CsGy6G002480.1 (mRNA) Cucumber (Gy14) v2

NameCsGy6G002480.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionthioredoxin-like protein slr0233
LocationChr6 : 1828847 .. 1832846 (-)
Sequence length1452
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAGATTGGGCGTCCCTCTCATTCCTTTCATCCAACGCTTCTCATTTATCAGGAACAGAATAGCTAAAATTTTCCCCTTCACTTCTCGTTGTCCGATTGAAGCCAAAACAGACGACAGAATTCCTCTATCGACATTGTGGGAGCTGAGAGAGCCTTCACATGGCGGCCTCCTTTTCAACTTCACCTTATCCTATCCTCACCTCTCACCGCTCCAATCGCTTGCCTGCATACCATTCTTCTTCATCCACCCTCTCTTTCTCCTCCTCTCTACACCTACCTCTTCAGCTTCGACGTTTTCCACTTGCAAACACTCGGATTTCACCTCCATCCTCCTCTCCATCCTTCCCTGTGGTAATCATCTCTTTTCTTTCATCTTTTTGTCGTTTTAAACGAGGAACTAATGAACAATTTGTCATCCATGGTTTTTCCATTTATTTCGCGCCTAAATTTCCTCCACTTATTCTTAATTTCTAGGTTTCTTCGCTTAATGATAACTATAGACGTTCTGGAGAACGAAACTCATATGACTTCGTTGTTTTTCTTTTATTTCTGGAATTCCTTTTTGTTTGAATTTTGATTCTAACCGTGTTTACTGCCTCCTTACGCAGAACTAGAACCTATATGGTTCATTTGTTATATTGGAGTTCGCTCATCTAGTTACATATTTGGATTTGTTTCTATCTGGTTCTATTATTTTTCCGATTCATTCCAAATCTCAGTTCTTAAGTAGTTTCCGCATTATTGTTCACTCTGAGTAGTTAGCAAGATTGCATTTCCCTTTTTCTCGTGCTTCATGCGCTTGAAAGCACAACTGCTGCATTCGTATTTTTCCTGATTCTGACGTAGTTTGTTTAAAATGGATGACAATTTTAGTTAAAACTGCTGTAATGAATAACAATGGACTTGTACGAACTTCTGTAGGTCAAAGCAAAGAACCAAACCTTCTCTTCCTTTGATGATTTACTGGCCAACTCGGACACACCTGTGTTAGTTGACTTCTATGCAACATGGTTAGTCCCTTTCTCTCTCTTCTGCACACACCTATATCTCATCACTTCTCTCTCAAAATGGTATTGGTAATCTGTGGGAATCATATTTTTAACCTATAATTTCAAAATAAGCTATTGTTCCTCTGGATCAATGAGCATGTTAGTGCTTAACTATTGAGGAGAAAATGAGAGGCATAAGGGTATTGTGGAACAGATTTTTTTTTTTTTTTTGTAGAAGGAAGTAATGTAATGTAATGTTTGTAAACGATGAGTAAAAATGTAAAATGTGGTATGTCTGTGTATTCCTTCATTTCTACTCAATGAAAGTTGTTTCAATAATAACAGAAATACTGAGTAAACATAGCTCCTCTATCGCAGGTGTGGTCCTTGTCAGTTCATGGTTCCTATTCTTGAACAAGTTAGTGCAGCACTGATTGACAAAGTCCAGGTGGTCAAGATTGACACCGAAAAATATCCTGCCATTGCTGATAAATACAGAATAGAGGCATTGCCTACATTCATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTCGTAAGTGAAAGCTTTATATTTTTTCTAGCCAATTGGAGATATATCAAATGTATGATAAGTTTAGGCATGAAGAAACGACATATATGTTTCAGAATCTTATTCGATTTCATTTTTGAGTTGAACTAAAATGGGAAGTTTTCAAATGATTAGTTGTGTCAAGAAAGTCTGATTATTCTTGAAGTTTCTATTAAGATTTATCCTTTAATACCTCAAAACCATTGTCTACTGTATCTTTACTCTACTTTTTACCCAGTTTAATTTCAAAGAGTTAAAAAGGGTAGGCCCAAGCTTCCATTGTGCAGTTTGCTACCGTTGATTTAATCACATTAGCACATCTTCTTTCTTGCTAGGCTACAACTATTTTTCCTTTTCTGTTAGTTCTAGTGCTATCTCATAAACAGTTTTTTAACATTTTAGACTTCCCTGTTGAAATGTCTGGCAAATGGACGTTCGGTTTCTTGTGCTTGGATTATTTATTATTTATTTTAAACATGCATGCAAATTATATATATTCAGGAAGGAGCTTTGGCTGCGCGTGAGCTCATCCAACGCATTGAAGATTCTCTGAAGGTTAAGCAATAACAGTGGTGAGATTCTATACCCCGATTGAGGAGTTTATCTAAACTTGCATGCTTAAAAGATTTAGCACCCCAAACCAAATCCCTGACTGTAATCAAAATCAATTTTTTGCTAATAATTTTAGATTCACGTTCTGATAAATATGAATAGATGAAACGTAAAATACTTTGTTGGTTTATAATGCATTTAAAGGAGTAGACACAGTAAGCACACAACTCACATTTAGAGGGTCTATCAAATTAGAATCAACTTGCTAATGTAAAAGTGTCAATTCTGGTTATAATAACCATACCCAAGACTAAGTTGGGGACTTCAGCCTCTTGCTTGGTAGTTGACCTAGACTATACCTTTCCTTAGTAGTTTCCAATTCTGATTCATGGGGCTATCGTCCATGTGCCTGGTTCTTTTTTAACATTGAAAGCAGTTTAGTATCACTCTGTCACATGTTCGGCTTTCACTTTTTATTTTTTTTATTAACCTTTCTCCACAAAGCTTCTGCGAGGGTGGTAAGAAAATAGTTATAACTGGTATCTACACCCAAACATAAATTATTGTAATCCACAAACTATAATAACCAACTCAACATCCCACACACTTAAAGTTTCCTTTTAGTACTCTAGAGTTTAGTCTTCTTTGCCTGAACTTGATAAACTTATTCCGTTAATTAAAGGACAAGTGGACAACTAATTTTGTTATCTGGTCGATCATCAAGAATATGATATTGTATTCCATGGCATGTCTTTTCAAGTGTTTATTCATCTTGAACTTTGATTAAAATTTCAAAGTTAATCACCTACTAAATATTTAAAAACACTCTAATTTTTCAAAGTTGTATGTATCTATAGTTTCTTCATTCTTGAGTTCTCAAATCTTATAAGTATTTGAATGTAGGTTGATAATTAACAATATTAATTATGCCAATTGAGATTAAAGTATTACTTTTGTATCAATTGACTTGTATGACAGAAATACTCTATTGAGAAGTTTCCTGATACTACAAGTATAAACTATAAAATTTTGAGAACACGTGATTTATTCTTCTAAAATTCTGGGATGTTGAACATGCAGGGGAGATGTGACTGAGAAATTAAAGAAATGGAAATCAATGTCTTCAACAGGAATTCTGGGTATGATAGATGAGAAACTTCAATAAAATTAACCCCCCTCTCAAACCAAAAAATGAAAAAAAGAAAAAAAAGAACATTTTAGACCACTCTGTAAACTTGTATGTAATTGAAATACCTTGAAGAATGTAACTATAGACGTTCGTATTAATCCCAATTTTTGTGTTCATTTTATTGCAATAAGATGCTTAATGTTCCTGATAAATAAACATTCAGTTTGTGGCTATGTTTACAATGTTGATGAATTAGTACAAGGGTATTCTTAAGTGGCAGAGTGGGCTTGGGCTTGCTGCCACGATCTACTGTGACCTAGTCCTTTGTTACTCCGATTTGAAAAAATACAATGTTGATGAATTGGTGATAGATGCGTAATAAGATGGGGAATTGTTACACATTTGATTTTTTAATTTGAGTAATTATTCTTTTAGAGTCATGAAATTGTTGCAATTATTCAATTAGATCATATTGTGCTATAATTTTGGTTTTGAATTGCAACGGCTTTTTATAAGTTCAATGCGTTATTTCCTACTGTTTGATAGGAATGCTTAGGTATTCTCATAGATTTAGATAGGGATTTGTTGGGAAATTTTGGTTACAAAGGAAGCGAAGGGAGAGGAAAAGGAACGAAGAAGAAACCAATATTTTTGTCAGGGGTAAATGGCTCGACTTGGCTTGGTTTTTGAAGAAAATTAGAACGAATTGTTTAAACAGTAAATGAAATTGAGCAACCGAACAAGTCCACCTGAATGAT

