTGATTAAATCTTCGAAAAGCTCTCACATTATTCCACTACAATAAATTCACAGTTCACCTAGATTTTGAGGCTGCTTTTGTAGTGAGTACATGGAAATTGTAACATTCTGAATCTTGAATATTTACTTTTCAACAGTGTTTTAATGTTCTGTGTAATCCTGCAGAGCCCAGAAATTTCTTATACTACAAAACCATTCGACTTTTCGTGAATGAAGAGGTGAGCAAATTTTAATCTATCTGTTATGTGATATTACCTTCTTTCTGTAAGCTTAGACTTTTGGGTTGATTGGTATTTTAAGGGGATGTCCAAGAGCTTCTATGTTCAAACGTCTATAGTGTTATTTCACCTCCAATTATTATTGATTTTTACATGTTGGATCTTCTACATTTTTCAAGCCCACAGGAGGGAGATTGTTCAATGGTATAATATTAGATTTACTTTTACCCATAAACTTAAACTTTTGGGTCAGGCGGTGATTTAAGACTTCCATAACTACAAAAGAGAAAAAAGCCAAAAAAGAAAAAAAGTATAAGTGGAACTCCAACTTTGACGAATTAATTAATTAATTTTTTCTGTTATTCCAACTTTTACAAATTTTATCATGGAAAATCATATCTATATATTGGTTTTGCAGTCCTTACTTTCCAAAGCTGATGCTAAAGTAAAAGAGTTGCGGCAGTCAATTGATCGGATAAAGGTTGAAAGTGAGAGGCTGGAGGTAGGATTATATATTTCTCTTAAGTCCTCAATTCATTATCGCTGATTGAAATATTAGTAAAATTGTCACATGAATACCTTTGATTATATATTTCTCCTTTCTGTATTAGAGATGTTGAGGTTAGGTAAGGGAGAAAGGAAATTCGTTATTGGAATCTTATTCCTTCCAAGGGATTTTCTTCTACATCTCTTTTGCAGTACGTACTAGATCCTTCTTCATTTAGAGAGTTTGTTTTCTCTGTTCTTTGGGAGGTGAACATCCCAACGAAGATGAAGTCTTCTTTGGGATTGTTTTGATGTTTGGTCCTTGGAAATATCTTCTTGTTGGGGCAACCATTTGCACCCTGTTTGCTCTGGCTTTTCACTTTTGATACCTATCTGACAGTAGGGATCTTTAACCGAGGTAAGTTGACTTTGCTCACATGTCAATGACATATACCTAAGCAAGGACGTGGTAACATGATTGGACTAACCGTATAAAAGAAGCTCACAATGGAATGACTATCATTATGGATTGTAGGGTTCAACCAAAAACCATCCAGAAAGGAATTATATTTCTCTTTTGTACTACTTGCAGCTCGAATTCGTCAGTTTTCCATGTTTTGAAACGTTTGTACTCTAAGAATGAAAAATTATTTTCTTTTCTATAATTTTCATTTCAGAAAAGAACACTTCAAGCTGAAGATGAATTGATACGAGGAAGAACAAAACTCAGGTTTGCTCAATATTTGTTGCTAATAGGCTGTTAGATATAATACCCTTATTGGTACCCCTTCTCATTTCTTTTTCTCTTGCAGGCAAGCAGGAAAACAAATTGAAGGTGTGATTCAGTCGGCTCATAAAATTGAAAGAAAGGCAAGAGGTATACAAATGAATTCTCTAGCCATGTTAAAATTGAAGAATGGTTAGAAAAATGCATGAAAATTTTGCTACATCTCAGCTCACGCTATTTTTTGTGTGCCATGACATCAGGTTTAAAAGATATTCTTGCAGATCTTCCCACTAGGGAAGCTTCACGATTTAGGACACAGGTGAGTGTTCCATTTGACTCTGCACTTTTTTGTTAGTGTTGCATCCTCGTTGAGTGAGCTTTCTGAATTCTCTCTTCCAAAGTATTGATTGAATAGTTTGGTCAGAATTTGGTTAGAAGAAACTTCAAAGTAGCAGCCTACCAACTTTAGTTTTTTCCTCGCAGTTCTATATTTTTTATAGTCATCAATCCCCCATCCTGTTTTGGTAATTCTCATTTGTGATGTATTGAAAACCCAGCGTGTGAGTGTGCACTAGATGAAATAAGCTCATTTTTTACTCCACATGAATCAATTGTAATATAAAACTTTTATTTCATCAATTTTAAACCTTATACTAGGATATGCAACCCTTTCCTCTCTCCTAGTCTCCCTTAAACCCTAAACCTCACCGTTATCCGTTGTCATCGTCCCTCTGCTGTTAGTCGATTTCTTGCGCTGCTGTTCGGTGACCAGCATGTTCTCTTTCAATTTTTCTTCTCTCGCCTTGCTTGACAGATCTTGGGCCCCTTCTCCTCCTAATCTTCTCCTCACCCTAAAATGCTAACCCTCCCTGCCCGCCGTCCCTTTCTGCTGACATTGCTAGTTGTTACCCTTTCACTGTTCACTTGTCTTTCATCAATCGTTTCTGTCGCTGTTTGCCGGTCGATTTTCCCCTTCCCCTTTTCTCATCTCCTCACCTTGTGCAGCTCTTGTGGAAGTTCTATTCTGTATTTTGTTCTTTTTGGGTTTTCTTGTAGCTGTTTCTTTTTTGTTTTTTAATTTTTACCACCTTGTGGAGTTTGTATCTTTGAGTTCCAATCTCTTTTTCATTTATTCAATGAAAGTTTTGTTTTTTTTGTTTTTATTTGTATAAATATTTTTATGTTTATGTTTTTAATTTTTTTAATCTTATCCTCGAGTTTGTAATGCATTTCACATCCTCAGTTCAGTTGGATGTGAATCATGTGACGCACGGACAGCCTCTCTTAATTGTGTTATTCTGTTGCTAGAATTGAGGATTAGGCTCTAAGTATTTTCATGATTGGGGCTGGGCATTTATTTGACATGATATTGGTTGCTTTGTCAATTAAATTTTCTATGCTTTAGTGCTTGGTTCACGAGTGATATTAATTCAGAGACTTGTTCTAGTTCAAGGTTTAAATCCATGAAATTGAAAGGTTAAAATTGTTAAAAACAATTGGTATAAATCAAACATTTCCCTATATATTTCCATATACACTAATCTTGGAATCTGCATTTGCAGGTCTCTAACCTTGCTTCTGAGGCAAAGAAGGAAAGAATTGGGTTAAGCAAGGAGGTCTCAAAAATAAGCAACTATGGCATCTCTGTCTGATAAATTCAAATCAAACATTTGACTCAGCCTCAACAATATTACTCCATCCCAGAATTCACTTGATATGGTCTGAAACCACTACCTGCATATCCTTTCTCATCAGTTGGTAGAAGGATGAGTTCTTTTTCTTGTTTTTAAAGTGCTCGACCAAAATAAGTTTTTAAGTTTTTCTGTTGAGTTACACCACTGAAAGGTGAATCTGATTGTTCAGTACAATAATTGTAGATGCAATATCAATAGAGTTGGTCCTTTCGATAGAATGGTAATTCCTTCTAACAAAGTGTACTTGTTACAAGAATTGTGAGTTCAGCGAGCAGTGCTCATTCTGCATTTACTTAATACTACTTATAGACCAAATGGTAATCGTGTTTGTTGAAAATGTCGTTACTGTGAGATGAGTATCTTGGAATACAAAATGGATACTCATTAATATTCAGATTGGCACCAGCTAAAACAACC

