CsGy4G010600.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTCTCGTGAAGGTTAAGGCCAAAACGGTACCAAAATTCCCATATCCCATTTAATTTCATGGTGTAACATACATGATTTCATGTTCAAGTGGAATGCACACTATATAGTTCACTTGTTCTCTCTAATCGTTCTCCAATTTTCTTCTTTTTGCTCTTACAAACATGAAAACTATCTTTAGTTGAGAATCGCATTAGCGACGTCTCTTCCAATTTGACTGACTTCAACTATCAACAATTTTTTATTTTCTCACACCGTTGTCATTTAATGCACACGACTTAATTTAATGGTGTACATGGCAACCTATTTTTTTCAATACTTTTACAACAATCTACTTTTTATTATAATTATTTAAATAGCATTATATATATTTTTTTAAAATCCAGTTTTTCTCTCTAAATTCTCATCCCTTGCCTTCCATCTCCCCGTCAATTCATTCGTTCATAGTTTTCTTCGTCTTCTTCGTTTCTCCCTTCAGATCCTCGCACAGGAATTCTTTGTTCTGTTTTTTCTCCCATATTCATCTTCAATTTTTCTCTCATTTGCCTTACAACAATCTACCAAATTCCTCTCCTTTTGTCATCATTTCCCTCTTAACCATCTGCCATTTCGTTTCTTCTTCATCTCGGATTTCATATTTGACGAAAACCCAAGTCTCTAATTGCGATTCTGATTCCGATGTCGGCTTTAGAAGGAGGTGGAGGAGGTACCCTTTCGGAGATATACCAAAGTGCGAAGAGGCTGCTTTTGAGGACCAGAGATGGGCTTGAGAAGCTTGAGCGTCTTGAATACTCGGCGGCTAGCGGTATGGATTCTCCCGAGCTTTCCTTCTCGATCAAGAAGGATATTACTCAGATCCAGTCTCTATGTGTTGAGATGGATAGGTTATGGCGGTCTATTGCGGCCAAGTCTCAACGTGATTTGTGGAAAAGGTTCTTCTTTCATTCAATTTGTAATTGTACTGTTTCCATGTTCATCTTTTTTGGGCTGAATTTTGAATTAGATGGTATTTGTTTTGATTTGGTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATTTCCTTATTCTCTCTGAATTACTTGTTTTGTTAATTTATTCAAATGTGGTGGATGTTATGTTCTCCTGTTTGTCTGTTGTGGCTTTTTGTTTCCTTGGAGTTGAATCATTGTTTCTTCCATCAAAGAGAAGAGAAAAATGAAATGGGGTGGTCTCTTAGATCCTGAATTGAATTTTGTTCGGGTTACAGTATGGGATTGGGATTTTATTATAATTATGCATGAACTTATAAGGCTTATGTCCATTTTGACAATGCCTAACCTTGATGTGTTACAACTTGGAATTGTCCTGCAGAAAGGTGGAACAAGTTGCAGAGGAGGCTGATTCTATGAAACAAAGTTTGGACAAGTATTTTCTTAGAAACCAGAAGCGGATGACGGAAGCAAAGGAGAGGGCAGAATTGCTTGGAAGAGCTGTAAGTACCTATTTTTAGCTACCTGTGGCTTCTGGTTAGCTGAACCTCTTTTTTAACCTTCATTTTGAATGGTCTTTGGTTTTGGTTTTTGTAGAGTGGCGACTCTGCTCACATTTTAAGAATTTTTGACGATGAGGCACAAGCTATGAACTCGGTTCGAAATTCATCACGGATGTTAGAGGAAGCTAGTGCAACCGGAGAAGCTATCCTTTTCAAATACTCTGAGCAGAGGGATCGCCTGAAGGTATGTTCATAACTGAGAGCATGTAGATAGATATGTTTTTATTTGCTGAGGCTTCTGTTCTGTTAACTGTTAAATCAATCTTTGAAGACTATGGATATGTGTTCCCTGTAAATGTGAATTTGTTGAAGATTTATTCTATAATAGTCTCTAGTTGCTTTAGGAGATAGCTGCAGTTATCGTGCCCGAGTTAGCATTGAAATTTACGGAAGTTACTTACTACATATGAATATTTACTGAAGTTTGTGTCTATATTTTGGAGTTATAGATTCTCCTAAAGTAAAAACACTCTGAATGGCTTGAGATTACGTGCATTATGCTACGTAATTACTCTAAAAGAATGATTGGCTCACAGTTTAAACAATCTTTAGTCGATGAAGTCCAACTTCATGTGAACTATGATGAGACAGTGTGGAAAAGAATGTAATGATATAAATTTAGGCAGGCATGGTTCTTGTTTTCTGTTTTATTCTGTAGTTAGTATCTAGGATTGGATAAAATAAATTTAGTGATACAAATTTATAGTATGGGGGATTTGTAATTGTATAACCTATAATAATGCAAATATAAACTTATGGCCGAACATTCCTTGACGGGTTTTGATGGTGCCTTAATTATCATTGACTTCCGTACTGATAGATTTGGTTATCTTGCTAAACTAGAGTACTTTCTTAGTTTCATTCAATTTTTTCTCAGACCGAGTAAAACATGCAATTATAAACCACGGTAGGCTGAAATGAAATCCACAGCTACTTTACTAAAGTCTTTGTTGACTTTTACTGCAGAGTATAGAGCATATAGACTCTCCCCTCTGATTCATCCATTTCTGTCTCTCATGTTCATTAATTTGTTTTTGTGAATCAGAGAGCACAAAGGAAGGCACTGGATGTCCTTAACACAGTGGGGCTCTCCAACTCCGTACTGAAACTCATTGAGAGACGGCACCGAGTTGATAATTGGATTAAATATGCAGGCATGATTTTAACCATAGTTGTTGTGTTCTTTTTTGTTCGATGGGTACGCTAATTCTCACCCAATGATTGCCGTGCAATTCAATTCATGCTGGCTTCTTGAAGAAAGGTACATAAATACACATTGAGGCTGCTTTAATTTGACCTCCTAGGGTTTACACCTCTAGAGGTCTCACCATCCAGAAGACAAAATACTACACACTAAATAGACTACGATGATGTTCCCCATGTCGAGCTTTACTTCGCAAGTGTGATAACTTGATTATTTTTCAGCTAGTCTGTAAACTCCCTTCTGGGTTGCTATAGTATAAGTTCTGATTCAAGATGCACGTATCTGTCAGAAGTGGCATCTTGTTAATGGTTTTGATGATTCTAGGCTTTTGTTTGTTACATTTCATGAACTTTTGAACTTTTTCTGGTGCCTTGGGTTCTCTATAGGTTTTTTCTTTCACTATTGTCATTCAAACAGGTGGAGATTTTGAACCTACAACTAAGCTTAGTTTATGCAGTTGAACTATGTTAAGGTTAGTTGGCTCAACATTCTCTGTAGTGTTTTTCCAATTTTGGAAGGAATGGTAAATGTTAAGTCCTTAGGTAAAAGCTTATTAGAATGGTGTTTAAACTCGAAAGTTGTACTCTTGTTGTAACTCTGCTATTTGGTTTAGAAAGTCCTCAATTTTCGGCATATCAATCTTTACCAGGAGGAACTATGAAATTATTTCAGCAATTTATAGTTTGGTTACTTTAGTTTGAAGGCAAGCTCAATGTCTGCAATGAAATATTTGGAATATTTGGAGTTGAATAATTTTGTTTCCTCATTATGAAAGATAGATTATGTACTTGAAATCCATGTGATAAGGTGGTTATTTATGTTTGACATAATTGTAGGAATGGAAAGAACGCAGGAGGTGGTTGGGGTTTTGGCAAAATTCTAA CTCTCGTGAAGGTTAAGGCCAAAACGGTACCAAAATTCCCATATCCCATTTAATTTCATGGTGTAACATACATGATTTCATGTTCAAGTGGAATGCACACTATATAGTTCACTTGTTCTCTCTAATCGTTCTCCAATTTTCTTCTTTTTGCTCTTACAAACATGAAAACTATCTTTAGTTGAGAATCGCATTAGCGACGTCTCTTCCAATTTGACTGACTTCAACTATCAACAATTTTTTATTTTCTCACACCGTTGTCATTTAATGCACACGACTTAATTTAATGGTGTACATGGCAACCTATTTTTTTCAATACTTTTACAACAATCTACTTTTTATTATAATTATTTAAATAGCATTATATATATTTTTTTAAAATCCAGTTTTTCTCTCTAAATTCTCATCCCTTGCCTTCCATCTCCCCGTCAATTCATTCGTTCATAGTTTTCTTCGTCTTCTTCGTTTCTCCCTTCAGATCCTCGCACAGGAATTCTTTGTTCTGTTTTTTCTCCCATATTCATCTTCAATTTTTCTCTCATTTGCCTTACAACAATCTACCAAATTCCTCTCCTTTTGTCATCATTTCCCTCTTAACCATCTGCCATTTCGTTTCTTCTTCATCTCGGATTTCATATTTGACGAAAACCCAAGTCTCTAATTGCGATTCTGATTCCGATGTCGGCTTTAGAAGGAGGTGGAGGAGGTACCCTTTCGGAGATATACCAAAGTGCGAAGAGGCTGCTTTTGAGGACCAGAGATGGGCTTGAGAAGCTTGAGCGTCTTGAATACTCGGCGGCTAGCGGTATGGATTCTCCCGAGCTTTCCTTCTCGATCAAGAAGGATATTACTCAGATCCAGTCTCTATGTGTTGAGATGGATAGGTTATGGCGGTCTATTGCGGCCAAGTCTCAACGTGATTTGTGGAAAAGAAAGGTGGAACAAGTTGCAGAGGAGGCTGATTCTATGAAACAAAGTTTGGACAAGTATTTTCTTAGAAACCAGAAGCGGATGACGGAAGCAAAGGAGAGGGCAGAATTGCTTGGAAGAGCTAGTGGCGACTCTGCTCACATTTTAAGAATTTTTGACGATGAGGCACAAGCTATGAACTCGGTTCGAAATTCATCACGGATGTTAGAGGAAGCTAGTGCAACCGGAGAAGCTATCCTTTTCAAATACTCTGAGCAGAGGGATCGCCTGAAGAGAGCACAAAGGAAGGCACTGGATGTCCTTAACACAGTGGGGCTCTCCAACTCCGTACTGAAACTCATTGAGAGACGGCACCGAGTTGATAATTGGATTAAATATGCAGGCATGATTTTAACCATAGTTGTTGTGTTCTTTTTTGTTCGATGGTTGAACTATGTTAAGGTTAGTTGGCTCAACATTCTCTGTAGTGTTTTTCCAATTTTGGAAGGAATGGTAAATGTTAAGTCCTTAGGAATGGAAAGAACGCAGGAGGTGGTTGGGGTTTTGGCAAAATTCTAA