mRNA sequence

GTCAGATTGGGCGTCCCTCTCATTCCTTTCATCCAACGCTTCTCATTTATCAGGAACAGAATAGCTAAAATTTTCCCCTTCACTTCTCGTTGTCCGATTGAAGCCAAAACAGACGACAGAATTCCTCTATCGACATTGTGGGAGCTGAGAGAGCCTTCACATGGCGGCCTCCTTTTCAACTTCACCTTATCCTATCCTCACCTCTCACCGCTCCAATCGCTTGCCTGCATACCATTCTTCTTCATCCACCCTCTCTTTCTCCTCCTCTCTACACCTACCTCTTCAGCTTCGACGTTTTCCACTTGCAAACACTCGGATTTCACCTCCATCCTCCTCTCCATCCTTCCCTGTGGTCAAAGCAAAGAACCAAACCTTCTCTTCCTTTGATGATTTACTGGCCAACTCGGACACACCTGTGTTAGTTGACTTCTATGCAACATGTGCAGCACTGATTGACAAAGTCCAGGTGGTCAAGATTGACACCGAAAAATATCCTGCCATTGCTGATAAATACAGAATAGAGGCATTGCCTACATTCATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTCGAAGGAGCTTTGGCTGCGCGTGAGCTCATCCAACGCATTGAAGATTCTCTGAAGGTTAAGCAATAACAGTGGGGAGATGTGACTGAGAAATTAAAGAAATGGAAATCAATGTCTTCAACAGGAATTCTGGGTATGATAGATGAGAAACTTCAATAAAATTAACCCCCCTCTCAAACCAAAAAATGAAAAAAAGAAAAAAAAGAACATTTTAGACCACTCTGTAAACTTGTATGTAATTGAAATACCTTGAAGAATGTAACTATAGACGTTCGTATTAATCCCAATTTTTGTGTTCATTTTATTGCAATAAGATGCTTAATGTTCCTGATAAATAAACATTCAGTTTGTGGCTATGTTTACAATGTTGATGAATTAGTACAAGGGTATTCTTAAGTGGCAGAGTGGGCTTGGGCTTGCTGCCACGATCTACTGTGACCTAGTCCTTTGTTACTCCGATTTGAAAAAATACAATGTTGATGAATTGGTGATAGATGCGTAATAAGATGGGGAATTGTTACACATTTGATTTTTTAATTTGAGTAATTATTCTTTTAGAGTCATGAAATTGTTGCAATTATTCAATTAGATCATATTGTGCTATAATTTTGGTTTTGAATTGCAACGGCTTTTTATAAGTTCAATGCGTTATTTCCTACTGTTTGATAGGAATGCTTAGGTATTCTCATAGATTTAGATAGGGATTTGTTGGGAAATTTTGGTTACAAAGGAAGCGAAGGGAGAGGAAAAGGAACGAAGAAGAAACCAATATTTTTGTCAGGGGTAAATGGCTCGACTTGGCTTGGTTTTTGAAGAAAATTAGAACGAATTGTTTAAACAGTAAATGAAATTGAGCAACCGAACAAGTCCACCTGAATGAT

Coding sequence (CDS)

ATGGCGGCCTCCTTTTCAACTTCACCTTATCCTATCCTCACCTCTCACCGCTCCAATCGCTTGCCTGCATACCATTCTTCTTCATCCACCCTCTCTTTCTCCTCCTCTCTACACCTACCTCTTCAGCTTCGACGTTTTCCACTTGCAAACACTCGGATTTCACCTCCATCCTCCTCTCCATCCTTCCCTGTGGTCAAAGCAAAGAACCAAACCTTCTCTTCCTTTGATGATTTACTGGCCAACTCGGACACACCTGTGTTAGTTGACTTCTATGCAACATGTGCAGCACTGATTGACAAAGTCCAGGTGGTCAAGATTGACACCGAAAAATATCCTGCCATTGCTGATAAATACAGAATAGAGGCATTGCCTACATTCATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTCGAAGGAGCTTTGGCTGCGCGTGAGCTCATCCAACGCATTGAAGATTCTCTGAAGGTTAAGCAATAA

Protein sequence

MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSPSFPVVKAKNQTFSSFDDLLANSDTPVLVDFYATCAALIDKVQVVKIDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ
BLAST of CsGy6G002480.1 vs. NCBI nr
Match: XP_004138379.1 (PREDICTED: thioredoxin Y1, chloroplastic [Cucumis sativus] >KGN45865.1 hypothetical protein Csa_6G014850 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.8e-75
Identity = 157/174 (90.23%), Postives = 158/174 (90.80%), Query Frame = 0

Query: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60
           MAASFSTSPYPILTSHRSNRLPAYHSSSS+LSFSSSLHLPLQLRRFPLANTRISPPSSSP
Sbjct: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSSLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60

Query: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT---------------CAALIDKVQVVK 120
           SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT                AALIDKVQVVK
Sbjct: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYATWCGPCQFMVPILEQVSAALIDKVQVVK 120

Query: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ
Sbjct: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 174