mRNA sequence

GTTTGTTTGATTAAAATTGGGTTGATATTTAGTTTTGGTATAAAACTAGTTTTTTTCCTCAAAAAAGAGAAAAAGAAAAGGGCTCATCAAGGGGTCAAGAGCCAGCGGGCGCATCGACCAAAACCCAGGGGCGGGGCTTAGTGAAACCAAGTTTTTGAGAATTTTGCAATGGCGATGGATGCTGGATCATCGTCCTCCCAAGAAAACCAATCATCTCCTTCCTATCACCATCAATCTTCTTCATCAAAACCTCAATCATTGGAAGACTTAGCTAAGCCTTGGGCTGAATACGCTGCTCAACAGGCGCTGCTATACCAACGGGCTATCGACCACTCTTTGGAGTCTGCCATTGAAGTCTCCAAATCTCGCCTTTCTCAGATTCGTTCCACCTCTTTTCCTCATTTTCAGAAGGCAGTTGATTCCTTTTGGGAGGCGAAGTCCGAACTTGCTGCTTATGAGAATTTAGTATTTGGAAAAATTAGAGATGGTATTCTTGTTGCTGCATCACATCCACTGATCAGTTGTGGAGTTGCAACTGGAATGGGTTTCTTATCCTTACTTTCCAAAGCTGATGCTAAAGTAAAAGAGTTGCGGCAGTCAATTGATCGGATAAAGGTTGAAAGTGAGAGGCTGGAGAAAAGAACACTTCAAGCTGAAGATGAATTGATACGAGGAAGAACAAAACTCAGGCAAGCAGGAAAACAAATTGAAGGTGTGATTCAGTCGGCTCATAAAATTGAAAGAAAGGCAAGAGGTTTAAAAGATATTCTTGCAGATCTTCCCACTAGGGAAGCTTCACGATTTAGGACACAGGTCTCTAACCTTGCTTCTGAGGCAAAGAAGGAAAGAATTGGGTTAAGCAAGGAGGTCTCAAAAATAAGCAACTATGGCATCTCTGTCTGATAAATTCAAATCAAACATTTGACTCAGCCTCAACAATATTACTCCATCCCAGAATTCACTTGATATGGTCTGAAACCACTACCTGCATATCCTTTCTCATCAGTTGGTAGAAGGATGAGTTCTTTTTCTTGTTTTTAAAGTGCTCGACCAAAATAAGTTTTTAAGTTTTTCTGTTGAGTTACACCACTGAAAGGTGAATCTGATTGTTCAGTACAATAATTGTAGATGCAATATCAATAGAGTTGGTCCTTTCGATAGAATGGTAATTCCTTCTAACAAAGTGTACTTGTTACAAGAATTGTGAGTTCAGCGAGCAGTGCTCATTCTGCATTTACTTAATACTACTTATAGACCAAATGGTAATCGTGTTTGTTGAAAATGTCGTTACTGTGAGATGAGTATCTTGGAATACAAAATGGATACTCATTAATATTCAGATTGGCACCAGCTAAAACAACC

