CsGy5G010680.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy5G010680.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionDNA-directed RNA polymerase subunit beta
LocationChr5 : 11115090 .. 11122825 (+)
Sequence length396
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCAACGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCCAGGTTCACCAGGGTAAATGCATAAAAAAAGGGCAAATTTTAGCGGACGGTGCTGCTACAGTTGGTGGCGAACTTGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTTTGAAGATGCGGTACTAATTAGCGAGCGTTTGATATATGAAGATATTTATACTTCTTTCCACATACAGTCTGAGAAGCCCCTTGGTAAGAACATCATCAACCTGTTGGCTTGAAGGGATACACAGAATGCATATGCTTCCACTGTCAAGTTTTTCTTTAGTGAAATGCCAGTCAATCTCAGCATGTTTAGTTCTATCATATTGAACTGAGTTGTTAGCAATATTAATAGCGACTTTATTATCACAAAAAATCTTCACTGGTGTCTCACACTCTTGATGAAGATCATATAGGACTTTCTAGAGCCAAATTTCCTCACATATTTTCAAACTCATAGCTCAATATTCGACCTCATCGTTGCTCCTGGCCACAACACTTTGCTTCTTACTCCTCCAAGTTACAAAATTGCTCATACAAAAGTACAATAACCGAAGGTAGACTTGCTGTCAATAACAGATTCTGCCCAATCTGAGTCAGTATATGTCTTAATGGTCCTTCTATCTGTCTTTCTAGACACCAACCCTTTACCAAGTGTCATTTTCAAGTATCTCATAATTTTGTTGACAGCTTCCATGTGTTCCTCATAGAGAACCTGCAGAAACTGGCTGACAATACTCACAACAAAAGAAATATCAGAACGAGTATGGGTAAGTCAATCAATTTACCCACAAGGCGCTGATATTGTTCTTTATCAACTGGAACTTGATATTAGTGTTTCCTAGTTTACAGTTGAATTCGATAGGGGTGTCAGCAGGACAACATCCCAGCATACCTGTTCCGATCAGCAAATCAAGGGTGTATTTCGAAGATGCCTTTTCTAGATCTGGCCACCTCCATTCCAAGTAAATATTTCAGATTACCTAAATCCTTGATTTCAAATTCATCACCCATTCTCTGCTTTAGTGGACTGATTTCTGTTCGATCATCTCCAGACAAAAGAATGTCATCAACATATAGAACAACAATCTTCCCTACTTGGAAATCTTTGTAAATAAAATATGATCAGAATGTCCCCAACTGTACCATTGGGATCAAAATGTCCCCAACTGTACCCTTGGGACTTGACAAAAGTAGTGAACCTATCAAACCACGGTCTGAGTGACTGTTTTATACTATACATGGATTTTTGGAGTTTACAAATTCCTTCCCAAACTGGGCTTCAAATCCAGGGAGGGGGCTCATGTAGCTCTACTAGGTCTCCATTTAGAAAGGCAATTTTAACATCCAACTGGTATAGAGGCCAATCTTTATTAACAGTAACAAATAGTAGGGCTCCAACAATGTTTTAAGGTTTCTGAAAAATCAACACCATAGGTTTGAGTAAATCCCTTTGCAACTAACCTTGTCTTGTGTTTGTCGAGTATTCTAGAGGTGAAATCGGGTTGGGTTGGGTTGGGTTGGGAGACATTCTCAACCCAACCCATATTTTCGGGTTATTTGGGTTGGCAACCTGAATAACCCGAATTTAGTTTCTAACCCAACCCAACCAAACCCGTAAAATATGGGTTGGGTTGGGTTGTCGGGTTGTGTATATAATTTTTTTTAATTTTCTTTTTCCCGTTTTCTAATTTCTAATGATTATAAAAGTTTGAAATTGTTACATTTAAATTTCAAACATACATAATTCAAACTTTCATACAATAAATCCAAGATTTATATACCTTTAATTTGTTTTTTTATTAAAATAATATATATATATATTTATTTATTTATATATTATATTAATTCGGGTTGGGTTGGGTTGAACCGAATTTTTCAACCCTCCAACCCGAGACCCAACCCAACCCGAAAAAATCAATTTTTTTTAACCCAACTCAATCCATATTTTAACCTAACCCAACCCAACCCTTATAATATGGGTTGGGTAGTCCGGGTTATTCGGGTTCAACCCATATTTGTACACCCCTAAAGTATTCCATCGTGAACACCCATTTGCATCCCACAGTTTTGTGTCCCTTGGGTAGAGCACAAATCTGCCATGTTTTATTTTCATGATAGCCTTCTACCATTCAGGACTTTCTAAAGTAGGATATTTTTCAGTATTATGGTAGAGTCAAGGCTTGCTGTAAAAGCTTTGAACAGTGGAGAGAGATTATCGTAGGAAACATAGTTACAATTGGTTTCCTACTATTCTTCTCATTATCATGGGTCGAGAATCGGGCATTAAAGGCAACTGAGTTAGTTATATAATTTGAATGCACATTAGGAAGCAAAGTGGTAGGTTCTTTGAATACATCAGTAGATCGATCGATTTAGACTGTGTCAAGCATTCACCAACTTCAAAACCAGATCTGCTGTAGATTTGGTTAATTCTGGGACCACAAAAATATGGCTGCTATAAAAGGTTAAATGACAGGCACGTGGAGAGAAAGATTTGATGGCTGTCCATAACCGAAGGGTGCCAGCAGCGTATAAGGCTACAGATGATCAGAAGGGTTCGATAGTTGGATGAGCAACGACGCGTAGAAGCAGCTGGGCTGGGCGGTGAGATGAACGGACGGCAACCCGTGGCCAACTCAAATAACTGAAGTCCTTGAACTTTGCTTGATCGCCTAGTCCAACTCAAATAACTTAACACAAAACATGAAACATAATTATTAGGCGAAAAGAAATATAGTGTAAGATATCAAACAACTCCTTTTTATTACTTCAAATCAGTAGTTCCAAATATACATGATACATACTTCTAAGTACATGAACTATAAAATAAAGCTTAAACGCCTTGCGCGACCTCCCAACTTTAAATGCCTTGCTAACACCTCACTAGCAGCTTGCCTTACCCTTCTTAACTTGGCCTTAACGCCTTGTAACCTTGGGAAGAGAAACTTAAAACACAAGTCAAATACTTGGTGCGTGATGTTTTAAGCCCTTTGGGCATACAATACGTAAAATTATTTTCATAAAACAGGCCTGAACGCCTCATTCAATAAATCATAAATCATACATTAGCCTTTCATATTCCTTTCGCCAAAAACTTGAACCATTCCAACGCATAGACTACTATGATGGCCTTTCCATTAACAGCATACCTTGGAGAATTTTCTGGTTCATTTCCCGTTGCTCAAGCCACTTAAACCAATACACTCCTTTTACGCATTGGCTGGCTTCATTCTACCATGCAGTCATTTTCTACATAGTTGCCTTTACTCACTATATGCACATAATTAGTTAGCTCATTGATAGAAATAAGACTAATGGTTACTCCCAAACATACATACAATCATCGAACGTAAAACTTTACTTGAAACATAACATAAGCTTCCTTTTAAAATCATTCCTCTAAAAACCATTAATGTTAAACAATATTAAAAGACAACATGAAACATAGGAAGAAAGCTTTCAAATCTTTATTCAACTATAGAAGATCACTCACTACACTAAATTCTCTTCTTCTTTCTGAACACCTAACCCTTCTCACCTAATAGCTTCTTAACATCACAACACTTAGCTCTTTCCCTCGGTAAAACCTCATAATCACCTCCTTCTCTTCTATCTTCTTCTCCTATTTATACTAATCCTAGGTTGGATTAGTCACCCCTTAAGCTTCCTTAATTTGTCAGCTCCTGCTTGGAGTATTACATGTGTAAGCTTAATAAATTTTCAAACCATGCTTAGTTTAAAACCTTACATGTGACCTACTAATTAAGCACAAATAGGAAATTTTCCTCGAAAATACTTTATTAATATTTTATTTATACTTGAGATCACAATAGATAGGTCATCAATTTTCACCTAGGAAAAATATAACAAAATAAACAAAATCTCGTAAAAATGAAGGAAAGATTGATTTTAAACAAAGAATAGAAAAAAGATGATTAAAAAGATGATTTAATAATAATTATTATTTATTAAATAAAAATTATCATTAAAAGAAACTCCAGAACAAAAGAAAATAGAAGAATGAAAAAGTGCTTATCATAAATAAAATGTGTATTTGGAATGACTTAGAAAAAAAAAATTCAAAAATTCATTTTTATTAATTTTTCAAGGTTTGCGAGGATTGCCGCAGTTGGTGGCCGGAAGTTTGATGGTCATTGGGGTGGTGTACAGAGTTGACCGACGAATTTTCTAGATTGAATTAGAAAAAAATAGGTAATCCTGGGCAAGAATAGTGTTTACTATTCAAACCCATAGGAAAGAGTGTAGGAAGCCTTGGTGAAGATGGTCGTTGATCAATGGTGAATACGGTCAACAATTGCCAACGTTTAAGACAATTAGTTGGTCGCTGACCATCATGACAATCGATCGCCAAGGGTCATGGCTATTGGTCATTGACCATCACTACAACCGTTTGTTAATAGGCATGACATCGATAATTAATACTCTCTTTTCATTATATCAATGAAAAACCTCATTTCAGGGAAAAGGTAAAAAAAATCTTCTTCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCCCTCCTCCCTCCTCCCTCCTCCCTCCTCCTACACCATTCTCCTTGGTTCAGCCAAGCCTCTCCGACCAGCCCCTCAACATGGAAGTTGCTAGCTGCAAAGTTAATCAATCTCATTACTATATTTGGAAGGAGAAAGAAGACTTTATTATTGAAGATGTGGAAGCTAAAAAATCCATTTCAATCTCCGAAGCTCAACTCCAATGGACTTTGCACACTATTTCAACTCTCCTCAATAATCCAGTAGACCACTTCTTCAAGAAAGATGGTGAAATTGACAGAGGACAAATGAAAATCTTCAAGTTCCAAGCCAACTCGGAGTGGATCCTCAGCTGTGACATTTGGCCTTATTCAGGACGTAGTTTTACCCTTAGAATATGCTCCGGAATCAATATACAAGGTTGGTCCTCCTTCTGTAGAATGCTGGATAAGTATGTAAACATAGTAGATTACTCCCATTGGTTCTCAATCATTTCTGCTAAAGCTCCCTTCCAACCTTCAATGGAAAAACAAAGTCATGCTGCTACCGTTAAATCCGAAAGCTCCAACCATTCAGTACCTAAATCTGGAAAAATGGAACCATGCTCGGATTCCATCTATCAAGATATTTCTCAGGGCTCAGTTCGTCATTCCCCTTCTATCAAAAAACAATGGTTAATTAAAAACCATGAGGTGGCTAAGCTAAACTACTATCTCTAGAGGAGGAAGGCAAACTTTATACAATGTTATCTTGGCCAGCCTCCCAACCTACTATCTGTCTTTGTTCCTTATTCTAGCTCATGTGGCAACTTCATTGGAAAAAATCATGAGGAACTTCTTTTGGGAAGGATTTGCAGGTGGCAAGATCAATCGTCTAGTAAAATGGAGCTTGGTTTCCCTTCCTTTAAAAGATGGAGGTCTCGGTCTAAGGGGCATTAAAACCTAAAATTCAGCTTTGCTTGGTAAGTGGGGCCGGAGATATTCTAAGGAAGATTCAGCTTTATGGAGGAAAATTATTTGTAGTATCCATGGTAAAGATACATTTGATTGGTTCACTTTGGAAAAATCTGGAAATAGCCTAAGGAGCCCTTGGGTTAACATTTCTAGAATGTGGAGGCTAGTGGAGCATTTATAGCTCACCTTAAACTTGGCAGTGGCAGCAAAATTGGTTTTTGGAGAGATATCTGGGTCAGTCCTCTACTCTAAAGGAACTTTTTCCTCTGCTTTTCAGAATTGCTTTATTACCACAAGGCTCAGTTGTTGATCATTGAGATCATTCTACCCTCTCTTGGTCCCTCTCCTTTAGAAGAAGCTTGAATGAAGAGGAAATAGTAGCCTTTGGTTCCTTATTAGCTCTTCTTGCGCTAGAAAAAGTGTTTGATTTTGATGAGTCCAAGGTTTGGTCAATTGGACAGCAAGGTAGATTCTCTGTTAAATCTCTCTCAGCCCACTTAAATTCTGCCTCCCCGATGGATAAAAAACTCTTCAAAGCCTTATGGAAATCAAGCTGCCCTCAGCGAGTGAACATTCTGATGTGGATCATGTTTTTCGGGTCCCTAAATTGTGCAGAAATTCTTCAAAAGAAATCCCCAAGCAGATGCCTCCAGCCTTCGGTTTGCCCTCTCTGTATGAATGCTAATGAGTCATTGCTTCATCTCTTCCTACTTTGCCCCTTTTCCTCTGTTTGTTGGAATAGTTTCTTCTCCATCTTTGATATTGCTTGAGTATTCGACGCCTCCCTCAACTCCTCAGTGCTTCAGCTATTGGAGGGTCCACCTCTTCCTTATAAGCCTCGGCTAATTTGGTTAAATCTATTAAAAGCTCATAGATCTTTTAGCGGAATTGTGGTTTGAACATAATCAGCGGATTTTTCAAGACAAGAAAAGATCAAGCCTAGAAATTTTCAATTCAGTGCAATGTAATGCAGCAACTTGGTGCTCTCTAAACAAGATTTTTGCAAATTACTCCACACAAGACCTTTGTCTCAATTGGACAGTTTTGCTATCTCAGTCAGCTTCCTAGGACTACTTCTCAGTAGTATCTTAGTTGTACTAATAAGGCTCACTTGTTTTCTGGCCTTTTTTCTTTTCTAGTTTTCGATGATTTTTTAGTTTTGATGTATTGGCTAGATTCTACTCTCATTGTAATAGGTTGAATTTTGTTCTCATTGTTGCAATAGGCTAGTTTTAATGGGATATGATGTTTTGGTGCTAAACGGGTGTCAACCTAGTTGAAATGTTCGGGTGCACCTTCTGATCCCTATTATTCTTCTTCTTTCGCTTGTTTGGACTTCTTTATTTAGCTCATTGTATAATTCTCTTGTACATTGAGTTCTTACTATTAATAAAGAAGTTTGTCTCTGTTTCAAAAAAGATAATTAATGATAAAGATTGCTCACCGTCGATCAAGATGTTCACCCGACGACAGTAACGTCCAAAGGTGTAGGTCACCAACGATCAAGTTGATTGGTCATCGATGATCAAGACAATCCGAAGCCTACGGTTAAGACGATTGGTCGTTGTGACCGTCGATCATTATGGTTGATCGTGAAGTTGGCTAACGTTTGTTGCCAACGGTCATCAATGATCATTGATAAGAGGCTGAAGTGAAAATGTTTCTAAAACATATGAAATTCAATTAAAAAAAAACATATTCCAAACCCATGTTTGGTTTCTTAATCCCAGGAATTTTAATCGAAGTGTCCAAACATGGGTTTGGCTTCAAATGCCTAACCCCCTAATTCCAAACTCATGGGCCAAACACCACCTAAATACAACTTAAATCTCAGCAAAACTGCGACCCACGAGCAAAGAGTCATGAACAACCAAGACAAATCTGAACGATAGAGCATTTGAGTAAAACGGAGGCTATGGGCGTCGGTGGTTATGGATTGTCGACGTGAGGCAGTGGCAAATCTGGGTTATACAGAGACTATGGGTTGTGGATGGCCAGATTTGGGCAGAGCGCAAACGGGTATGAGCTGATCAGATGTGCAATCTGATGCTATAGATATGATTGACAGTATGTACTGTGCAAAGTGGCTAGGCGCAAATCTAGGGCAAGGAGTCATGAAGTTAGGCAGGGGAAGCACCTAGGGGCATATTTGGGCGACAACAGATGCAAATTCAAGCTGCAGGAGACAAAATGCAGCAACAGATCTAGTCACTGA