BLAST of CsGy6G002480.1 vs. NCBI nr
Match: XP_008463079.1 (PREDICTED: thioredoxin-like protein slr0233 [Cucumis melo] >XP_016902975.1 PREDICTED: thioredoxin-like protein slr0233 [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 8.7e-69
Identity = 147/174 (84.48%), Postives = 150/174 (86.21%), Query Frame = 0

Query: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60
           MAASFSTSPYP+LTSHRSNRLPAYHSSSS LS SSSLHLPLQLRRF L NTRISPPS S 
Sbjct: 1   MAASFSTSPYPLLTSHRSNRLPAYHSSSSALSSSSSLHLPLQLRRFRLGNTRISPPSPSR 60

Query: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT---------------CAALIDKVQVVK 120
           + P+VKAKNQTFSSFDDLLANSD PVLVDFYAT                AALIDKVQVVK
Sbjct: 61  TLPLVKAKNQTFSSFDDLLANSDKPVLVDFYATWCGPCQFMVPILEKVSAALIDKVQVVK 120

Query: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ
Sbjct: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 174

BLAST of CsGy6G002480.1 vs. NCBI nr
Match: XP_022932802.1 (thioredoxin Y2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 219.9 bits (559), Expect = 6.0e-54
Identity = 127/174 (72.99%), Postives = 133/174 (76.44%), Query Frame = 0

Query: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60
           MAAS STSPYP+LTS RSNR     SSSS L FSSSL LP+QLR   L N  IS PS S 
Sbjct: 1   MAASISTSPYPLLTSERSNRFAVNDSSSSRLFFSSSLQLPVQLRCVRLGNCGISAPSRSR 60

Query: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT-CA--------------ALIDKVQVVK 120
            FPVVKAKNQTFSSFDDLLANSD PVLVDFYAT C               AL D VQVVK
Sbjct: 61  IFPVVKAKNQTFSSFDDLLANSDKPVLVDFYATWCGPCQFMVPILEKVSDALSDTVQVVK 120

Query: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           IDTEKYP IADKY+IEALPTFILFKDGKPLDRFEGA+AA ELIQRIE+SLK+KQ
Sbjct: 121 IDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGAVAAGELIQRIENSLKIKQ 174

BLAST of CsGy6G002480.1 vs. NCBI nr
Match: XP_022974037.1 (thioredoxin Y1, chloroplastic-like [Cucurbita maxima] >XP_022974038.1 thioredoxin Y1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 219.9 bits (559), Expect = 6.0e-54
Identity = 129/174 (74.14%), Postives = 133/174 (76.44%), Query Frame = 0

Query: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60
           MAAS STSPYP+LTS RSNR  A  SSSS L  SSSL LP+QLR   L N  IS PS S 
Sbjct: 1   MAASISTSPYPLLTSERSNRFAANDSSSSRLFSSSSLQLPVQLRCVRLGNCGISAPSRSR 60

Query: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT-CA--------------ALIDKVQVVK 120
            FPVVKAKNQTFSSFDDLLANSD PVLVDFYAT C               AL D VQVVK
Sbjct: 61  IFPVVKAKNQTFSSFDDLLANSDKPVLVDFYATWCGPCQFMVPILEKVSDALSDTVQVVK 120

Query: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           IDTEKYP IADKY+IEALPTFILFKDGKPLDRFEGALAA ELIQRIE+SLKVKQ
Sbjct: 121 IDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELIQRIENSLKVKQ 174

BLAST of CsGy6G002480.1 vs. NCBI nr
Match: XP_022152246.1 (thioredoxin Y2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 128/175 (73.14%), Postives = 132/175 (75.43%), Query Frame = 0

Query: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSST-LSFSSSLHLPLQLRRFPLANTRISPPSSS 60
           MAAS STSPYP+LTS RSNR PA  SSSS+  S SSSLHLP Q R F L N  IS PS S
Sbjct: 1   MAASISTSPYPLLTSERSNRFPANDSSSSSRFSSSSSLHLPPQFRCFRLGNNGISAPSRS 60

Query: 61  PSFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT---------------CAALIDKVQVV 120
              PVVKAKNQTFSSFDDLLANSD PV VDFYAT                A L D VQVV
Sbjct: 61  RILPVVKAKNQTFSSFDDLLANSDKPVFVDFYATWCGPCQFMVPILEKVSATLGDTVQVV 120

Query: 121 KIDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           KIDTEKYPAIADKY+IEALPTFILFKDGK LDRFEGAL AR+LIQRIEDSLKVKQ
Sbjct: 121 KIDTEKYPAIADKYKIEALPTFILFKDGKLLDRFEGALTARDLIQRIEDSLKVKQ 175

BLAST of CsGy6G002480.1 vs. TAIR10
Match: AT1G76760.1 (thioredoxin Y1)