Coding sequence (CDS)

ATGGCGATGGATGCTGGATCATCGTCCTCCCAAGAAAACCAATCATCTCCTTCCTATCACCATCAATCTTCTTCATCAAAACCTCAATCATTGGAAGACTTAGCTAAGCCTTGGGCTGAATACGCTGCTCAACAGGCGCTGCTATACCAACGGGCTATCGACCACTCTTTGGAGTCTGCCATTGAAGTCTCCAAATCTCGCCTTTCTCAGATTCGTTCCACCTCTTTTCCTCATTTTCAGAAGGCAGTTGATTCCTTTTGGGAGGCGAAGTCCGAACTTGCTGCTTATGAGAATTTAGTATTTGGAAAAATTAGAGATGGTATTCTTGTTGCTGCATCACATCCACTGATCAGTTGTGGAGTTGCAACTGGAATGGGTTTCTTATCCTTACTTTCCAAAGCTGATGCTAAAGTAAAAGAGTTGCGGCAGTCAATTGATCGGATAAAGGTTGAAAGTGAGAGGCTGGAGAAAAGAACACTTCAAGCTGAAGATGAATTGATACGAGGAAGAACAAAACTCAGGCAAGCAGGAAAACAAATTGAAGGTGTGATTCAGTCGGCTCATAAAATTGAAAGAAAGGCAAGAGGTTTAAAAGATATTCTTGCAGATCTTCCCACTAGGGAAGCTTCACGATTTAGGACACAGGTCTCTAACCTTGCTTCTGAGGCAAAGAAGGAAAGAATTGGGTTAAGCAAGGAGGTCTCAAAAATAAGCAACTATGGCATCTCTGTCTGA

Protein sequence

MAMDAGSSSSQENQSSPSYHHQSSSSKPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESAIEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCGVATGMGFLSLLSKADAKVKELRQSIDRIKVESERLEKRTLQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV
Homology
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BLAST of CsGy6G008830.1 vs. NCBI nr
Match: XP_011656867.1 (PREDICTED: uncharacterized protein LOC101214960 isoform X1 [Cucumis sativus])

HSP 1 Score: 397.9 bits (1021), Expect = 2.5e-107
Identity = 239/265 (90.19%), Postives = 239/265 (90.19%), Query Frame = 0 

Query: 1   MAMDAGSXXXXXXXXXXXXXXXXXXXXPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60
           MAMDAGS  XXXXXXXXXXXXXXX   PQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA
Sbjct: 1   MAMDAGSSSXXXXXXXXXXXXXXXSPKPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60

Query: 61  IEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG 120
           IEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG
Sbjct: 61  IEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG 120

Query: 121 VATGMGFL---------------------SLLSKADAKVKELRQSIDRIKVESERLEKRT 180
           VATGMGFL                     SLLSKADAKVKELRQSIDRIKVESERLEKRT
Sbjct: 121 VATGMGFLVFKKPRNFLYYKTIRLFVNEESLLSKADAKVKELRQSIDRIKVESERLEKRT 180

Query: 181 LQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240
           LQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL
Sbjct: 181 LQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240

Query: 241 ASEAKKERIGLSKEVSKISNYGISV 245
           ASEAKKERIGLSKEVSKISNYGISV
Sbjct: 241 ASEAKKERIGLSKEVSKISNYGISV 265

[Close]
BLAST of CsGy6G008830.1 vs. NCBI nr
Match: XP_008459726.1 (PREDICTED: uncharacterized protein LOC103498769 [Cucumis melo])

