CsGy6G002480.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTCAGATTGGGCGTCCCTCTCATTCCTTTCATCCAACGCTTCTCATTTATCAGGAACAGAATAGCTAAAATTTTCCCCTTCACTTCTCGTTGTCCGATTGAAGCCAAAACAGACGACAGAATTCCTCTATCGACATTGTGGGAGCTGAGAGAGCCTTCACATGGCGGCCTCCTTTTCAACTTCACCTTATCCTATCCTCACCTCTCACCGCTCCAATCGCTTGCCTGCATACCATTCTTCTTCATCCACCCTCTCTTTCTCCTCCTCTCTACACCTACCTCTTCAGCTTCGACGTTTTCCACTTGCAAACACTCGGATTTCACCTCCATCCTCCTCTCCATCCTTCCCTGTGGTAATCATCTCTTTTCTTTCATCTTTTTGTCGTTTTAAACGAGGAACTAATGAACAATTTGTCATCCATGGTTTTTCCATTTATTTCGCGCCTAAATTTCCTCCACTTATTCTTAATTTCTAGGTTTCTTCGCTTAATGATAACTATAGACGTTCTGGAGAACGAAACTCATATGACTTCGTTGTTTTTCTTTTATTTCTGGAATTCCTTTTTGTTTGAATTTTGATTCTAACCGTGTTTACTGCCTCCTTACGCAGAACTAGAACCTATATGGTTCATTTGTTATATTGGAGTTCGCTCATCTAGTTACATATTTGGATTTGTTTCTATCTGGTTCTATTATTTTTCCGATTCATTCCAAATCTCAGTTCTTAAGTAGTTTCCGCATTATTGTTCACTCTGAGTAGTTAGCAAGATTGCATTTCCCTTTTTCTCGTGCTTCATGCGCTTGAAAGCACAACTGCTGCATTCGTATTTTTCCTGATTCTGACGTAGTTTGTTTAAAATGGATGACAATTTTAGTTAAAACTGCTGTAATGAATAACAATGGACTTGTACGAACTTCTGTAGGTCAAAGCAAAGAACCAAACCTTCTCTTCCTTTGATGATTTACTGGCCAACTCGGACACACCTGTGTTAGTTGACTTCTATGCAACATGGTTAGTCCCTTTCTCTCTCTTCTGCACACACCTATATCTCATCACTTCTCTCTCAAAATGGTATTGGTAATCTGTGGGAATCATATTTTTAACCTATAATTTCAAAATAAGCTATTGTTCCTCTGGATCAATGAGCATGTTAGTGCTTAACTATTGAGGAGAAAATGAGAGGCATAAGGGTATTGTGGAACAGATTTTTTTTTTTTTTTTGTAGAAGGAAGTAATGTAATGTAATGTTTGTAAACGATGAGTAAAAATGTAAAATGTGGTATGTCTGTGTATTCCTTCATTTCTACTCAATGAAAGTTGTTTCAATAATAACAGAAATACTGAGTAAACATAGCTCCTCTATCGCAGGTGTGGTCCTTGTCAGTTCATGGTTCCTATTCTTGAACAAGTTAGTGCAGCACTGATTGACAAAGTCCAGGTGGTCAAGATTGACACCGAAAAATATCCTGCCATTGCTGATAAATACAGAATAGAGGCATTGCCTACATTCATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTCGTAAGTGAAAGCTTTATATTTTTTCTAGCCAATTGGAGATATATCAAATGTATGATAAGTTTAGGCATGAAGAAACGACATATATGTTTCAGAATCTTATTCGATTTCATTTTTGAGTTGAACTAAAATGGGAAGTTTTCAAATGATTAGTTGTGTCAAGAAAGTCTGATTATTCTTGAAGTTTCTATTAAGATTTATCCTTTAATACCTCAAAACCATTGTCTACTGTATCTTTACTCTACTTTTTACCCAGTTTAATTTCAAAGAGTTAAAAAGGGTAGGCCCAAGCTTCCATTGTGCAGTTTGCTACCGTTGATTTAATCACATTAGCACATCTTCTTTCTTGCTAGGCTACAACTATTTTTCCTTTTCTGTTAGTTCTAGTGCTATCTCATAAACAGTTTTTTAACATTTTAGACTTCCCTGTTGAAATGTCTGGCAAATGGACGTTCGGTTTCTTGTGCTTGGATTATTTATTATTTATTTTAAACATGCATGCAAATTATATATATTCAGGAAGGAGCTTTGGCTGCGCGTGAGCTCATCCAACGCATTGAAGATTCTCTGAAGGTTAAGCAATAACAGTGGTGAGATTCTATACCCCGATTGAGGAGTTTATCTAAACTTGCATGCTTAAAAGATTTAGCACCCCAAACCAAATCCCTGACTGTAATCAAAATCAATTTTTTGCTAATAATTTTAGATTCACGTTCTGATAAATATGAATAGATGAAACGTAAAATACTTTGTTGGTTTATAATGCATTTAAAGGAGTAGACACAGTAAGCACACAACTCACATTTAGAGGGTCTATCAAATTAGAATCAACTTGCTAATGTAAAAGTGTCAATTCTGGTTATAATAACCATACCCAAGACTAAGTTGGGGACTTCAGCCTCTTGCTTGGTAGTTGACCTAGACTATACCTTTCCTTAGTAGTTTCCAATTCTGATTCATGGGGCTATCGTCCATGTGCCTGGTTCTTTTTTAACATTGAAAGCAGTTTAGTATCACTCTGTCACATGTTCGGCTTTCACTTTTTATTTTTTTTATTAACCTTTCTCCACAAAGCTTCTGCGAGGGTGGTAAGAAAATAGTTATAACTGGTATCTACACCCAAACATAAATTATTGTAATCCACAAACTATAATAACCAACTCAACATCCCACACACTTAAAGTTTCCTTTTAGTACTCTAGAGTTTAGTCTTCTTTGCCTGAACTTGATAAACTTATTCCGTTAATTAAAGGACAAGTGGACAACTAATTTTGTTATCTGGTCGATCATCAAGAATATGATATTGTATTCCATGGCATGTCTTTTCAAGTGTTTATTCATCTTGAACTTTGATTAAAATTTCAAAGTTAATCACCTACTAAATATTTAAAAACACTCTAATTTTTCAAAGTTGTATGTATCTATAGTTTCTTCATTCTTGAGTTCTCAAATCTTATAAGTATTTGAATGTAGGTTGATAATTAACAATATTAATTATGCCAATTGAGATTAAAGTATTACTTTTGTATCAATTGACTTGTATGACAGAAATACTCTATTGAGAAGTTTCCTGATACTACAAGTATAAACTATAAAATTTTGAGAACACGTGATTTATTCTTCTAAAATTCTGGGATGTTGAACATGCAGGGGAGATGTGACTGAGAAATTAAAGAAATGGAAATCAATGTCTTCAACAGGAATTCTGGGTATGATAGATGAGAAACTTCAATAAAATTAACCCCCCTCTCAAACCAAAAAATGAAAAAAAGAAAAAAAAGAACATTTTAGACCACTCTGTAAACTTGTATGTAATTGAAATACCTTGAAGAATGTAACTATAGACGTTCGTATTAATCCCAATTTTTGTGTTCATTTTATTGCAATAAGATGCTTAATGTTCCTGATAAATAAACATTCAGTTTGTGGCTATGTTTACAATGTTGATGAATTAGTACAAGGGTATTCTTAAGTGGCAGAGTGGGCTTGGGCTTGCTGCCACGATCTACTGTGACCTAGTCCTTTGTTACTCCGATTTGAAAAAATACAATGTTGATGAATTGGTGATAGATGCGTAATAAGATGGGGAATTGTTACACATTTGATTTTTTAATTTGAGTAATTATTCTTTTAGAGTCATGAAATTGTTGCAATTATTCAATTAGATCATATTGTGCTATAATTTTGGTTTTGAATTGCAACGGCTTTTTATAAGTTCAATGCGTTATTTCCTACTGTTTGATAGGAATGCTTAGGTATTCTCATAGATTTAGATAGGGATTTGTTGGGAAATTTTGGTTACAAAGGAAGCGAAGGGAGAGGAAAAGGAACGAAGAAGAAACCAATATTTTTGTCAGGGGTAAATGGCTCGACTTGGCTTGGTTTTTGAAGAAAATTAGAACGAATTGTTTAAACAGTAAATGAAATTGAGCAACCGAACAAGTCCACCTGAATGAT GTCAGATTGGGCGTCCCTCTCATTCCTTTCATCCAACGCTTCTCATTTATCAGGAACAGAATAGCTAAAATTTTCCCCTTCACTTCTCGTTGTCCGATTGAAGCCAAAACAGACGACAGAATTCCTCTATCGACATTGTGGGAGCTGAGAGAGCCTTCACATGGCGGCCTCCTTTTCAACTTCACCTTATCCTATCCTCACCTCTCACCGCTCCAATCGCTTGCCTGCATACCATTCTTCTTCATCCACCCTCTCTTTCTCCTCCTCTCTACACCTACCTCTTCAGCTTCGACGTTTTCCACTTGCAAACACTCGGATTTCACCTCCATCCTCCTCTCCATCCTTCCCTGTGGTCAAAGCAAAGAACCAAACCTTCTCTTCCTTTGATGATTTACTGGCCAACTCGGACACACCTGTGTTAGTTGACTTCTATGCAACATGTGCAGCACTGATTGACAAAGTCCAGGTGGTCAAGATTGACACCGAAAAATATCCTGCCATTGCTGATAAATACAGAATAGAGGCATTGCCTACATTCATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTCGAAGGAGCTTTGGCTGCGCGTGAGCTCATCCAACGCATTGAAGATTCTCTGAAGGTTAAGCAATAACAGTGGGGAGATGTGACTGAGAAATTAAAGAAATGGAAATCAATGTCTTCAACAGGAATTCTGGGTATGATAGATGAGAAACTTCAATAAAATTAACCCCCCTCTCAAACCAAAAAATGAAAAAAAGAAAAAAAAGAACATTTTAGACCACTCTGTAAACTTGTATGTAATTGAAATACCTTGAAGAATGTAACTATAGACGTTCGTATTAATCCCAATTTTTGTGTTCATTTTATTGCAATAAGATGCTTAATGTTCCTGATAAATAAACATTCAGTTTGTGGCTATGTTTACAATGTTGATGAATTAGTACAAGGGTATTCTTAAGTGGCAGAGTGGGCTTGGGCTTGCTGCCACGATCTACTGTGACCTAGTCCTTTGTTACTCCGATTTGAAAAAATACAATGTTGATGAATTGGTGATAGATGCGTAATAAGATGGGGAATTGTTACACATTTGATTTTTTAATTTGAGTAATTATTCTTTTAGAGTCATGAAATTGTTGCAATTATTCAATTAGATCATATTGTGCTATAATTTTGGTTTTGAATTGCAACGGCTTTTTATAAGTTCAATGCGTTATTTCCTACTGTTTGATAGGAATGCTTAGGTATTCTCATAGATTTAGATAGGGATTTGTTGGGAAATTTTGGTTACAAAGGAAGCGAAGGGAGAGGAAAAGGAACGAAGAAGAAACCAATATTTTTGTCAGGGGTAAATGGCTCGACTTGGCTTGGTTTTTGAAGAAAATTAGAACGAATTGTTTAAACAGTAAATGAAATTGAGCAACCGAACAAGTCCACCTGAATGAT