CsGy4G011420.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G011420.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	neurochondrin isoform X4
Location	Chr4 : 11030905 .. 11032007 (-)
Sequence length	359

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAATTTTTTGTATTGTACTTTATGCCCTAGCTGCCAAGTTATTTTCTTTTTAATTATTTCATAATCTAATAATTTCTTGAATACCTGGGAAATCTATTTTTAGGGGATCTTATCAATGAAAACACACTGATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGTAATTATGGGAAAAATTATAGTTGTAGTAGGATATGGGGATAGTGTTCCTTATTTAAGATTGTGATTTATGATTGTTTAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGGTAATATGTTCTATATTTGAAGGTGAAGATGAACATATGTTTATCAGCGCCCAATTATTACCTGCGATTCGGTATTTTATTGTACAAATATAAAATGCCTAAATTCCATTTCTATATTTACAAATGAACGTCCTTTCAATAATTCACTCCTTTCTTTGCAATTTTAGAAGAATCAGATAAGGAAGTTAAATGATTCAACATCCAAGTAAAAGCATATGAAGATAATTCAAATTTGAACATGTCTGTACAACTTATATGCTCAAAGAAACGAGTAATAAATGTGGGAAAGTTCCAATTCTTTCAGCAGATCCATTTCATAGAACTCTTAGTTCATTGTTTTTCCTTTTTTTTTTTTAATCTTTACCTATTATTTTATTTGGTTTAATGTGGTTGAGTGATACCACTTTTTAATTGACAAAACATTTTCATTTCATATTTCTTTCAAGTGGGAATCTCAACATCAGATTTCTTCTTTCTTCTTTGAAGTGGAAATTTCTTTGGTAGAAATTACTTTAGCCCATTTCACAATTTGAGTATATTCATACTAAAAGAACATCATTCCATGTGACTTTTACTCTTTTCAGTGTTTACTAGATGGTTTGGTTCTCTTTTGATTGTGGACTTTTCCTATTTTATGCAATCCTTATTGTTCCCGTGTTTCAGATAGCATGGACTTTCTTCTCCATATGATACATGTTTTATATACTTCAAAGAATTTCAGGTTCTCTCTCTCTTAGTGTGTGGGTGTGAGTTTACCTTTTTAGGGG

mRNA sequence

GTTGAATTTTTTGTATTGTACTTTATGCCCTAGCTGCCAAGTTATTTTCTTTTTAATTATTTCATAATCTAATAATTTCTTGAATACCTGGGAAATCTATTTTTAGGGGATCTTATCAATGAAAACACACTGATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGATAGCATGGACTTTCTTCTCCATATGATACATGTTTTATATACTTCAAAGAATTTCAGGTTCTCTCTCTCTTAGTGTGTGGGTGTGAGTTTACCTTTTTAGGGG

Coding sequence (CDS)

ATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGATAGCATGGACTTTCTTCTCCATATGA

Protein sequence

MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEIAWTFFSI

Homology

[Close]

BLAST of CsGy4G011420.1 vs. NCBI nr
Match: KGN54007.1 (hypothetical protein Csa_4G260440 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 5.9e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEIAWTFF 48
          MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWE+  + F
Sbjct: 1  MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIF 47

[Close]

BLAST of CsGy4G011420.1 vs. NCBI nr
Match: XP_004145520.1 (PREDICTED: uncharacterized protein LOC101217523 isoform X2 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 378 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 413

[Close]

BLAST of CsGy4G011420.1 vs. NCBI nr
Match: XP_008452892.1 (PREDICTED: neurochondrin isoform X1 [Cucumis melo] >XP_008452893.1 PREDICTED: neurochondrin isoform X1 [Cucumis melo] >XP_016901342.1 PREDICTED: neurochondrin isoform X2 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 378 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 413

[Close]

BLAST of CsGy4G011420.1 vs. NCBI nr
Match: XP_008452894.1 (PREDICTED: neurochondrin isoform X3 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 378 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 413

