CsGy6G000320.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy6G000320.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr6 : 259874 .. 260095 (+)
Sequence length222
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGTTCAAGGGAAACCTTGGAACTTTTATTATGATCCACAGAAAAGTTGGTGAACAATCGTCGCGACAACTGCAGCGTTGCAATGAACCGAGGGGAACGGTTCGATACGATTATCATGAGCATCAACGGTGTGAATTTCACGTCGGCTTCCTTAGCAACTTGAGCCAACAAGGAGGTTGCATCAATGAGAGGTTCAAATTGCTCAAGCCTTACTAA

mRNA sequence

ATGGAAAGGTTCAAGGGAAACCTTGGAACTTTTATTATGATCCACAGAAAAGTTGGTGAACAATCGTCGCGACAACTGCAGCGTTGCAATGAACCGAGGGGAACGGTTCGATACGATTATCATGAGCATCAACGGTGTGAATTTCACGTCGGCTTCCTTAGCAACTTGAGCCAACAAGGAGGTTGCATCAATGAGAGGTTCAAATTGCTCAAGCCTTACTAA

Coding sequence (CDS)

ATGGAAAGGTTCAAGGGAAACCTTGGAACTTTTATTATGATCCACAGAAAAGTTGGTGAACAATCGTCGCGACAACTGCAGCGTTGCAATGAACCGAGGGGAACGGTTCGATACGATTATCATGAGCATCAACGGTGTGAATTTCACGTCGGCTTCCTTAGCAACTTGAGCCAACAAGGAGGTTGCATCAATGAGAGGTTCAAATTGCTCAAGCCTTACTAA

Protein sequence

MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQGGCINERFKLLKPY
Homology
[Close]
BLAST of CsGy6G000320.1 vs. NCBI nr
Match: KGN45633.1 (hypothetical protein Csa_6G002280 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60
          MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG
Sbjct: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60

Query: 61 GCINERFKLLKPY 74
          GCINERFKLLKPY
Sbjct: 61 GCINERFKLLKPY 73

[Close]
BLAST of CsGy6G000320.1 vs. TrEMBL
Match: tr|A0A0A0K829|A0A0A0K829_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002280 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60
          MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG
Sbjct: 1  MERFKGNLGTFIMIHRKVGEQSSRQLQRCNEPRGTVRYDYHEHQRCEFHVGFLSNLSQQG 60

Query: 61 GCINERFKLLKPY 74
          GCINERFKLLKPY
Sbjct: 61 GCINERFKLLKPY 73

The following BLAST results are available for this feature:
BLAST of CsGy6G000320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45633.12.0e-36100.00hypothetical protein Csa_6G002280 [Cucumis sativus][more]
BLAST of CsGy6G000320.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G000320.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G000320.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K829|A0A0A0K829_CUCSA1.3e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002280 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy6G000320CsGy6G000320gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G000320.1.exon.1CsGy6G000320.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy6G000320.1.CDS.1CsGy6G000320.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy6G000320.1CsGy6G000320.1-proteinpolypeptide