mRNA sequence

ATGTATCAACGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCCAGGTTCACCAGGGTAAATGCATAAAAAAAGGGCAAATTTTAGCGGACGGTGCTGCTACAGTTGGTGGCGAACTTGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTTTGAAGATGCGTGGCAAATCTGGGTTATACAGAGACTATGGGTTGTGGATGGCCAGATTTGGGCAGAGCGCAAACGGTATGTACTGTGCAAAGTGGCTAGGCGCAAATCTAGGGCAAGGAGTCATGAAGTTAGGCAGGGGAAGCACCTAGGGGCATATTTGGGCGACAACAGATGCAAATTCAAGCTGCAGGAGACAAAATGCAGCAACAGATCTAGTCACTGA

Coding sequence (CDS)

ATGTATCAACGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCCAGGTTCACCAGGGTAAATGCATAAAAAAAGGGCAAATTTTAGCGGACGGTGCTGCTACAGTTGGTGGCGAACTTGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTTTGAAGATGCGTGGCAAATCTGGGTTATACAGAGACTATGGGTTGTGGATGGCCAGATTTGGGCAGAGCGCAAACGGTATGTACTGTGCAAAGTGGCTAGGCGCAAATCTAGGGCAAGGAGTCATGAAGTTAGGCAGGGGAAGCACCTAGGGGCATATTTGGGCGACAACAGATGCAAATTCAAGCTGCAGGAGACAAAATGCAGCAACAGATCTAGTCACTGA

Protein sequence

MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAWQIWVIQRLWVVDGQIWAERKRYVLCKVARRKSRARSHEVRQGKHLGAYLGDNRCKFKLQETKCSNRSSH
Homology
[Close]
BLAST of CsGy5G010680.1 vs. NCBI nr
Match: YP_009004036.1 (RNA polymerase beta subunit [Cucumis hystrix] >Q4VZP1.2 RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta; Short=RNA polymerase subunit beta >AAZ94643.1 RNA polymerase beta subunit (chloroplast) [Cucumis sativus] >ABI97409.1 RNA polymerase beta subunit (chloroplast) [Cucumis sativus] >ABI98737.1 RNA polymerase beta subunit (chloroplast) [Cucumis sativus] >AHJ61378.1 RNA polymerase beta subunit (plastid) [Cucumis hystrix] >ALF03293.1 RNA polymerase beta subunit (chloroplast) [Cucumis sativus var. hardwickii] >ANF28369.1 RNA polymerase beta subunit (chloroplast) [Cucumis sativus var. hardwickii] >ARQ16070.1 RNA polymerase beta subunit (chloroplast) [Cucumis sativus] >ARQ16153.1 RNA polymerase beta subunit (chloroplast) [Cucumis sativus] >ARQ16236.1 RNA polymerase beta subunit (chloroplast) [Cucumis sativus] >ARQ16319.1 RNA polymerase beta subunit (chloroplast) [Cucumis sativus] >ASY97474.1 RNA polymerase beta subunit (chloroplast) [Cucumis sativus var. hardwickii] >AVE15323.1 RpoB (chloroplast) [Cucumis sativus var. sativus])

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 610 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 669

Query: 61  A 62
           A
Sbjct: 670 A 670

[Close]
BLAST of CsGy5G010680.1 vs. NCBI nr
Match: YP_009346477.1 (RNA polymerase beta subunit (chloroplast) [Cucumis x hytivus] >AOW71087.1 RNA polymerase beta subunit (chloroplast) [Cucumis x hytivus])

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 610 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 669

Query: 61  A 62
           A
Sbjct: 670 A 670

[Close]
BLAST of CsGy5G010680.1 vs. NCBI nr
Match: YP_247591.1 (RNA polymerase beta subunit [Cucumis sativus] >CAJ00750.1 RNA polymerase beta chain (chloroplast) [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 610 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 669

Query: 61  A 62
           A
Sbjct: 670 A 670

[Close]
BLAST of CsGy5G010680.1 vs. NCBI nr
Match: YP_009439970.1 (RNA polymerase beta subunit (chloroplast) [Gynostemma pentagynum] >ATG86805.1 RNA polymerase beta subunit (chloroplast) [Gynostemma pentagynum])

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 607 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 666