[Close]

BLAST of CsGy4G011420.1 vs. NCBI nr
Match: XP_008452895.1 (PREDICTED: neurochondrin isoform X4 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 378 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 413

[Close]

BLAST of CsGy4G011420.1 vs. TAIR10
Match: AT4G32050.1 (neurochondrin family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.0e-06
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 2   KVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           KVI+ LN++ G V EYL++AKEHG +KG D+LAS+
Sbjct: 374 KVIKILNETVGAVFEYLRDAKEHGIKKGTDLLASV 408

[Close]

BLAST of CsGy4G011420.1 vs. TrEMBL
Match: tr|A0A0A0L0A7|A0A0A0L0A7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G260440 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEIAWTFF 48
          MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWE+  + F
Sbjct: 1  MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIF 47

[Close]

BLAST of CsGy4G011420.1 vs. TrEMBL
Match: tr|A0A1S3BW48|A0A1S3BW48_CUCME (neurochondrin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 378 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 413

[Close]

BLAST of CsGy4G011420.1 vs. TrEMBL
Match: tr|A0A1S3BUW9|A0A1S3BUW9_CUCME (neurochondrin isoform X4 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 378 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 413

[Close]

BLAST of CsGy4G011420.1 vs. TrEMBL
Match: tr|A0A1S3BUZ3|A0A1S3BUZ3_CUCME (neurochondrin isoform X3 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 378 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 413

[Close]

BLAST of CsGy4G011420.1 vs. TrEMBL
Match: tr|A0A0A0L170|A0A0A0L170_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652750 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 418 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 453

The following BLAST results are available for this feature:

BLAST of CsGy4G011420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54007.1	5.9e-16	89.36	hypothetical protein Csa_4G260440 [Cucumis sativus]	[more]
XP_004145520.1	5.9e-08	83.33	PREDICTED: uncharacterized protein LOC101217523 isoform X2 [Cucumis sativus]	[more]
XP_008452892.1	5.9e-08	83.33	PREDICTED: neurochondrin isoform X1 [Cucumis melo] >XP_008452893.1 PREDICTED: ne...	[more]
XP_008452894.1	5.9e-08	83.33	PREDICTED: neurochondrin isoform X3 [Cucumis melo]	[more]
XP_008452895.1	5.9e-08	83.33	PREDICTED: neurochondrin isoform X4 [Cucumis melo]	[more]

BLAST of CsGy4G011420.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32050.1	1.0e-06	60.00	neurochondrin family protein	[more]

BLAST of CsGy4G011420.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G011420.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0A7\|A0A0A0L0A7_CUCSA	3.9e-16	89.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G260440 PE=4 SV=1	[more]
tr\|A0A1S3BW48\|A0A1S3BW48_CUCME	3.9e-08	83.33	neurochondrin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1	[more]
tr\|A0A1S3BUW9\|A0A1S3BUW9_CUCME	3.9e-08	83.33	neurochondrin isoform X4 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1	[more]
tr\|A0A1S3BUZ3\|A0A1S3BUZ3_CUCME	3.9e-08	83.33	neurochondrin isoform X3 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1	[more]
tr\|A0A0A0L170\|A0A0A0L170_CUCSA	3.9e-08	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652750 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G011420	CsGy4G011420	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G011420.1	CsGy4G011420.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G011420.1.five_prime_UTR.1	CsGy4G011420.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G011420.1.exon.3	CsGy4G011420.1.exon.3	exon
CsGy4G011420.1.exon.2	CsGy4G011420.1.exon.2	exon
CsGy4G011420.1.exon.1	CsGy4G011420.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G011420.1.CDS.3	CsGy4G011420.1.CDS.3	CDS
CsGy4G011420.1.CDS.2	CsGy4G011420.1.CDS.2	CDS
CsGy4G011420.1.CDS.1	CsGy4G011420.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G011420.1.three_prime_UTR.1	CsGy4G011420.1.three_prime_UTR.1	three_prime_UTR