ATGGCGGCCTCCTTTTCAACTTCACCTTATCCTATCCTCACCTCTCACCGCTCCAATCGCTTGCCTGCATACCATTCTTCTTCATCCACCCTCTCTTTCTCCTCCTCTCTACACCTACCTCTTCAGCTTCGACGTTTTCCACTTGCAAACACTCGGATTTCACCTCCATCCTCCTCTCCATCCTTCCCTGTGGTCAAAGCAAAGAACCAAACCTTCTCTTCCTTTGATGATTTACTGGCCAACTCGGACACACCTGTGTTAGTTGACTTCTATGCAACATGTGCAGCACTGATTGACAAAGTCCAGGTGGTCAAGATTGACACCGAAAAATATCCTGCCATTGCTGATAAATACAGAATAGAGGCATTGCCTACATTCATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTCGAAGGAGCTTTGGCTGCGCGTGAGCTCATCCAACGCATTGAAGATTCTCTGAAGGTTAAGCAATAA MAASFSTSPYPILTSHRSNRLPAYHSSSSTLSFSSSLHLPLQLRRFPLANTRISPPSSSPSFPVVKAKNQTFSSFDDLLANSDTPVLVDFYATCAALIDKVQVVKIDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ
BLAST of CsGy6G002480.1 vs. NCBI nr
Match: XP_004138379.1 (PREDICTED: thioredoxin Y1, chloroplastic [Cucumis sativus] >KGN45865.1 hypothetical protein Csa_6G014850 [Cucumis sativus]) HSP 1 Score: 290.8 bits (743), Expect = 2.8e-75 Identity = 157/174 (90.23%), Postives = 158/174 (90.80%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. NCBI nr
Match: XP_008463079.1 (PREDICTED: thioredoxin-like protein slr0233 [Cucumis melo] >XP_016902975.1 PREDICTED: thioredoxin-like protein slr0233 [Cucumis melo]) HSP 1 Score: 269.2 bits (687), Expect = 8.7e-69 Identity = 147/174 (84.48%), Postives = 150/174 (86.21%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. NCBI nr
Match: XP_022932802.1 (thioredoxin Y2, chloroplastic [Cucurbita moschata]) HSP 1 Score: 219.9 bits (559), Expect = 6.0e-54 Identity = 127/174 (72.99%), Postives = 133/174 (76.44%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. NCBI nr
Match: XP_022974037.1 (thioredoxin Y1, chloroplastic-like [Cucurbita maxima] >XP_022974038.1 thioredoxin Y1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 219.9 bits (559), Expect = 6.0e-54 Identity = 129/174 (74.14%), Postives = 133/174 (76.44%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. NCBI nr
Match: XP_022152246.1 (thioredoxin Y2, chloroplastic-like [Momordica charantia]) HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53 Identity = 128/175 (73.14%), Postives = 132/175 (75.43%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. TAIR10
Match: AT1G76760.1 (thioredoxin Y1) HSP 1 Score: 142.1 bits (357), Expect = 2.9e-34 Identity = 88/172 (51.16%), Postives = 111/172 (64.53%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. TAIR10
Match: AT1G43560.1 (thioredoxin Y2) HSP 1 Score: 129.0 bits (323), Expect = 2.5e-30 Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. TAIR10
Match: AT1G50320.1 (thioredoxin X) HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07 Identity = 36/100 (36.00%), Postives = 51/100 (51.00%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. TAIR10
Match: AT3G15360.1 (thioredoxin M-type 4) HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05 Identity = 43/143 (30.07%), Postives = 70/143 (48.95%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. TAIR10