HSP 1 Score: 142.1 bits (357), Expect = 2.9e-34
Identity = 88/172 (51.16%), Postives = 111/172 (64.53%), Query Frame = 0

Query: 4   SFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSPSFP 63
           S S+S  P L S  S+ + A+ S S      S++     +RR    + +    SS+    
Sbjct: 5   SLSSSTVPSLNSKESSGVSAFASRS-----ISAVKFQFPVRRVRTGDLKFPSLSSTTRCT 64

Query: 64  V--VKAKNQTFSSFDDLLANSDTPVLVDFYAT----CAALI-----------DKVQVVKI 123
              ++AK QTF SF+DLL NSD PVLVD+YAT    C  ++           DK+QVVKI
Sbjct: 65  PRRIEAKKQTFDSFEDLLVNSDKPVLVDYYATWCGPCQFMVPILNEVSETLKDKIQVVKI 124

Query: 124 DTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVK 159
           DTEKYP+IA+KY+IEALPTFILFKDG+P DRFEGAL A++LIQRIEDSLKVK
Sbjct: 125 DTEKYPSIANKYKIEALPTFILFKDGEPCDRFEGALTAKQLIQRIEDSLKVK 171

BLAST of CsGy6G002480.1 vs. TAIR10
Match: AT1G43560.1 (thioredoxin Y2)

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-30
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 0

Query: 67  AKNQTFSSFDDLLANSDTPVLVDFYAT----CAALI-----------DKVQVVKIDTEKY 126
           AK QTF+SFDDLL NSD PVLVDFYAT    C  ++           D + VVKIDTEKY
Sbjct: 60  AKKQTFNSFDDLLQNSDKPVLVDFYATWCGPCQLMVPILNEVSETLKDIIAVVKIDTEKY 119

Query: 127 PAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           P++A+KY+IEALPTFILFKDGK  DRFEGAL A +L++RIE+SL+VKQ
Sbjct: 120 PSLANKYQIEALPTFILFKDGKLWDRFEGALPANQLVERIENSLQVKQ 167

BLAST of CsGy6G002480.1 vs. TAIR10
Match: AT1G50320.1 (thioredoxin X)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 36/100 (36.00%), Postives = 51/100 (51.00%), Query Frame = 0

Query: 73  SSFDDLLANSDTPVLVDFYAT----CAALI-----------DKVQVVKIDTEKYPAIADK 132
           S F   +  S  PVLV+F AT    C  +            DK+ +VKID +  P +  +
Sbjct: 77  SEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAE 136

Query: 133 YRIEALPTFILFKDGK--PLDRFEGALAARELIQRIEDSL 156
           +++  LP FILFKDGK  P  R EGA+   +L + I+  L
Sbjct: 137 FKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYIDGLL 176

BLAST of CsGy6G002480.1 vs. TAIR10
Match: AT3G15360.1 (thioredoxin M-type 4)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 43/143 (30.07%), Postives = 70/143 (48.95%), Query Frame = 0

Query: 26  SSSSTLSFSSSLHLPLQLRRFPLA-NTRISPPSSSPSFPVVKAKNQTFSSFDDLLANSDT 85
           SS S ++ S+SL      RR  +A   RI+  +   +   V+  N + S +   +  SD 
Sbjct: 49  SSRSLVTQSASLGAN---RRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDV 108

Query: 86  PVLVDFYATCAA-------LID--------KVQVVKIDTEKYPAIADKYRIEALPTFILF 145
           PVLV+F+A           ++D        K +  KI+T++ P  A++Y I ++PT I+F
Sbjct: 109 PVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIF 168

Query: 146 KDGKPLDRFEGALAARELIQRIE 153
           K G+  D   GA+    L + IE
Sbjct: 169 KGGEKKDSIIGAVPRETLEKTIE 188

BLAST of CsGy6G002480.1 vs. TAIR10
Match: AT4G04950.1 (thioredoxin family protein)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 0

Query: 77  DLLANSDTPVLVDFYAT-CAALIDKVQV-------------VKIDTEKYPAIADKYRIEA 136
           D L  S  PV++ F+A+ C A     QV              +++ E++P I++ Y + A
Sbjct: 15  DNLRQSGAPVVLHFWASWCDASKQMDQVFSHLATDFPRAHFFRVEAEEHPEISEAYSVAA 74

Query: 137 LPTFILFKDGKPLDRFEGA 142
           +P F+ FKDGK +D  EGA
Sbjct: 75  VPYFVFFKDGKTVDTLEGA 93

BLAST of CsGy6G002480.1 vs. Swiss-Prot
Match: sp|Q6NPF9|TRXY1_ARATH (Thioredoxin Y1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g76760 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-33
Identity = 88/172 (51.16%), Postives = 111/172 (64.53%), Query Frame = 0

