CsGy4G016390.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G016390.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 21243491 .. 21243839 (+)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGATCACATTTTCCTGTTTTGCTTCATCGAGTATTATTCTCTATCACTGAACTATTGTAATTTCGTAATGTAATTTTTTTTTGTTTGTTATTTTAAAGTTAAAGAAGTATTTATTAAATGCTAATTCTTTGTCACATGGCAGTGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

mRNA sequence

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGATCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Coding sequence (CDS)

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGATCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Protein sequence

MVTQKLFIVSMLVAITFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCNNGR

Homology

[Close]

BLAST of CsGy4G016390.1 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 3.5e-39
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAITFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVA+TFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 79
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

[Close]

BLAST of CsGy4G016390.1 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 5.9e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAITFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of CsGy4G016390.1 vs. NCBI nr
Match: KGN61229.1 (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAITFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCNN 77
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

[Close]

BLAST of CsGy4G016390.1 vs. TrEMBL
Match: tr|A0A0A0L1R8|A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-39
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAITFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVA+TFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 79
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

[Close]

BLAST of CsGy4G016390.1 vs. TrEMBL
Match: tr|A0A0A0LHG9|A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAITFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of CsGy4G016390.1 vs. TrEMBL
Match: tr|A0A0A0LJG5|A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.3e-09
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MVTQKLFIVSMLVAITFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCNN 77
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

[Close]

BLAST of CsGy4G016390.1 vs. TrEMBL
Match: tr|A0A0A0LKF5|A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.1e-04
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 31 NCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 76
          +CV PCS+   D  C   CI ++ GAGFC PKLP  S  K CCCN
Sbjct: 11 HCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53

The following BLAST results are available for this feature:

BLAST of CsGy4G016390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54497.1	3.5e-39	98.72	hypothetical protein Csa_4G339000 [Cucumis sativus]	[more]
KGN61228.1	5.9e-10	50.00	hypothetical protein Csa_2G071930 [Cucumis sativus]	[more]
KGN61229.1	1.1e-08	46.75	hypothetical protein Csa_2G072430 [Cucumis sativus]	[more]

BLAST of CsGy4G016390.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G016390.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G016390.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1R8\|A0A0A0L1R8_CUCSA	2.3e-39	98.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1	[more]
tr\|A0A0A0LHG9\|A0A0A0LHG9_CUCSA	3.9e-10	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1	[more]
tr\|A0A0A0LJG5\|A0A0A0LJG5_CUCSA	7.3e-09	46.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1	[more]
tr\|A0A0A0LKF5\|A0A0A0LKF5_CUCSA	7.1e-04	53.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G016390	CsGy4G016390	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G016390.1.exon.1	CsGy4G016390.1.exon.1	exon
CsGy4G016390.1.exon.2	CsGy4G016390.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G016390.1.CDS.1	CsGy4G016390.1.CDS.1	CDS
CsGy4G016390.1.CDS.2	CsGy4G016390.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G016390.1	CsGy4G016390.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0