CsGy3G021370.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy3G021370.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 19273806 .. 19278312 (+)
Sequence length480
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCTTCGTTTGCTTCACCTTCACGCCAACCTTCGCATTCTCTTCACCTTCACATTTGCGTCGTCTCTTCACGTTCTCTTCACGCCTTTCGTCGTCAACTGCGTTTGCGTCGTCCTCTGTTGCCATTTCCATCGTCCTCCGTCGCCAGCATCTCCTTCGTCGCCCACTTATTCGACGCCTGCGAAGATCTCCAACACCGGCCACTCCATTTGTAAATAGATAATTAAATGTAAATAGATAGGTAGATATTATGTTTACATCAAACGCAAAGATGACATCAAGATGTTTATTTAACAACCTCTTTTAAATGGTGGATTTTAATCATCTTGGTTACACTTAGTTAGCATTAAAACTAATTATTAATTAAAATTCATGTTGAAATTACATATGCTAATTGTTTAGTGAAAATATTATTTCACAATTTAAAATACTTCTTTAATTTATACTTCACGGTGTGTGCTGTGTGATGGTTGAAACAGTGAAGATAAATAAATCCAAGTCAACCTAGAGGGAACGGAAAAAGAGATAATCAACAGAATAATAGGAAGTAACATTTGATTTCTTTCTAGCCAAATTGTCCACAATAAAACAGCAATAAAGTTGAAAGCAATGACCCCTTTTTTTGTTCTTCTGGTTGATATAGAACAAATCTCCTTGCATAAGGATTTGATGCTCTCATGGGAGTTCTGCCAAAGAAGCAGATTATCAGTCCTATTCCAAAGGTCTTGAGCATTCTCGCAGGCGATGAACATGTGGTTTAAGGTTTCTGATTTGTTTTCGCAAAGATTGCATCAGTTTGGATTGGAGAATGGAGATCATGACCATGTTGATACTATATGTTAATTAAAGGGTTGTTGAGAATAAGATTACGGATCACATATATTATATCATATTATATTAATTACTATGATAACATCAAGCAAAACTCATGATTCAAAAAGATTGATTGTGGTCTATTGACGGTGTTTTTATAGTTTCTTATACGTTTGTGAATAAGAAATCATATACTGTGAAAAACAAAGAAATAAAGATACATAGTTCGTTAAAAAAAAAATTTAATATTTATTCATGTATGTATATTACACCATTAATCAATTTTGTGCACATAGTGCTTGAACTGCCAATCTTGCAGATAAATTTGTAGCATCGCCTAATCCAAATGACTTTGCAGATACATCGATTGAACAACTTTCCATGCCAATGCAAGCTTTTTCAAGAATAAGAGCAATGTTTGTCACATCCCATGAACCTTTCTTAAACGAACCACATTTTCCCCCTGGATTTCCGTAGCTAGCAAATTGGATTTCAGAGATGACATGTCCTCCCTGACAAGACAACTCTAAGGTGCTTCCTTCATTAGCATTTCCACATATAGTTCCTATTGTGATTGTTTGAACTGACACTTGTTGTGGATTTCCACCAATTTCTTCAAATAAAATCAATGTGTTTGTGTCGCTTGAAAGAAATGATCTTGGAACATGATACCATCTTTGAGAAGGATTTCCACAATTTTCCACACATTTGCTAGGGTTGTATGCACCTCTGTAGTCACATGTTGCGCTGCAACTATCATTGCCAGCAATGAAAGATGGCCAAAATCGGCCTATGCTTTGCCCATTTACCCATGCTTGGCCTTTTCCCATTCCTTGCATGTCCAAGACTACTGGGTCAATTCCAGCAGGTGTCTTAAAGCTAGTCTTGTACCATGTCATTCGCCTTCCAATAGATTTTTGATTTAGCGGAATCCAATTTGTTCTTTGTGAGAACATCGGGTTGTAAATTTGCTTCATTTCTCCATTTAATCCAACCTTATAAGACCATAAATTTGATGACAAATCAGTTGTCACATTTCCATCTCCAATTAGATAGATCGGGCCTCCATCGATTCCTGTTGGCACCATATCATAAAACGCGTCATAATTCTTCAACCCAACTGTGGCACTCAAAAGAGTTATTGTGTTGATTCCCGATTTTAGTAGAATGGGTTTCTCAAACACAAAACTCTGGCCATTACTCCCCCATTTCGACCCAATGTATCTTTTATTGACGAAAGCATGAAGCACATGACCCTTTGTATTTACTTGGAGAGTCACATTTTGAAGTGAAGATGTTCCGTTAGTGTCAACCTTCGTCATGTACCAGAAGTAATCGCTAAAATCAACTGTGACCCTTTTTTGTTCCAAAAGAAGGTTTGCCGCAAATTTACCATTTCCTTGCAGTGTGTCTTTCATAGGTTCTGGAGCCCAAGCCCATGACAGTTGTGCATTTTCCTTCTCATTTTGCTCCTTCACAAACATAGATGTCTGAGAATTTACTTTTGCAGTGTTGTAAACCTCCTTGTTGCAACCATCAAGAATGCTCACAGACCAAGCTGGTACAAAATATTTTCCATCTTCTTGTAGATCTATGGTGGCATCATTTTTCCCTCTGTGTTGCTTAAAAAGCAAAACCTCTCCCCAGTTGTTGGGTTAGAAAATTTCGTTAAAGTTACAGAGCTACCAAAGTTTTGGTTTGAGCGTGTGCTGTTAGTGAGAATCTTCTCTCCTAACTTGATTGATGCATGGAGTTGTTTGAGATGCCCCCATTTAGGTTGATTCAAGTTCCCATATTCATCAAGTGGGGCGTTGTAGTCGTAAGATGTAGTGATGAATGGACCTCCCGATGTCCTTCCAAAGTTGGTGCCTCCATGATACATGTAATAATTGTTGAACACACCACCAGATTGAAAAAATCTTGCCACAGAAAATGCTACATCTTCTGCAGTTCTATAAGGGTCTTTGTCGCCCCATTTCTTGAACCATCCCACCCAATTTTCAGTGAACATTTTTGGGCTCTTAGGATTGTTTGGAGTAAAGTTATCACAATAGAATCCATTGCATGTATTAATCATAGGTTGTGGGGCATCACTTTGTTGGCACATGATCCATGGAACGCCAATATTGAGAGATTCGGCCATTTGAGCACACCAATTGATGTATGCTTTTCCTGCATCTCCATAAGCTGGTGTCATCACATTTCCATACTCATTCTCGATTTGAGCTAATATTATTGGCCCTCCTTGTGAAGCAAAGAGATTGGCTTGTTTACACATATTTACTATCTTTGTCGTGAAAGTTTGCATTTCATTCTTGTAAACTTGATTGTTAGTTCGTAGTTGGATTCCTGGCATATTGTGCAACCACACTGGAAAGCCTCCGTAGTTCCACTCGGCACACACGTAAGGACCAATCCTCATGACAACATAAAGTCCAGCGTCTTGGATAAGTTGGAAGAATTTAATAAAATCTAAACGTCCAGAGAAATCATATTTTCGTCGTTGTGGCTCGTGACGATCCCAGAAAATGTATGTCTCAATTGCATCAAGTCCACCATCTTTAGCTTTTTGAATGAGATCAGGCCACATTGCTTCAGTGCTGCGTGGATAATGAATTGAGCCTGAGAAGATAATGCGCCGTTCTCCATTGATAATTAACGCATTTGAATCATATGAAACATTATCTCCTATGCAAAAAGTCAAGCAAGCTAGAGTTGCAACAAGCCATTGAAGCTTAAACATCCTTTATCCGGCCACAACTTGTGTCCTTGGTTTATTTGTTTTTCTCAATCGATGTGTTTATTTATATAGAATACATTGTGATAAGGTGAGAGTTCTTTCCTACGTATATTTGTGTTCAAGTTGTTGAATCAATTCTTAACATAGAAAACCGCTGACAAATTTTTTTTTGATATGAGTTGCATCCTTTGAAATTGGAGAATCCTAGTTTGCCTTATCCTTAAATAACATTTTGCCGAATTACAGCTGTTATACGCAACTAACAAAGTTGTGTGTTTTTCCCCTAAAAAAACATAAGATTCTATTTTTCATTTTTCACATTTGGTTTCACTACTACAAAACCTACTTTACTTGACACTAACAACTTTTACATACTTGACGTTTTCATTAGAAAAAAAATGCCAAGTATTGATCAGTTTAAAGAAAAAACGTCAAGTATACTTGGAAAAAGCAAAGTTTTCGCGAACTTTTCGAACTATCTCATGTTAGCTTTTACTCGACGTTTCTTTCGCGTCAAGTATAGTTAAATTTACTTGACACGGAAAAAACATCAAGTATAGTTAACATTTTTATTTGACTCGTTTGAAACTCAAGTATAAAAATATATACACCTTTTTTATTTTTAGCATGAGAGAAAACTTTAAAAAAAATATTAAAAAGCATCCCGACACCTTTCCCTTATTAGCTCTCATCACCACGGCTCCACCTCTTCACGCATTCTTCGCGTTCGCGGTATGACTGCTTCGTTTGCTTCACCTTCACGCCAACCTTCACATTCTCTTCACCTTCACATTTGCGTCGTCTCTTCACGCCTTTCGTCGTCAACTGCGTTTGCGTCGTCCTCTGTTGCCATTTCCATCGTCCTCCGTCGCCAGCATCTCCTTCGTCGCCCACTTATTCGACGCCTGCGAAGATCTCCAACACCGGCCACTCCATTTGTAAATAGATAA