ATGTCGGCTTTAGAAGGAGGTGGAGGAGGTACCCTTTCGGAGATATACCAAAGTGCGAAGAGGCTGCTTTTGAGGACCAGAGATGGGCTTGAGAAGCTTGAGCGTCTTGAATACTCGGCGGCTAGCGGTATGGATTCTCCCGAGCTTTCCTTCTCGATCAAGAAGGATATTACTCAGATCCAGTCTCTATGTGTTGAGATGGATAGGTTATGGCGGTCTATTGCGGCCAAGTCTCAACGTGATTTGTGGAAAAGAAAGGTGGAACAAGTTGCAGAGGAGGCTGATTCTATGAAACAAAGTTTGGACAAGTATTTTCTTAGAAACCAGAAGCGGATGACGGAAGCAAAGGAGAGGGCAGAATTGCTTGGAAGAGCTAGTGGCGACTCTGCTCACATTTTAAGAATTTTTGACGATGAGGCACAAGCTATGAACTCGGTTCGAAATTCATCACGGATGTTAGAGGAAGCTAGTGCAACCGGAGAAGCTATCCTTTTCAAATACTCTGAGCAGAGGGATCGCCTGAAGAGAGCACAAAGGAAGGCACTGGATGTCCTTAACACAGTGGGGCTCTCCAACTCCGTACTGAAACTCATTGAGAGACGGCACCGAGTTGATAATTGGATTAAATATGCAGGCATGATTTTAACCATAGTTGTTGTGTTCTTTTTTGTTCGATGGTTGAACTATGTTAAGGTTAGTTGGCTCAACATTCTCTGTAGTGTTTTTCCAATTTTGGAAGGAATGGTAAATGTTAAGTCCTTAGGAATGGAAAGAACGCAGGAGGTGGTTGGGGTTTTGGCAAAATTCTAA MSALEGGGGGTLSEIYQSAKRLLLRTRDGLEKLERLEYSAASGMDSPELSFSIKKDITQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEADSMKQSLDKYFLRNQKRMTEAKERAELLGRASGDSAHILRIFDDEAQAMNSVRNSSRMLEEASATGEAILFKYSEQRDRLKRAQRKALDVLNTVGLSNSVLKLIERRHRVDNWIKYAGMILTIVVVFFFVRWLNYVKVSWLNILCSVFPILEGMVNVKSLGMERTQEVVGVLAKF
BLAST of CsGy4G010600.1 vs. NCBI nr
Match: XP_004149111.1 (PREDICTED: membrin-11 [Cucumis sativus] >KGN53918.1 hypothetical protein Csa_4G188920 [Cucumis sativus]) HSP 1 Score: 427.9 bits (1099), Expect = 2.5e-116 Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. NCBI nr
Match: XP_008442003.1 (PREDICTED: membrin-11 [Cucumis melo]) HSP 1 Score: 411.4 bits (1056), Expect = 2.4e-111 Identity = 218/222 (98.20%), Postives = 220/222 (99.10%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. NCBI nr
Match: XP_023518923.1 (membrin-11-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109 Identity = 212/227 (93.39%), Postives = 222/227 (97.80%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. NCBI nr
Match: XP_022966452.1 (membrin-11-like [Cucurbita maxima]) HSP 1 Score: 405.2 bits (1040), Expect = 1.7e-109 Identity = 212/227 (93.39%), Postives = 221/227 (97.36%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. NCBI nr
Match: XP_022950332.1 (membrin-11-like [Cucurbita moschata]) HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107 Identity = 210/227 (92.51%), Postives = 218/227 (96.04%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. TAIR10
Match: AT2G36900.1 (membrin 11) HSP 1 Score: 301.6 bits (771), Expect = 4.8e-82 Identity = 151/219 (68.95%), Postives = 189/219 (86.30%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. TAIR10
Match: AT5G50440.1 (membrin 12) HSP 1 Score: 285.8 bits (730), Expect = 2.8e-77 Identity = 147/223 (65.92%), Postives = 181/223 (81.17%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. Swiss-Prot