Match: AT4G04950.1 (thioredoxin family protein) HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05 Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. Swiss-Prot
Match: sp|Q6NPF9|TRXY1_ARATH (Thioredoxin Y1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g76760 PE=2 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 5.2e-33 Identity = 88/172 (51.16%), Postives = 111/172 (64.53%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. Swiss-Prot
Match: sp|Q8L7S9|TRXY2_ARATH (Thioredoxin Y2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g43560 PE=2 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 4.6e-29 Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. Swiss-Prot
Match: sp|Q5JMR9|TRXY_ORYSJ (Thioredoxin Y, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0963400 PE=3 SV=2) HSP 1 Score: 122.1 bits (305), Expect = 5.6e-27 Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. Swiss-Prot
Match: sp|P52232|THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr0233 PE=1 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16 Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. Swiss-Prot
Match: sp|P0A4L1|THIO1_NOSS1 (Thioredoxin 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=trxA PE=3 SV=2) HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08 Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. TrEMBL
Match: tr|A0A0A0K7X7|A0A0A0K7X7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014850 PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 1.8e-75 Identity = 157/174 (90.23%), Postives = 158/174 (90.80%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. TrEMBL
Match: tr|A0A1S3CIC6|A0A1S3CIC6_CUCME (thioredoxin-like protein slr0233 OS=Cucumis melo OX=3656 GN=LOC103501315 PE=4 SV=1) HSP 1 Score: 269.2 bits (687), Expect = 5.7e-69 Identity = 147/174 (84.48%), Postives = 150/174 (86.21%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. TrEMBL
Match: tr|A0A2P6PRW6|A0A2P6PRW6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0275081 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 4.3e-40 Identity = 104/174 (59.77%), Postives = 117/174 (67.24%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. TrEMBL
Match: tr|A0A2I4GW82|A0A2I4GW82_9ROSI (thioredoxin Y1, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109011407 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39 Identity = 105/174 (60.34%), Postives = 119/174 (68.39%), Query Frame = 0
BLAST of CsGy6G002480.1 vs. TrEMBL
Match: tr|D7SRD7|D7SRD7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0072g00400 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 2.8e-39 Identity = 105/175 (60.00%), Postives = 118/175 (67.43%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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