HSP 1 Score: 393.3 bits (1009), Expect = 6.1e-106
Identity = 240/265 (90.57%), Postives = 243/265 (91.70%), Query Frame = 0 

Query: 1   MAMDAGSXXXXXXXXXXXXXXXXXXXXPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60
           MAMDAGSXXXXXXXXXXXXXXXXXXXXPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA
Sbjct: 1   MAMDAGSXXXXXXXXXXXXXXXXXXXXPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60

Query: 61  IEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG 120
           IE SKSRLSQIRSTS+PHFQKA+DSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG
Sbjct: 61  IEASKSRLSQIRSTSYPHFQKAIDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG 120

Query: 121 VATGMGFL---------------------SLLSKADAKVKELRQSIDRIKVESERLEKRT 180
           VATGMGFL                     SLLSKADAKVKELRQSIDRIKVESERLEKRT
Sbjct: 121 VATGMGFLVFKKPRSFLYYKTVRLFMNEESLLSKADAKVKELRQSIDRIKVESERLEKRT 180

Query: 181 LQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240
           LQAE+ELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL
Sbjct: 181 LQAEEELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240

Query: 241 ASEAKKERIGLSKEVSKISNYGISV 245
           ASEAKKERIGLSKEVSKISNYGISV
Sbjct: 241 ASEAKKERIGLSKEVSKISNYGISV 265

[Close]
BLAST of CsGy6G008830.1 vs. NCBI nr
Match: XP_011656868.1 (PREDICTED: uncharacterized protein LOC101214960 isoform X2 [Cucumis sativus])

HSP 1 Score: 389.4 bits (999), Expect = 8.8e-105
Identity = 237/265 (89.43%), Postives = 237/265 (89.43%), Query Frame = 0 

Query: 1   MAMDAGSXXXXXXXXXXXXXXXXXXXXPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60
           MAMDAGS  XXXXXXXXXXXXXXX   PQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA
Sbjct: 1   MAMDAGSSSXXXXXXXXXXXXXXXSPKPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60

Query: 61  IEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG 120
           IEVSKSRLSQIRSTSFPHFQK  DSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG
Sbjct: 61  IEVSKSRLSQIRSTSFPHFQK--DSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG 120

Query: 121 VATGMGFL---------------------SLLSKADAKVKELRQSIDRIKVESERLEKRT 180
           VATGMGFL                     SLLSKADAKVKELRQSIDRIKVESERLEKRT
Sbjct: 121 VATGMGFLVFKKPRNFLYYKTIRLFVNEESLLSKADAKVKELRQSIDRIKVESERLEKRT 180

Query: 181 LQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240
           LQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL
Sbjct: 181 LQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240

Query: 241 ASEAKKERIGLSKEVSKISNYGISV 245
           ASEAKKERIGLSKEVSKISNYGISV
Sbjct: 241 ASEAKKERIGLSKEVSKISNYGISV 263

[Close]
BLAST of CsGy6G008830.1 vs. NCBI nr
Match: XP_022959270.1 (uncharacterized protein LOC111460300 [Cucurbita moschata])

HSP 1 Score: 359.8 bits (922), Expect = 7.5e-96
Identity = 201/265 (75.85%), Postives = 215/265 (81.13%), Query Frame = 0 

Query: 1   MAMDAGSXXXXXXXXXXXXXXXXXXXXPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60
           MAMDAGS                    PQ+LEDLAK WA YAAQQA+LYQ AI+HSLESA
Sbjct: 1   MAMDAGSSSSLENQSSLSNHHESSLGKPQALEDLAKSWAGYAAQQAMLYQLAINHSLESA 60

Query: 61  IEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG 120
           +E SKSRLSQIRSTS+PHFQKA+DSF + KSE+A +ENL FGK+RDGILVAASHPLISCG
Sbjct: 61  VEASKSRLSQIRSTSYPHFQKAIDSFQDVKSEVADFENLFFGKVRDGILVAASHPLISCG 120

Query: 121 VATGMGFL---------------------SLLSKADAKVKELRQSIDRIKVESERLEKRT 180
           VATGMG L                     +LLSKADA+VKELRQSIDRIKVESERLEKRT
Sbjct: 121 VATGMGLLVFKKPRNFLYYKTVRLFVNEEALLSKADARVKELRQSIDRIKVESERLEKRT 180

Query: 181 LQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240
           LQA++ELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL
Sbjct: 181 LQAQEELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240

Query: 241 ASEAKKERIGLSKEVSKISNYGISV 245
           ASEAKKERIGLSKEVSKISNYGISV
Sbjct: 241 ASEAKKERIGLSKEVSKISNYGISV 265

[Close]
BLAST of CsGy6G008830.1 vs. NCBI nr
Match: XP_023006638.1 (uncharacterized protein LOC111499304 [Cucurbita maxima])

