CsGy5G005130.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G005130.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	60S ribosomal protein L13
Location	Chr5 : 3283587 .. 3284823 (-)
Sequence length	621

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCACAACAATGTTATCCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTTAGAACTTGGTTCAACCAGCCTGCTCGCAAAACAAGGCGAAGGAATGGTGAGTGTCTTGGTTTTTTGCTAGTTCATCCATGATTTAATTTGCCTTGTTTTGTTATTATAGGTTTTGATTTTTCTTGTGTAAATGGTCACTAGCTCGTCAAGAAAAGGCTGTGAAAGCTTTCCCTCGGCCTACCGCTGGACCACTTCGACCTATAGTCCATGGACAGACGTTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGTGGGATTATTTCCAATTTTTCGAGTTTTTTTCATGATCTGCATATATAACTCAGTTTATGTTTGTTTTGTTTTATATTTGGACGAGTAAAATATTGATGAGCATGCTCATTCTTTTTCACGTATGAATGAACAGTAGCTTCATATATTAAACTCTTCGCCTGTGCTCTAGTTTTCTACTTGGTAAAATTGTTGCTTTTGGAAGTCTTTTGTGAATGATATGGAGTAGAAATATTTGATATATTTGTACGGTTGTGAACGTCTAAGAATGATGTTGTTTTCAGAGTGTAGAATTACATTATGAATTCAAGAGCACACTTGAATGTTTAATGATTTTTTGGATTCTATTGAGGTTGTTCCTCGGTTGATACTCTTCAAGAGAATTGACAAATGTTTTATAAAACCAGGCAGCTGGCATTCCAAAGAAATATGCACCAACTATTGGCATTGCAGTTGATCACCGCCGCAGAAACCGCTCCTTGGAGAGTCTTCAAGCTAATGTACAGAGGTTGAAGACCTACAAGGCCAAGGTGGTCGTCTTCCCACGACGTGCCCGCAAGTTCAAGGTACCTTTGCTAAGTTTCTATTCCCAAAGAAATACAATTAATTTGTTGCACCATCTTTTGTGTTTATGGAATGCCCCTGATCTCTAAGCATCATTTACATTACTTGTTAATTTAGGCTGGTGATTCTACTCCTGAGGAACTAGCAACTGCCACCCAAGTCCAAGGCTCTTACATGCCTATTGGATTAGAGAAGCCATCAGTAGAGCTTGTGAAGATTACAGAAGACATGAAGTCTTTCAAGGCTTATGACAAGCTTCGTGTTGAGCGAGCAAATGCCCGTCATGTTGGTGCTCGGTTGAAGAAGGCTGCTGAGGCAGAGAAGGAAGAGAAGAAGTAA

mRNA sequence

ATGAAGCACAACAATGTTATCCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTTAGAACTTGGTTCAACCAGCCTGCTCGCAAAACAAGGCGAAGGAATGCTCGTCAAGAAAAGGCTGTGAAAGCTTTCCCTCGGCCTACCGCTGGACCACTTCGACCTATAGTCCATGGACAGACGTTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGCAGCTGGCATTCCAAAGAAATATGCACCAACTATTGGCATTGCAGTTGATCACCGCCGCAGAAACCGCTCCTTGGAGAGTCTTCAAGCTAATGTACAGAGGTTGAAGACCTACAAGGCCAAGGTGGTCGTCTTCCCACGACGTGCCCGCAAGTTCAAGGCTGGTGATTCTACTCCTGAGGAACTAGCAACTGCCACCCAAGTCCAAGGCTCTTACATGCCTATTGGATTAGAGAAGCCATCAGTAGAGCTTGTGAAGATTACAGAAGACATGAAGTCTTTCAAGGCTTATGACAAGCTTCGTGTTGAGCGAGCAAATGCCCGTCATGTTGGTGCTCGGTTGAAGAAGGCTGCTGAGGCAGAGAAGGAAGAGAAGAAGTAA

