CsGy5G004030.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCAAAGCTACAGCCTCACTTGCTTTCCTCCTCTCTCTCAATCTCCTATTCTTCACCTTTGTCTCAGCATGTGACAATTGCTATGTCCCTGCCCCACCCAAGCCCAAGCCATGCCCTCCTACTAAACCAAACCCTCCATCTAACTATGGAAAGTGTCCTAAGGATGCCCTTAAAATCGGCGTCTGCGCCAAGCTTCTCGGCGGCCTTGTTGACCTCACCATCGGCAAGCCCCCAGTGACCCCATGCTGCACCTTGGTTCAAGGTCTTGCTGATCTTGAAGCTGCTGTCTGCCTTTGCACTGCCATTAAGGCCAGCGTTTTGGGGAAAACGATTAAAATCCCACTCCACCTCAGCTTGCTCCTTAATGTCTGCAACAAGAATCTTCCCAATGGATTCCAATGCTGA ATGGCTTCCAAAGCTACAGCCTCACTTGCTTTCCTCCTCTCTCTCAATCTCCTATTCTTCACCTTTGTCTCAGCATGTGACAATTGCTATGTCCCTGCCCCACCCAAGCCCAAGCCATGCCCTCCTACTAAACCAAACCCTCCATCTAACTATGGAAAGTGTCCTAAGGATGCCCTTAAAATCGGCGTCTGCGCCAAGCTTCTCGGCGGCCTTGTTGACCTCACCATCGGCAAGCCCCCAGTGACCCCATGCTGCACCTTGGTTCAAGGTCTTGCTGATCTTGAAGCTGCTGTCTGCCTTTGCACTGCCATTAAGGCCAGCGTTTTGGGGAAAACGATTAAAATCCCACTCCACCTCAGCTTGCTCCTTAATGTCTGCAACAAGAATCTTCCCAATGGATTCCAATGCTGA ATGGCTTCCAAAGCTACAGCCTCACTTGCTTTCCTCCTCTCTCTCAATCTCCTATTCTTCACCTTTGTCTCAGCATGTGACAATTGCTATGTCCCTGCCCCACCCAAGCCCAAGCCATGCCCTCCTACTAAACCAAACCCTCCATCTAACTATGGAAAGTGTCCTAAGGATGCCCTTAAAATCGGCGTCTGCGCCAAGCTTCTCGGCGGCCTTGTTGACCTCACCATCGGCAAGCCCCCAGTGACCCCATGCTGCACCTTGGTTCAAGGTCTTGCTGATCTTGAAGCTGCTGTCTGCCTTTGCACTGCCATTAAGGCCAGCGTTTTGGGGAAAACGATTAAAATCCCACTCCACCTCAGCTTGCTCCTTAATGTCTGCAACAAGAATCTTCCCAATGGATTCCAATGCTGA MASKATASLAFLLSLNLLFFTFVSACDNCYVPAPPKPKPCPPTKPNPPSNYGKCPKDALKIGVCAKLLGGLVDLTIGKPPVTPCCTLVQGLADLEAAVCLCTAIKASVLGKTIKIPLHLSLLLNVCNKNLPNGFQC
BLAST of CsGy5G004030.1 vs. NCBI nr
Match: XP_011654795.1 (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis sativus] >KGN50237.1 hypothetical protein Csa_5G161860 [Cucumis sativus]) HSP 1 Score: 274.2 bits (700), Expect = 2.3e-70 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. NCBI nr
Match: XP_008437102.1 (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo]) HSP 1 Score: 267.3 bits (682), Expect = 2.8e-68 Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. NCBI nr
Match: XP_004152411.2 (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis sativus] >KGN50240.1 hypothetical protein Csa_5G161890 [Cucumis sativus]) HSP 1 Score: 262.3 bits (669), Expect = 9.1e-67 Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. NCBI nr
Match: XP_004152412.1 (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis sativus] >KGN50239.1 hypothetical protein Csa_5G161880 [Cucumis sativus]) HSP 1 Score: 258.8 bits (660), Expect = 1.0e-65 Identity = 129/136 (94.85%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. NCBI nr
Match: XP_008437105.1 (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo]) HSP 1 Score: 250.8 bits (639), Expect = 2.7e-63 Identity = 124/136 (91.18%), Postives = 128/136 (94.12%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. TAIR10
Match: AT1G12090.1 (extensin-like protein) HSP 1 Score: 147.9 bits (372), Expect = 4.5e-36 Identity = 78/144 (54.17%), Postives = 98/144 (68.06%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. TAIR10
Match: AT1G62510.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 144.1 bits (362), Expect = 6.5e-35 Identity = 79/149 (53.02%), Postives = 95/149 (63.76%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. TAIR10
Match: AT4G12520.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 130.6 bits (327), Expect = 7.5e-31 Identity = 69/136 (50.74%), Postives = 86/136 (63.24%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. TAIR10
Match: AT4G12510.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 130.6 bits (327), Expect = 7.5e-31 Identity = 69/136 (50.74%), Postives = 86/136 (63.24%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. TAIR10
Match: AT4G12500.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 125.9 bits (315), Expect = 1.8e-29 Identity = 71/177 (40.11%), Postives = 98/177 (55.37%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. Swiss-Prot
Match: sp|P14009|14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota OX=4039 PE=2 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.2e-30 Identity = 68/136 (50.00%), Postives = 92/136 (67.65%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. Swiss-Prot
Match: sp|Q9SU33|ERLL3_ARATH (pEARLI1-like lipid transfer protein 3 OS=Arabidopsis thaliana OX=3702 GN=At4g12500 PE=2 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 3.3e-28 Identity = 71/177 (40.11%), Postives = 98/177 (55.37%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. Swiss-Prot
Match: sp|Q9S7I2|AIR1_ARATH (Putative lipid-binding protein AIR1 OS=Arabidopsis thaliana OX=3702 GN=AIR1 PE=2 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 5.7e-28 Identity = 67/129 (51.94%), Postives = 85/129 (65.89%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. Swiss-Prot
Match: sp|Q39176|ERLI1_ARATH (Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana OX=3702 GN=EARLI1 PE=1 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 2.8e-27 Identity = 70/168 (41.67%), Postives = 98/168 (58.33%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. Swiss-Prot
Match: sp|Q9SU34|ERLL2_ARATH (pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g12490 PE=2 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 8.2e-27 Identity = 52/92 (56.52%), Postives = 73/92 (79.35%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. TrEMBL
Match: tr|A0A0A0KP86|A0A0A0KP86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G161860 PE=4 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 1.5e-70 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. TrEMBL
Match: tr|A0A1S3ATS5|A0A1S3ATS5_CUCME (14 kDa proline-rich protein DC2.15-like OS=Cucumis melo OX=3656 GN=LOC103482621 PE=4 SV=1) HSP 1 Score: 267.3 bits (682), Expect = 1.9e-68 Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. TrEMBL
Match: tr|A0A0A0KKL9|A0A0A0KKL9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G161890 PE=4 SV=1) HSP 1 Score: 262.3 bits (669), Expect = 6.0e-67 Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. TrEMBL
Match: tr|A0A0A0KMW2|A0A0A0KMW2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G161880 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 6.6e-66 Identity = 129/136 (94.85%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of CsGy5G004030.1 vs. TrEMBL
Match: tr|A0A1S3ASV0|A0A1S3ASV0_CUCME (14 kDa proline-rich protein DC2.15-like OS=Cucumis melo OX=3656 GN=LOC103482623 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 1.8e-63 Identity = 124/136 (91.18%), Postives = 128/136 (94.12%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
|