HSP 1 Score: 359.0 bits (920), Expect = 1.3e-95
Identity = 200/265 (75.47%), Postives = 215/265 (81.13%), Query Frame = 0 

Query: 1   MAMDAGSXXXXXXXXXXXXXXXXXXXXPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60
           MAMDAGS                    PQ+LEDLAK W  YAAQQA+LYQ AI+HSLESA
Sbjct: 1   MAMDAGSSSSLENPSSLSNHHESSPGKPQALEDLAKSWVGYAAQQAMLYQLAINHSLESA 60

Query: 61  IEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG 120
           +E SKSRLSQIRSTS+PHFQKA+DSF + KSE+A +ENL+FGK+RDGILVAASHPLISCG
Sbjct: 61  VEASKSRLSQIRSTSYPHFQKAIDSFQDVKSEVADFENLLFGKVRDGILVAASHPLISCG 120

Query: 121 VATGMGFL---------------------SLLSKADAKVKELRQSIDRIKVESERLEKRT 180
           VATGMG L                     +LLSKADA+VKELRQSIDRIKVESERLEKRT
Sbjct: 121 VATGMGLLVFKKPRNFLYYKTVRLFVNEEALLSKADARVKELRQSIDRIKVESERLEKRT 180

Query: 181 LQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240
           LQA++ELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL
Sbjct: 181 LQAQEELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240

Query: 241 ASEAKKERIGLSKEVSKISNYGISV 245
           ASEAKKERIGLSKEVSKISNYGISV
Sbjct: 241 ASEAKKERIGLSKEVSKISNYGISV 265

[Close]
BLAST of CsGy6G008830.1 vs. TAIR10
Match: AT2G45060.1 (Uncharacterised conserved protein UCP022280)

HSP 1 Score: 228.0 bits (580), Expect = 6.2e-60
Identity = 129/231 (55.84%), Postives = 162/231 (70.13%), Query Frame = 0 

Query: 35  AKPWAEYAAQQALLYQRAIDHSLESAIEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELA 94
           A  W + A +QAL+YQ+ I  +++S I+ SK+RLSQIR TS  H  + +DS  +  SE  
Sbjct: 42  AASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRDIASEYN 101

Query: 95  AYENLVFGKIRDGILVAASHPLISCGVATGMGFL---------------------SLLSK 154
            YE +VFGKI+DG+ VAASHPLIS  +A G+G                       +LLS+
Sbjct: 102 VYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRFVYYNTVRMFVSEEALLSR 161

Query: 155 ADAKVKELRQSIDRIKVESERLEKRTLQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERK 214
           AD KVKELRQS+DR+K ESE+LE+    AE+E IRGR KLRQAGKQI G I SA+KIE++
Sbjct: 162 ADLKVKELRQSMDRLKAESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSAYKIEKQ 221

Query: 215 ARGLKDILADLPTREASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 245
           A GLKD+L +LPTREASRFRTQ+S  ASE K+ER  L+KEV+KISNYGISV
Sbjct: 222 AAGLKDVLKELPTREASRFRTQISKRASEVKQERNALTKEVNKISNYGISV 272

[Close]
BLAST of CsGy6G008830.1 vs. TAIR10
Match: AT4G26410.1 (Uncharacterised conserved protein UCP022280)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-19
Identity = 62/216 (28.70%), Postives = 108/216 (50.00%), Query Frame = 0 

Query: 50  QRAIDHSLESAIEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGIL 109
           QR +  S ++A+  ++S    +R  S   F+   D    A ++   YEN  F K+ D ++
Sbjct: 52  QRTVKESKDTAMRSARS----LRENSTSQFRSIQDFIPHALTQYKTYENAFFSKVTDELI 111

Query: 110 VAASHPLISCGVATGMGFLSL---------------------LSKADAKVKELRQSIDRI 169
            A  HP  + G+      + +                       KA+  V+EL  S+D +
Sbjct: 112 YAKEHPAAAIGIGVAASLVLMRGPRRFLFRNTLGRFQSEEAQFLKAEKHVQELNMSVDLM 171

Query: 170 KVESERLEKRTLQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTRE 229
           K ES +L +RT  AE ++ RG ++L  +G  I  + +S HK E +A  L D L  +P R+
Sbjct: 172 KKESRKLLERTALAEKDMKRGLSELMNSGNDIHRLAKSVHKAECEAADLMDGLRQIPGRD 231

Query: 230 ASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 245
           A + R +V+++ S  +++RI L+K +  +S+ G+SV
Sbjct: 232 AIKLRAEVASMTSLLRQKRIALNKRIMGMSDLGVSV 263

[Close]
BLAST of CsGy6G008830.1 vs. Swiss-Prot
Match: sp|Q84K90|RHIP1_ARATH (RGS1-HXK1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=RHIP1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.6e-18
Identity = 62/216 (28.70%), Postives = 108/216 (50.00%), Query Frame = 0 