Query: 61  A 62
           A
Sbjct: 667 A 667

[Close]
BLAST of CsGy5G010680.1 vs. NCBI nr
Match: YP_004841775.1 (RNA polymerase beta subunit [Cucumis melo subsp. melo] >AEM76884.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo subsp. melo] >ASY96343.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo subsp. agrestis] >ASY96430.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo subsp. agrestis] >ASY96517.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo subsp. agrestis] >ASY96604.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo var. conomon] >ASY96691.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo var. makuwa] >ASY96778.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo var. momordica] >ASY96865.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo var. dudaim] >ASY96952.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo var. cantalupo] >ASY97039.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo var. cantalupo] >ASY97126.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo var. inodorus] >ASY97213.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo var. cantalupo] >ASY97300.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo var. flexuosus] >ASY97387.1 RNA polymerase beta subunit (chloroplast) [Cucumis melo var. flexuosus])

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 610 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 669

Query: 61  A 62
           A
Sbjct: 670 A 670

[Close]
BLAST of CsGy5G010680.1 vs. TAIR10
Match: ATCG00190.1 (RNA polymerase subunit beta)

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-27
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFED
Sbjct: 612 MYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFED 671

Query: 61  A 62
           A
Sbjct: 672 A 672

[Close]
BLAST of CsGy5G010680.1 vs. Swiss-Prot
Match: sp|Q4VZP1|RPOB_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 6.5e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 610 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 669

Query: 61  A 62
           A
Sbjct: 670 A 670

[Close]
BLAST of CsGy5G010680.1 vs. Swiss-Prot
Match: sp|A4QJJ1|RPOB_AETGR (DNA-directed RNA polymerase subunit beta OS=Aethionema grandiflorum OX=72657 GN=rpoB PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.9e-27
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCM QKSQV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFED
Sbjct: 613 MYQRSNKNTCMHQKSQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFED 672

Query: 61  A 62
           A
Sbjct: 673 A 673

[Close]
BLAST of CsGy5G010680.1 vs. Swiss-Prot
Match: sp|A4QK10|RPOB_ARAHI (DNA-directed RNA polymerase subunit beta OS=Arabis hirsuta OX=78191 GN=rpoB PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-26
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFED
Sbjct: 612 MYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFED 671

Query: 61  A 62
           A
Sbjct: 672 A 672

[Close]
BLAST of CsGy5G010680.1 vs. Swiss-Prot
Match: sp|P50546|RPOB_ARATH (DNA-directed RNA polymerase subunit beta OS=Arabidopsis thaliana OX=3702 GN=rpoB PE=3 SV=4)

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-26
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFED
Sbjct: 612 MYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFED 671

Query: 61  A 62
           A
Sbjct: 672 A 672

[Close]
BLAST of CsGy5G010680.1 vs. Swiss-Prot
Match: sp|A4QKI4|RPOB_CAPBU (DNA-directed RNA polymerase subunit beta OS=Capsella bursa-pastoris OX=3719 GN=rpoB PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-26
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFED
Sbjct: 612 MYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFED 671

Query: 61  A 62
           A
Sbjct: 672 A 672

[Close]
BLAST of CsGy5G010680.1 vs. TrEMBL
Match: tr|A0A249RXK2|A0A249RXK2_CUCME (DNA-directed RNA polymerase subunit beta OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoB PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 610 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 669

Query: 61  A 62
           A
Sbjct: 670 A 670

[Close]
BLAST of CsGy5G010680.1 vs. TrEMBL
Match: tr|A0A286NFR1|A0A286NFR1_CUCME (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoB PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 610 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 669

Query: 61  A 62
           A
Sbjct: 670 A 670

[Close]
BLAST of CsGy5G010680.1 vs. TrEMBL
Match: tr|A0A218KG28|A0A218KG28_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoB PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 610 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 669

Query: 61  A 62
           A
Sbjct: 670 A 670

[Close]
BLAST of CsGy5G010680.1 vs. TrEMBL
Match: tr|G3ETX7|G3ETX7_CUCME (DNA-directed RNA polymerase subunit beta OS=Cucumis melo subsp. melo OX=412675 GN=rpoB PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 610 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 669