Coding sequence (CDS)

ATGAAGCACAACAATGTTATCCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTTAGAACTTGGTTCAACCAGCCTGCTCGCAAAACAAGGCGAAGGAATGCTCGTCAAGAAAAGGCTGTGAAAGCTTTCCCTCGGCCTACCGCTGGACCACTTCGACCTATAGTCCATGGACAGACGTTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGCAGCTGGCATTCCAAAGAAATATGCACCAACTATTGGCATTGCAGTTGATCACCGCCGCAGAAACCGCTCCTTGGAGAGTCTTCAAGCTAATGTACAGAGGTTGAAGACCTACAAGGCCAAGGTGGTCGTCTTCCCACGACGTGCCCGCAAGTTCAAGGCTGGTGATTCTACTCCTGAGGAACTAGCAACTGCCACCCAAGTCCAAGGCTCTTACATGCCTATTGGATTAGAGAAGCCATCAGTAGAGCTTGTGAAGATTACAGAAGACATGAAGTCTTTCAAGGCTTATGACAAGCTTCGTGTTGAGCGAGCAAATGCCCGTCATGTTGGTGCTCGGTTGAAGAAGGCTGCTGAGGCAGAGAAGGAAGAGAAGAAGTAA

Protein sequence

MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKLRVERANARHVGARLKKAAEAEKEEKK

Homology

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BLAST of CsGy5G005130.1 vs. NCBI nr
Match: XP_004143667.1 (PREDICTED: 60S ribosomal protein L13-3-like [Cucumis sativus] >KGN50340.1 hypothetical protein Csa_5G168780 [Cucumis sativus])

HSP 1 Score: 402.9 bits (1034), Expect = 6.5e-109
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVERANARHVGARLKKAAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

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BLAST of CsGy5G005130.1 vs. NCBI nr
Match: XP_008467320.1 (PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo])

HSP 1 Score: 402.5 bits (1033), Expect = 8.5e-109
Identity = 205/206 (99.51%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVK+TEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVERANARHVGARLKKAAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

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BLAST of CsGy5G005130.1 vs. NCBI nr
Match: XP_022995473.1 (60S ribosomal protein L13-3-like [Cucurbita maxima] >XP_023532397.1 60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.7 bits (1005), Expect = 1.5e-105
Identity = 199/206 (96.60%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEK  VELVK+TE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKAPVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEEKK 206

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BLAST of CsGy5G005130.1 vs. NCBI nr
Match: XP_022929155.1 (60S ribosomal protein L13-3-like [Cucurbita moschata])

HSP 1 Score: 391.3 bits (1004), Expect = 2.0e-105
Identity = 199/206 (96.60%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YM IGLEKPSVELVKITED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of CsGy5G005130.1 vs. NCBI nr
Match: XP_023550831.1 (60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 390.6 bits (1002), Expect = 3.4e-105
Identity = 198/206 (96.12%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YM IGLEKPSVELVKITED+KSFKAYDK+
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

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BLAST of CsGy5G005130.1 vs. TAIR10
Match: AT3G49010.1 (breast basic conserved 1)

HSP 1 Score: 345.5 bits (885), Expect = 2.2e-95
Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG Y+PI  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

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BLAST of CsGy5G005130.1 vs. TAIR10
Match: AT5G23900.1 (Ribosomal protein L13e family protein)

HSP 1 Score: 342.8 bits (878), Expect = 1.5e-94
Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKK APTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELA ATQVQG YMPI   K ++ELVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER NARH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of CsGy5G005130.1 vs. TAIR10
Match: AT3G48960.1 (Ribosomal protein L13e family protein)