Query: 50  QRAIDHSLESAIEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGIL 109
           QR +  S ++A+  ++S    +R  S   F+   D    A ++   YEN  F K+ D ++
Sbjct: 52  QRTVKESKDTAMRSARS----LRENSTSQFRSIQDFIPHALTQYKTYENAFFSKVTDELI 111

Query: 110 VAASHPLISCGVATGMGFLSL---------------------LSKADAKVKELRQSIDRI 169
            A  HP  + G+      + +                       KA+  V+EL  S+D +
Sbjct: 112 YAKEHPAAAIGIGVAASLVLMRGPRRFLFRNTLGRFQSEEAQFLKAEKHVQELNMSVDLM 171

Query: 170 KVESERLEKRTLQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTRE 229
           K ES +L +RT  AE ++ RG ++L  +G  I  + +S HK E +A  L D L  +P R+
Sbjct: 172 KKESRKLLERTALAEKDMKRGLSELMNSGNDIHRLAKSVHKAECEAADLMDGLRQIPGRD 231

Query: 230 ASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 245
           A + R +V+++ S  +++RI L+K +  +S+ G+SV
Sbjct: 232 AIKLRAEVASMTSLLRQKRIALNKRIMGMSDLGVSV 263

[Close]
BLAST of CsGy6G008830.1 vs. TrEMBL
Match: tr|A0A1S3CAD0|A0A1S3CAD0_CUCME (uncharacterized protein LOC103498769 OS=Cucumis melo OX=3656 GN=LOC103498769 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 4.1e-106
Identity = 240/265 (90.57%), Postives = 243/265 (91.70%), Query Frame = 0 

Query: 1   MAMDAGSXXXXXXXXXXXXXXXXXXXXPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60
           MAMDAGSXXXXXXXXXXXXXXXXXXXXPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA
Sbjct: 1   MAMDAGSXXXXXXXXXXXXXXXXXXXXPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESA 60

Query: 61  IEVSKSRLSQIRSTSFPHFQKAVDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG 120
           IE SKSRLSQIRSTS+PHFQKA+DSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG
Sbjct: 61  IEASKSRLSQIRSTSYPHFQKAIDSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCG 120

Query: 121 VATGMGFL---------------------SLLSKADAKVKELRQSIDRIKVESERLEKRT 180
           VATGMGFL                     SLLSKADAKVKELRQSIDRIKVESERLEKRT
Sbjct: 121 VATGMGFLVFKKPRSFLYYKTVRLFMNEESLLSKADAKVKELRQSIDRIKVESERLEKRT 180

Query: 181 LQAEDELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240
           LQAE+ELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL
Sbjct: 181 LQAEEELIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 240

Query: 241 ASEAKKERIGLSKEVSKISNYGISV 245
           ASEAKKERIGLSKEVSKISNYGISV
Sbjct: 241 ASEAKKERIGLSKEVSKISNYGISV 265

[Close]
BLAST of CsGy6G008830.1 vs. TrEMBL
Match: tr|A0A0A0KA31|A0A0A0KA31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108580 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 7.0e-74
Identity = 161/182 (88.46%), Postives = 161/182 (88.46%), Query Frame = 0 

Query: 84  DSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCGVATGMGFL--------------- 143
           DSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCGVATGMGFL               
Sbjct: 28  DSFWEAKSELAAYENLVFGKIRDGILVAASHPLISCGVATGMGFLVFKKPRNFLYYKTIR 87

Query: 144 ------SLLSKADAKVKELRQSIDRIKVESERLEKRTLQAEDELIRGRTKLRQAGKQIEG 203
                 SLLSKADAKVKELRQSIDRIKVESERLEKRTLQAEDELIRGRTKLRQAGKQIEG
Sbjct: 88  LFVNEESLLSKADAKVKELRQSIDRIKVESERLEKRTLQAEDELIRGRTKLRQAGKQIEG 147

Query: 204 VIQSAHKIERKARGLKDILADLPTREASRFRTQVSNLASEAKKERIGLSKEVSKISNYGI 245
           VIQSAHKIERKARGLKDILADLPTREASRFRTQVSNLASEAKKERIGLSKEVSKISNYGI
Sbjct: 148 VIQSAHKIERKARGLKDILADLPTREASRFRTQVSNLASEAKKERIGLSKEVSKISNYGI 207

[Close]
BLAST of CsGy6G008830.1 vs. TrEMBL
Match: tr|A0A2P5CJF3|A0A2P5CJF3_PARAD (Alanine-tRNA ligase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_147670 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 142/238 (59.66%), Postives = 178/238 (74.79%), Query Frame = 0 