Query: 61  A 62
           A
Sbjct: 670 A 670

[Close]
BLAST of CsGy5G010680.1 vs. TrEMBL
Match: tr|A0A1X9Q1B9|A0A1X9Q1B9_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 60
           MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED
Sbjct: 610 MYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFED 669

Query: 61  A 62
           A
Sbjct: 670 A 670

The following BLAST results are available for this feature:
BLAST of CsGy5G010680.1 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009004036.12.0e-26100.00RNA polymerase beta subunit [Cucumis hystrix] >Q4VZP1.2 RecName: Full=DNA-direct... [more]
YP_009346477.12.0e-26100.00RNA polymerase beta subunit (chloroplast) [Cucumis x hytivus] >AOW71087.1 RNA po... [more]
YP_247591.12.0e-26100.00RNA polymerase beta subunit [Cucumis sativus] >CAJ00750.1 RNA polymerase beta ch... [more]
YP_009439970.12.0e-26100.00RNA polymerase beta subunit (chloroplast) [Gynostemma pentagynum] >ATG86805.1 RN... [more]
YP_004841775.12.0e-26100.00RNA polymerase beta subunit [Cucumis melo subsp. melo] >AEM76884.1 RNA polymeras... [more]
BLAST of CsGy5G010680.1 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00190.11.7e-2791.80RNA polymerase subunit beta[more]
BLAST of CsGy5G010680.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q4VZP1|RPOB_CUCSA6.5e-29100.00DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
sp|A4QJJ1|RPOB_AETGR7.9e-2793.44DNA-directed RNA polymerase subunit beta OS=Aethionema grandiflorum OX=72657 GN=... [more]
sp|A4QK10|RPOB_ARAHI3.0e-2691.80DNA-directed RNA polymerase subunit beta OS=Arabis hirsuta OX=78191 GN=rpoB PE=3... [more]
sp|P50546|RPOB_ARATH3.0e-2691.80DNA-directed RNA polymerase subunit beta OS=Arabidopsis thaliana OX=3702 GN=rpoB... [more]
sp|A4QKI4|RPOB_CAPBU3.0e-2691.80DNA-directed RNA polymerase subunit beta OS=Capsella bursa-pastoris OX=3719 GN=r... [more]
BLAST of CsGy5G010680.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A249RXK2|A0A249RXK2_CUCME1.3e-26100.00DNA-directed RNA polymerase subunit beta OS=Cucumis melo subsp. agrestis OX=2176... [more]
tr|A0A286NFR1|A0A286NFR1_CUCME1.3e-26100.00DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. flexuosus OX=11207... [more]
tr|A0A218KG28|A0A218KG28_CUCSA1.3e-26100.00DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=3... [more]
tr|G3ETX7|G3ETX7_CUCME1.3e-26100.00DNA-directed RNA polymerase subunit beta OS=Cucumis melo subsp. melo OX=412675 G... [more]
tr|A0A1X9Q1B9|A0A1X9Q1B9_CUCSA1.3e-26100.00DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0032549ribonucleoside binding
GO:0003899DNA-directed RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR015712DNA-dir_RNA_pol_su2
IPR007120DNA-dir_RNAP_su2_dom
IPR037033DNA-dir_RNAP_su2_hyb_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy5G010680CsGy5G010680gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy5G010680.1CsGy5G010680.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy5G010680.1.exon.1CsGy5G010680.1.exon.1exon
CsGy5G010680.1.exon.2CsGy5G010680.1.exon.2exon
CsGy5G010680.1.exon.3CsGy5G010680.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy5G010680.1.CDS.1CsGy5G010680.1.CDS.1CDS
CsGy5G010680.1.CDS.2CsGy5G010680.1.CDS.2CDS
CsGy5G010680.1.CDS.3CsGy5G010680.1.CDS.3CDS


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3DG3DSA:2.40.270.10coord: 40..96
e-value: 1.6E-6
score: 30.0
NoneNo IPR availableGENE3DG3DSA:2.40.50.100coord: 1..39
e-value: 1.2E-15
score: 59.0
NoneNo IPR availablePANTHERPTHR20856:SF20DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 7..64
NoneNo IPR availableSUPERFAMILYSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..62
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 2..62
e-value: 7.9E-19
score: 67.9
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 7..64