HSP 1 Score: 301.6 bits (771), Expect = 3.7e-82
Identity = 152/206 (73.79%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+K W+NYV+T FNQPA KTRRR ARQ KAVK FPRPTAGP+RP+VH Q
Sbjct: 1   MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TL YNMKVRAG+GF+LEELKAAGIPKK APTIGI+VDH R+NRSLE  Q NVQRLKTYKA
Sbjct: 61  TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPR AR  K GDS  +ELA ATQVQ  +MPI  E P++ELVK+T DMK F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+E  N RH G R K+AAEAEKEEKK
Sbjct: 181 RLEGINKRHAGVRAKRAAEAEKEEKK 206

[Close]

BLAST of CsGy5G005130.1 vs. Swiss-Prot
Match: sp|P41127|RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.0e-94
Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG Y+PI  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of CsGy5G005130.1 vs. Swiss-Prot
Match: sp|Q9FF90|RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 2.6e-93
Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKK APTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELA ATQVQG YMPI   K ++ELVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER NARH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of CsGy5G005130.1 vs. Swiss-Prot
Match: sp|P41128|RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-91
Identity = 167/206 (81.07%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELK+AGIPKK APTIGIAVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELA ATQVQG YMPI  EK + ELVK+T +MKS KA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of CsGy5G005130.1 vs. Swiss-Prot
Match: sp|P41129|RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-91
Identity = 166/206 (80.58%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGI++DHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELA ATQVQG YMPI  EK ++ELVK+T +MKS  AYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of CsGy5G005130.1 vs. Swiss-Prot
Match: sp|Q9SMT4|RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.7e-81
Identity = 152/206 (73.79%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+K W+NYV+T FNQPA KTRRR ARQ KAVK FPRPTAGP+RP+VH Q
Sbjct: 1   MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TL YNMKVRAG+GF+LEELKAAGIPKK APTIGI+VDH R+NRSLE  Q NVQRLKTYKA
Sbjct: 61  TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPR AR  K GDS  +ELA ATQVQ  +MPI  E P++ELVK+T DMK F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+E  N RH G R K+AAEAEKEEKK
Sbjct: 181 RLEGINKRHAGVRAKRAAEAEKEEKK 206

[Close]

BLAST of CsGy5G005130.1 vs. TrEMBL
Match: tr|A0A0A0KKX2|A0A0A0KKX2_CUCSA (60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 4.3e-109
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVERANARHVGARLKKAAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of CsGy5G005130.1 vs. TrEMBL
Match: tr|A0A1S3CTG8|A0A1S3CTG8_CUCME (60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 5.6e-109
Identity = 205/206 (99.51%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVK+TEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVERANARHVGARLKKAAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of CsGy5G005130.1 vs. TrEMBL
Match: tr|A0A1S3BWP2|A0A1S3BWP2_CUCME (60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103494439 PE=3 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 3.5e-103
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKK APTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELA ATQVQG Y+PIG EK SVELVK+TEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVER NARHVGARLKKAAEAEKE+KK
Sbjct: 181 RVERMNARHVGARLKKAAEAEKEDKK 206

[Close]

BLAST of CsGy5G005130.1 vs. TrEMBL
Match: tr|A0A0A0KU76|A0A0A0KU76_CUCSA (60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_4G025200 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 3.9e-102
Identity = 192/206 (93.20%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKK APTIGI+VDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELA ATQVQG Y+PIG EK SVELVK+TE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVER NARHVGARLK+AAEAEKE+KK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEDKK 206

[Close]

BLAST of CsGy5G005130.1 vs. TrEMBL
Match: tr|A0A067L2X8|A0A067L2X8_JATCU (60S ribosomal protein L13 OS=Jatropha curcas OX=180498 GN=JCGZ_05012 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 4.5e-98
Identity = 181/206 (87.86%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNV+P+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVVPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGF+LEELKAAGIPKK APTIGI+VDHRR+NRSLE LQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+VVFPRRARKFKAGDS PEELATATQVQG Y+PI  E+PS+ELVK+TE+MKSFKAYDKL
Sbjct: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGEYLPIARERPSIELVKVTEEMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVER N RH+GARLKKAAEAEKEEKK
Sbjct: 181 RVERMNTRHIGARLKKAAEAEKEEKK 206