Match: sp|Q9SJL6|MEM11_ARATH (Membrin-11 OS=Arabidopsis thaliana OX=3702 GN=MEMB11 PE=1 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 8.7e-81 Identity = 151/219 (68.95%), Postives = 189/219 (86.30%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. Swiss-Prot
Match: sp|Q9FK28|MEM12_ARATH (Membrin-12 OS=Arabidopsis thaliana OX=3702 GN=MEMB12 PE=2 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 5.0e-76 Identity = 147/223 (65.92%), Postives = 181/223 (81.17%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. Swiss-Prot
Match: sp|O35166|GOSR2_MOUSE (Golgi SNAP receptor complex member 2 OS=Mus musculus OX=10090 GN=Gosr2 PE=1 SV=2) HSP 1 Score: 74.3 bits (181), Expect = 2.3e-12 Identity = 59/218 (27.06%), Postives = 113/218 (51.83%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. Swiss-Prot
Match: sp|O35165|GOSR2_RAT (Golgi SNAP receptor complex member 2 OS=Rattus norvegicus OX=10116 GN=Gosr2 PE=1 SV=2) HSP 1 Score: 70.5 bits (171), Expect = 3.3e-11 Identity = 57/218 (26.15%), Postives = 112/218 (51.38%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. Swiss-Prot
Match: sp|Q9VRL2|GOSR2_DROME (Probable Golgi SNAP receptor complex member 2 OS=Drosophila melanogaster OX=7227 GN=Membrin PE=2 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 2.1e-10 Identity = 62/209 (29.67%), Postives = 105/209 (50.24%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. TrEMBL
Match: tr|A0A0A0KWL2|A0A0A0KWL2_CUCSA (Membrin OS=Cucumis sativus OX=3659 GN=Csa_4G188920 PE=3 SV=1) HSP 1 Score: 427.9 bits (1099), Expect = 1.6e-116 Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. TrEMBL
Match: tr|A0A1S3B4P2|A0A1S3B4P2_CUCME (Membrin OS=Cucumis melo OX=3656 GN=LOC103485998 PE=3 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 1.6e-111 Identity = 218/222 (98.20%), Postives = 220/222 (99.10%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. TrEMBL
Match: tr|A0A2P5BR73|A0A2P5BR73_9ROSA (Membrin OS=Trema orientalis OX=63057 GN=TorRG33x02_311670 PE=3 SV=1) HSP 1 Score: 353.6 bits (906), Expect = 3.9e-94 Identity = 185/225 (82.22%), Postives = 208/225 (92.44%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. TrEMBL
Match: tr|A0A2P5AAR3|A0A2P5AAR3_PARAD (Membrin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_351200 PE=3 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 4.3e-93 Identity = 183/220 (83.18%), Postives = 204/220 (92.73%), Query Frame = 0
BLAST of CsGy4G010600.1 vs. TrEMBL
Match: tr|A0A2P5DXM0|A0A2P5DXM0_PARAD (Membrin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023730 PE=3 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 6.3e-92 Identity = 182/225 (80.89%), Postives = 205/225 (91.11%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
|