Query: 28  PQSLEDLAKPWAEYAAQQALLYQRAIDHSLESAIEVSKSRLSQIRSTSFPHFQKAVDSFW 87
           PQ L     PW +YA QQA LYQ+ ++ + +SAIE SKSRLSQI STS  HF + +DS  
Sbjct: 23  PQFLGQTPTPWVDYAIQQARLYQKTLEETFDSAIEASKSRLSQILSTSSAHFHQTLDSLE 82

Query: 88  EAKSELAAYENLVFGKIRDGILVAASHPLISCGVATGMGFL------------------- 147
           + KSE  AYE+++FGKI++GI VAASHP+++ G ATG+GFL                   
Sbjct: 83  DIKSEYGAYEDIIFGKIKEGIFVAASHPVLAGGFATGLGFLVLKKPRQSLYHKTLCLFLS 142

Query: 148 --SLLSKADAKVKELRQSIDRIKVESERLEKRTLQAEDELIRGRTKLRQAGKQIEGVIQS 207
             +LLS+ADAKVK L+QS+D IK ESE+LEK   QAE+ELIRGRTKLRQAGKQI+G+I+S
Sbjct: 143 EETLLSRADAKVKALQQSLDVIKTESEKLEKGVKQAEEELIRGRTKLRQAGKQIQGLIRS 202

Query: 208 AHKIERKARGLKDILADLPTREASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 245
           A+KIER+ARGL+DIL +LP REAS+FR+QVS L  EAK+ER  L+KEV+KISNYGISV
Sbjct: 203 AYKIERQARGLRDILGELPRREASQFRSQVSGLTLEAKRERNALTKEVTKISNYGISV 260

[Close]
BLAST of CsGy6G008830.1 vs. TrEMBL
Match: tr|A0A2P4IYM2|A0A2P4IYM2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_26968 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.7e-65
Identity = 141/237 (59.49%), Postives = 181/237 (76.37%), Query Frame = 0 

Query: 29  QSLEDLAKPWAEYAAQQALLYQRAIDHSLESAIEVSKSRLSQIRSTSFPHFQKAVDSFWE 88
           ++L++    W EYA  QA LYQ+AI  +L+SA EVS+SRLSQI STS  HF + +DS  +
Sbjct: 40  KTLDETTMLWVEYAVHQAQLYQKAIKEALDSAFEVSRSRLSQIHSTSSAHFNQTIDSLQD 99

Query: 89  AKSELAAYENLVFGKIRDGILVAASHPLISCGVATGMG---------FL----------- 148
            KS+ A YE+L+ GKI++G+++A+SHPLI+ GVA G+G         FL           
Sbjct: 100 LKSDYATYEDLLVGKIKEGVVIASSHPLITGGVAAGLGLTVLKRPRRFLYYKTLRLFASE 159

Query: 149 -SLLSKADAKVKELRQSIDRIKVESERLEKRTLQAEDELIRGRTKLRQAGKQIEGVIQSA 208
            SLLS+AD++VKELRQSID +K ESE+LEKR L  E+EL+RGRTKLRQAGKQI+GVI+SA
Sbjct: 160 ESLLSRADSQVKELRQSIDLLKAESEKLEKRALHGEEELLRGRTKLRQAGKQIQGVIRSA 219

Query: 209 HKIERKARGLKDILADLPTREASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 245
           +KIER+A GLKDIL +LP  +ASRFR+QVS LASEAK+ER+ L+KEV+KISNYGISV
Sbjct: 220 YKIERQAGGLKDILGELPRTQASRFRSQVSKLASEAKRERVALTKEVTKISNYGISV 276

[Close]
BLAST of CsGy6G008830.1 vs. TrEMBL
Match: tr|A0A2P5C9Q4|A0A2P5C9Q4_9ROSA (Alanine-tRNA ligase OS=Trema orientalis OX=63057 GN=TorRG33x02_293130 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 142/238 (59.66%), Postives = 176/238 (73.95%), Query Frame = 0 

Query: 28  PQSLEDLAKPWAEYAAQQALLYQRAIDHSLESAIEVSKSRLSQIRSTSFPHFQKAVDSFW 87
           PQ       PW +YA QQA LYQ+ ++ + +SAIE SKSRLSQI STS  HF + +DS  
Sbjct: 31  PQFRGQTPTPWVDYAIQQARLYQKTLEETFDSAIEASKSRLSQILSTSSAHFHQTLDSLE 90

Query: 88  EAKSELAAYENLVFGKIRDGILVAASHPLISCGVATGMGFL------------------- 147
           + KSE  AYE+++FGKI++GI VAASHP+ + G AT +GFL                   
Sbjct: 91  DIKSEYGAYEDIIFGKIKEGIFVAASHPVSAGGFATALGFLVLKKPRRFLYHKTLRLFLS 150