Query: 4   SFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSPSFP 63
           S S+S  P L S  S+ + A+ S S      S++     +RR    + +    SS+    
Sbjct: 5   SLSSSTVPSLNSKESSGVSAFASRS-----ISAVKFQFPVRRVRTGDLKFPSLSSTTRCT 64

Query: 64  V--VKAKNQTFSSFDDLLANSDTPVLVDFYAT----CAALI-----------DKVQVVKI 123
              ++AK QTF SF+DLL NSD PVLVD+YAT    C  ++           DK+QVVKI
Sbjct: 65  PRRIEAKKQTFDSFEDLLVNSDKPVLVDYYATWCGPCQFMVPILNEVSETLKDKIQVVKI 124

Query: 124 DTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVK 159
           DTEKYP+IA+KY+IEALPTFILFKDG+P DRFEGAL A++LIQRIEDSLKVK
Sbjct: 125 DTEKYPSIANKYKIEALPTFILFKDGEPCDRFEGALTAKQLIQRIEDSLKVK 171

BLAST of CsGy6G002480.1 vs. Swiss-Prot
Match: sp|Q8L7S9|TRXY2_ARATH (Thioredoxin Y2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g43560 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-29
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 0

Query: 67  AKNQTFSSFDDLLANSDTPVLVDFYAT----CAALI-----------DKVQVVKIDTEKY 126
           AK QTF+SFDDLL NSD PVLVDFYAT    C  ++           D + VVKIDTEKY
Sbjct: 60  AKKQTFNSFDDLLQNSDKPVLVDFYATWCGPCQLMVPILNEVSETLKDIIAVVKIDTEKY 119

Query: 127 PAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           P++A+KY+IEALPTFILFKDGK  DRFEGAL A +L++RIE+SL+VKQ
Sbjct: 120 PSLANKYQIEALPTFILFKDGKLWDRFEGALPANQLVERIENSLQVKQ 167

BLAST of CsGy6G002480.1 vs. Swiss-Prot
Match: sp|Q5JMR9|TRXY_ORYSJ (Thioredoxin Y, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0963400 PE=3 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 5.6e-27
Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = 0

Query: 65  VKAKNQTFSSFDDLLANSDTPVLVDFYAT----CAALI-----------DKVQVVKIDTE 124
           V+AK QTFSSFD+LL  S+ PVLVDFYAT    C  ++           DK+QVVKIDTE
Sbjct: 59  VQAKKQTFSSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTE 118

Query: 125 KYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKV 158
           KY +IA++Y+IEALPTFI+FK+GKP  RFEGAL A +LIQ+IE +L+V
Sbjct: 119 KYTSIANRYQIEALPTFIIFKNGKPCHRFEGALPANQLIQQIESALEV 166

BLAST of CsGy6G002480.1 vs. Swiss-Prot
Match: sp|P52232|THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr0233 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 67  AKNQTFSSFDDLLANSDTPVLVDFYATCAA---------------LIDKVQVVKIDTEKY 126
           A  + F++F ++LA S  PVLVDFYAT                  L  ++QVVKIDT+KY
Sbjct: 2   AVKKQFANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKY 61

Query: 127 PAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIE 153
           PAIA +Y+I++LPT +LFK G+P+ R EG   A +LIQ+++
Sbjct: 62  PAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQ 102

BLAST of CsGy6G002480.1 vs. Swiss-Prot
Match: sp|P0A4L1|THIO1_NOSS1 (Thioredoxin 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=trxA PE=3 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 0

Query: 67  AKNQTFSSFDDLLANSDTPVLVDFYA-------TCAALID--------KVQVVKIDTEKY 126
           A   T S+F   + +SD PVLVDF+A         A ++D        K++VVK++T++ 
Sbjct: 4   AAQVTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDEN 63

Query: 127 PAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSL 156
           P +A +Y I ++PT ++FK G+ +D   GA+    L Q +E  L
Sbjct: 64  PQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107

BLAST of CsGy6G002480.1 vs. TrEMBL
Match: tr|A0A0A0K7X7|A0A0A0K7X7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014850 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.8e-75
Identity = 157/174 (90.23%), Postives = 158/174 (90.80%), Query Frame = 0

Query: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60
           MAASFSTSPYPILTSHRSNRLPAYHSSSS+LSFSSSLHLPLQLRRFPLANTRISPPSSSP
Sbjct: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSSLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60

Query: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT---------------CAALIDKVQVVK 120
           SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT                AALIDKVQVVK
Sbjct: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYATWCGPCQFMVPILEQVSAALIDKVQVVK 120