The following BLAST results are available for this feature:

BLAST of CsGy5G005130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143667.1	6.5e-109	100.00	PREDICTED: 60S ribosomal protein L13-3-like [Cucumis sativus] >KGN50340.1 hypoth...	[more]
XP_008467320.1	8.5e-109	99.51	PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo]	[more]
XP_022995473.1	1.5e-105	96.60	60S ribosomal protein L13-3-like [Cucurbita maxima] >XP_023532397.1 60S ribosoma...	[more]
XP_022929155.1	2.0e-105	96.60	60S ribosomal protein L13-3-like [Cucurbita moschata]	[more]
XP_023550831.1	3.4e-105	96.12	60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy5G005130.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49010.1	2.2e-95	82.04	breast basic conserved 1	[more]
AT5G23900.1	1.5e-94	82.04	Ribosomal protein L13e family protein	[more]
AT3G48960.1	3.7e-82	73.79	Ribosomal protein L13e family protein	[more]

BLAST of CsGy5G005130.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P41127\|RL131_ARATH	4.0e-94	82.04	60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1	[more]
sp\|Q9FF90\|RL133_ARATH	2.6e-93	82.04	60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1	[more]
sp\|P41128\|RL131_BRANA	1.1e-91	81.07	60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
sp\|P41129\|RL132_BRANA	1.4e-91	80.58	60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
sp\|Q9SMT4\|RL132_ARATH	6.7e-81	73.79	Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C P...	[more]

BLAST of CsGy5G005130.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KKX2\|A0A0A0KKX2_CUCSA	4.3e-109	100.00	60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1	[more]
tr\|A0A1S3CTG8\|A0A1S3CTG8_CUCME	5.6e-109	99.51	60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1	[more]
tr\|A0A1S3BWP2\|A0A1S3BWP2_CUCME	3.5e-103	94.66	60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103494439 PE=3 SV=1	[more]
tr\|A0A0A0KU76\|A0A0A0KU76_CUCSA	3.9e-102	93.20	60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_4G025200 PE=3 SV=1	[more]
tr\|A0A067L2X8\|A0A067L2X8_JATCU	4.5e-98	87.86	60S ribosomal protein L13 OS=Jatropha curcas OX=180498 GN=JCGZ_05012 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018256	Ribosomal_L13e_CS
IPR001380	Ribosomal_L13e

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy5G005130	CsGy5G005130	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy5G005130.1	CsGy5G005130.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G005130.1.CDS.4	CsGy5G005130.1.CDS.4	CDS
CsGy5G005130.1.CDS.3	CsGy5G005130.1.CDS.3	CDS
CsGy5G005130.1.CDS.2	CsGy5G005130.1.CDS.2	CDS
CsGy5G005130.1.CDS.1	CsGy5G005130.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G005130.1.exon.4	CsGy5G005130.1.exon.4	exon
CsGy5G005130.1.exon.3	CsGy5G005130.1.exon.3	exon
CsGy5G005130.1.exon.2	CsGy5G005130.1.exon.2	exon
CsGy5G005130.1.exon.1	CsGy5G005130.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 191..206
None	No IPR available	PANTHER	PTHR11722:SF3	SUBFAMILY NOT NAMED	coord: 1..206
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 6..184 e-value: 5.0E-79 score: 264.2
IPR001380	Ribosomal protein L13e	PANTHER	PTHR11722	60S RIBOSOMAL PROTEIN L13	coord: 1..206
IPR001380	Ribosomal protein L13e	HAMAP	MF_00499	Ribosomal_L13e	coord: 44..127 score: 21.838
IPR018256	Ribosomal protein L13e, conserved site	PROSITE	PS01104	RIBOSOMAL_L13E	coord: 69..83