Query: 148 --SLLSKADAKVKELRQSIDRIKVESERLEKRTLQAEDELIRGRTKLRQAGKQIEGVIQS 207
             +LLS+ADAKVKEL+QS+D IK ESE+LEK   QAE+ELIRGRTKLRQAGKQI+GVI+S
Sbjct: 151 EETLLSRADAKVKELQQSLDVIKAESEKLEKGAKQAEEELIRGRTKLRQAGKQIQGVIRS 210

Query: 208 AHKIERKARGLKDILADLPTREASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 245
           A+KIER+ARGLKDIL +LP REA++FR+QVS L  EAK+ER  L+KEV+KISNYGISV
Sbjct: 211 AYKIERQARGLKDILGELPRREATQFRSQVSGLTLEAKRERNALTKEVTKISNYGISV 268

The following BLAST results are available for this feature:
BLAST of CsGy6G008830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656867.12.5e-10790.19PREDICTED: uncharacterized protein LOC101214960 isoform X1 [Cucumis sativus][more]
XP_008459726.16.1e-10690.57PREDICTED: uncharacterized protein LOC103498769 [Cucumis melo][more]
XP_011656868.18.8e-10589.43PREDICTED: uncharacterized protein LOC101214960 isoform X2 [Cucumis sativus][more]
XP_022959270.17.5e-9675.85uncharacterized protein LOC111460300 [Cucurbita moschata][more]
XP_023006638.11.3e-9575.47uncharacterized protein LOC111499304 [Cucurbita maxima][more]
BLAST of CsGy6G008830.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45060.16.2e-6055.84Uncharacterised conserved protein UCP022280[more]
AT4G26410.13.1e-1928.70Uncharacterised conserved protein UCP022280[more]
BLAST of CsGy6G008830.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84K90|RHIP1_ARATH5.6e-1828.70RGS1-HXK1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=RHIP1 PE=1 SV... [more]
BLAST of CsGy6G008830.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CAD0|A0A1S3CAD0_CUCME4.1e-10690.57uncharacterized protein LOC103498769 OS=Cucumis melo OX=3656 GN=LOC103498769 PE=... [more]
tr|A0A0A0KA31|A0A0A0KA31_CUCSA7.0e-7488.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108580 PE=4 SV=1[more]
tr|A0A2P5CJF3|A0A2P5CJF3_PARAD2.7e-6559.66Alanine-tRNA ligase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_147670 PE=4 S... [more]
tr|A0A2P4IYM2|A0A2P4IYM2_QUESU7.7e-6559.49Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_26968 PE=4 SV=1[more]
tr|A0A2P5C9Q4|A0A2P5C9Q4_9ROSA1.7e-6459.66Alanine-tRNA ligase OS=Trema orientalis OX=63057 GN=TorRG33x02_293130 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy6G008830CsGy6G008830gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G008830.1.five_prime_UTR.1CsGy6G008830.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G008830.1.exon.1CsGy6G008830.1.exon.1exon
CsGy6G008830.1.exon.2CsGy6G008830.1.exon.2exon
CsGy6G008830.1.exon.3CsGy6G008830.1.exon.3exon
CsGy6G008830.1.exon.4CsGy6G008830.1.exon.4exon
CsGy6G008830.1.exon.5CsGy6G008830.1.exon.5exon
CsGy6G008830.1.exon.6CsGy6G008830.1.exon.6exon
CsGy6G008830.1.exon.7CsGy6G008830.1.exon.7exon
CsGy6G008830.1.exon.8CsGy6G008830.1.exon.8exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G008830.1.CDS.1CsGy6G008830.1.CDS.1CDS
CsGy6G008830.1.CDS.2CsGy6G008830.1.CDS.2CDS
CsGy6G008830.1.CDS.3CsGy6G008830.1.CDS.3CDS
CsGy6G008830.1.CDS.4CsGy6G008830.1.CDS.4CDS
CsGy6G008830.1.CDS.5CsGy6G008830.1.CDS.5CDS
CsGy6G008830.1.CDS.6CsGy6G008830.1.CDS.6CDS
CsGy6G008830.1.CDS.7CsGy6G008830.1.CDS.7CDS
CsGy6G008830.1.CDS.8CsGy6G008830.1.CDS.8CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G008830.1.three_prime_UTR.1CsGy6G008830.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy6G008830.1CsGy6G008830.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 131..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR34554FAMILY NOT NAMEDcoord: 129..244
NoneNo IPR availablePANTHERPTHR34554FAMILY NOT NAMEDcoord: 1..129
NoneNo IPR availablePANTHERPTHR34554:SF1SUBFAMILY NOT NAMEDcoord: 1..129
NoneNo IPR availablePANTHERPTHR34554:SF1SUBFAMILY NOT NAMEDcoord: 129..244