Query: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ
Sbjct: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 174

BLAST of CsGy6G002480.1 vs. TrEMBL
Match: tr|A0A1S3CIC6|A0A1S3CIC6_CUCME (thioredoxin-like protein slr0233 OS=Cucumis melo OX=3656 GN=LOC103501315 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 5.7e-69
Identity = 147/174 (84.48%), Postives = 150/174 (86.21%), Query Frame = 0

Query: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60
           MAASFSTSPYP+LTSHRSNRLPAYHSSSS LS SSSLHLPLQLRRF L NTRISPPS S 
Sbjct: 1   MAASFSTSPYPLLTSHRSNRLPAYHSSSSALSSSSSLHLPLQLRRFRLGNTRISPPSPSR 60

Query: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT---------------CAALIDKVQVVK 120
           + P+VKAKNQTFSSFDDLLANSD PVLVDFYAT                AALIDKVQVVK
Sbjct: 61  TLPLVKAKNQTFSSFDDLLANSDKPVLVDFYATWCGPCQFMVPILEKVSAALIDKVQVVK 120

Query: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ
Sbjct: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 174

BLAST of CsGy6G002480.1 vs. TrEMBL
Match: tr|A0A2P6PRW6|A0A2P6PRW6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0275081 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.3e-40
Identity = 104/174 (59.77%), Postives = 117/174 (67.24%), Query Frame = 0

Query: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60
           MA S + S  P L S R+ RL    SSSS LS SSSL  PL LRR  +    +S PS   
Sbjct: 1   MAVSVAASSIPSLCSDRTTRLA---SSSSNLSSSSSLQFPLHLRRLRIPTYGVSAPSRPR 60

Query: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT---------------CAALIDKVQVVK 120
             P V+AK QTFS+FDDLLANSD PVLVDFYAT                  L DK+QVVK
Sbjct: 61  ILPPVEAKKQTFSNFDDLLANSDRPVLVDFYATWCGPCQFMAPILNEVSITLNDKIQVVK 120

Query: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           IDTEKYP+IADKY I+ALPTFI+FKDGKP DRFEGAL A +LI+RIE +LKVKQ
Sbjct: 121 IDTEKYPSIADKYGIQALPTFIIFKDGKPYDRFEGALNADQLIERIETALKVKQ 171

BLAST of CsGy6G002480.1 vs. TrEMBL
Match: tr|A0A2I4GW82|A0A2I4GW82_9ROSI (thioredoxin Y1, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109011407 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 105/174 (60.34%), Postives = 119/174 (68.39%), Query Frame = 0

Query: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60
           MA S STS  P L S  SNRL A  SSSS+L F      PL++ +  +  T +  P S P
Sbjct: 1   MAVSISTSTIPSLNSGCSNRLAAPSSSSSSLQF------PLRVPQVRIGTTGVCSP-SRP 60

Query: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT---------------CAALIDKVQVVK 120
              +VKA  QTFSSFDDLLAN+D PVLVDFYAT                A L DK+QVVK
Sbjct: 61  RVLLVKAAKQTFSSFDDLLANTDKPVLVDFYATWCGPCQFMAPVLSEVSARLKDKIQVVK 120

Query: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           IDTEKYP+IADKYRIEALPTFI+FKDG+P DRFEGAL A +LIQRIE+SLKVKQ
Sbjct: 121 IDTEKYPSIADKYRIEALPTFIMFKDGEPYDRFEGALTADQLIQRIENSLKVKQ 167

BLAST of CsGy6G002480.1 vs. TrEMBL
Match: tr|D7SRD7|D7SRD7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0072g00400 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.8e-39
Identity = 105/175 (60.00%), Postives = 118/175 (67.43%), Query Frame = 0

Query: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSS-LHLPLQLRRFPLANTRISPPSSS 60
           MA S + S    L S R   L    SS S+  FSSS L  P QLR   + N  IS PS  
Sbjct: 1   MATSLTFSTVRALNSQRPTPLAFSSSSPSSKLFSSSPLQFPRQLRPIRIGNNGISSPSRP 60

Query: 61  PSFPVVKAKNQTFSSFDDLLANSDTPVLVDFYAT----C-----------AALIDKVQVV 120
            + PVV+AK QTFSS D+LLANS+ PVLVDFYAT    C           A+L DK+QVV
Sbjct: 61  RTLPVVEAKKQTFSSLDELLANSEKPVLVDFYATWCGPCQFMVPILNEVGASLKDKIQVV 120

Query: 121 KIDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 160
           KIDTEKYP+IADKYRIEALPTFI+FKDGKP DRFEGAL A +LIQRIE +LKVKQ
Sbjct: 121 KIDTEKYPSIADKYRIEALPTFIIFKDGKPYDRFEGALTADQLIQRIETTLKVKQ 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004138379.12.8e-7590.23PREDICTED: thioredoxin Y1, chloroplastic [Cucumis sativus] >KGN45865.1 hypotheti... [more]
XP_008463079.18.7e-6984.48PREDICTED: thioredoxin-like protein slr0233 [Cucumis melo] >XP_016902975.1 PREDI... [more]
XP_022932802.16.0e-5472.99thioredoxin Y2, chloroplastic [Cucurbita moschata][more]
XP_022974037.16.0e-5474.14thioredoxin Y1, chloroplastic-like [Cucurbita maxima] >XP_022974038.1 thioredoxi... [more]
XP_022152246.11.8e-5373.14thioredoxin Y2, chloroplastic-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G76760.12.9e-3451.16thioredoxin Y1[more]
AT1G43560.12.5e-3063.89thioredoxin Y2[more]
AT1G50320.12.3e-0736.00thioredoxin X[more]
AT3G15360.11.3e-0530.07thioredoxin M-type 4[more]
AT4G04950.11.3e-0534.18thioredoxin family protein[more]
Match NameE-valueIdentityDescription
sp|Q6NPF9|TRXY1_ARATH5.2e-3351.16Thioredoxin Y1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g76760 PE=2 ... [more]
sp|Q8L7S9|TRXY2_ARATH4.6e-2963.89Thioredoxin Y2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g43560 PE=2 ... [more]
sp|Q5JMR9|TRXY_ORYSJ5.6e-2760.19Thioredoxin Y, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g09... [more]
sp|P52232|THIO1_SYNY31.2e-1645.54Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)... [more]
sp|P0A4L1|THIO1_NOSS12.0e-0834.62Thioredoxin 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 ... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0K7X7|A0A0A0K7X7_CUCSA1.8e-7590.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014850 PE=4 SV=1[more]
tr|A0A1S3CIC6|A0A1S3CIC6_CUCME5.7e-6984.48thioredoxin-like protein slr0233 OS=Cucumis melo OX=3656 GN=LOC103501315 PE=4 SV... [more]
tr|A0A2P6PRW6|A0A2P6PRW6_ROSCH4.3e-4059.77Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0275081 PE=4... [more]
tr|A0A2I4GW82|A0A2I4GW82_9ROSI1.2e-3960.34thioredoxin Y1, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109011407 PE=... [more]
tr|D7SRD7|D7SRD7_VITVI2.8e-3960.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0072g00400 PE=4 SV=... [more]
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0034599 cellular response to oxidative stress
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function GO:0047134 protein-disulfide reductase activity
molecular_function GO:0004791 thioredoxin-disulfide reductase activity

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy6G002480CsGy6G002480gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy6G002480.1CsGy6G002480.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G002480.1.five_prime_UTR.1CsGy6G002480.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G002480.1.exon.5CsGy6G002480.1.exon.5exon
CsGy6G002480.1.exon.4CsGy6G002480.1.exon.4exon
CsGy6G002480.1.exon.3CsGy6G002480.1.exon.3exon
CsGy6G002480.1.exon.2CsGy6G002480.1.exon.2exon
CsGy6G002480.1.exon.1CsGy6G002480.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G002480.1.CDS.4CsGy6G002480.1.CDS.4CDS
CsGy6G002480.1.CDS.3CsGy6G002480.1.CDS.3CDS
CsGy6G002480.1.CDS.2CsGy6G002480.1.CDS.2CDS
CsGy6G002480.1.CDS.1CsGy6G002480.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G002480.1.three_prime_UTR.2CsGy6G002480.1.three_prime_UTR.2three_prime_UTR
CsGy6G002480.1.three_prime_UTR.1CsGy6G002480.1.three_prime_UTR.1three_prime_UTR


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 96..152
e-value: 4.4E-10
score: 39.3
NoneNo IPR availableGENE3DG3DSA:3.40.30.10coord: 64..158
e-value: 8.3E-15
score: 56.5
NoneNo IPR availablePANTHERPTHR10438:SF280THIOREDOXIN Y1, CHLOROPLASTIC-RELATEDcoord: 97..159
coord: 13..93
NoneNo IPR availableCDDcd02947TRX_familycoord: 73..152
e-value: 3.67316E-22
score: 84.9172
IPR005746ThioredoxinPANTHERPTHR10438THIOREDOXINcoord: 97..159
coord: 13..93
IPR036249Thioredoxin-like superfamilySUPERFAMILYSSF52833Thioredoxin-likecoord: 71..156