mRNA sequence

ATGACTGCTTCGTTTGCTTCACCTTCACGCCAACCTTCGCATTCTCTTCACCTTCACATTTGCGTCGTCTCTTCACGTTCTCTTCACGCCTTTCGTCGTCAACTGCGTTTGCGTCGTCCTCTGTTGCCATTTCCATCGTCCTCCGTCGCCAGCATCTCCTTCGTCGCCCACTTATTCGACGCCTGCGAAGATCTCCAACACCGGCCACTCCATTTCTCTCATCACCACGGCTCCACCTCTTCACGCATTCTTCGCGTTCGCGGTATGACTGCTTCGTTTGCTTCACCTTCACGCCAACCTTCACATTCTCTTCACCTTCACATTTGCGTCGTCTCTTCACGCCTTTCGTCGTCAACTGCGTTTGCGTCGTCCTCTGTTGCCATTTCCATCGTCCTCCGTCGCCAGCATCTCCTTCGTCGCCCACTTATTCGACGCCTGCGAAGATCTCCAACACCGGCCACTCCATTTGTAAATAGATAA

Coding sequence (CDS)

ATGACTGCTTCGTTTGCTTCACCTTCACGCCAACCTTCGCATTCTCTTCACCTTCACATTTGCGTCGTCTCTTCACGTTCTCTTCACGCCTTTCGTCGTCAACTGCGTTTGCGTCGTCCTCTGTTGCCATTTCCATCGTCCTCCGTCGCCAGCATCTCCTTCGTCGCCCACTTATTCGACGCCTGCGAAGATCTCCAACACCGGCCACTCCATTTCTCTCATCACCACGGCTCCACCTCTTCACGCATTCTTCGCGTTCGCGGTATGACTGCTTCGTTTGCTTCACCTTCACGCCAACCTTCACATTCTCTTCACCTTCACATTTGCGTCGTCTCTTCACGCCTTTCGTCGTCAACTGCGTTTGCGTCGTCCTCTGTTGCCATTTCCATCGTCCTCCGTCGCCAGCATCTCCTTCGTCGCCCACTTATTCGACGCCTGCGAAGATCTCCAACACCGGCCACTCCATTTGTAAATAGATAA

Protein sequence

MTASFASPSRQPSHSLHLHICVVSSRSLHAFRRQLRLRRPLLPFPSSSVASISFVAHLFDACEDLQHRPLHFSHHHGSTSSRILRVRGMTASFASPSRQPSHSLHLHICVVSSRLSSSTAFASSSVAISIVLRRQHLLRRPLIRRLRRSPTPATPFVNR
Homology
[Close]
BLAST of CsGy3G021370.1 vs. NCBI nr
Match: KGN66623.1 (hypothetical protein Csa_1G650100 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 5.0e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MTASFASPSRQPSHSLHLHICVVSSRSLHAFRRQLRLRRPLLPFPSSSVASISFVAHLFD 60
          MTASFASPSRQPSHSLHLHICVVSSRSLHAFRRQLRLRRPLLPFPSSSVASISFVAHLFD
Sbjct: 1  MTASFASPSRQPSHSLHLHICVVSSRSLHAFRRQLRLRRPLLPFPSSSVASISFVAHLFD 60

Query: 61 ACEDLQHRPLHF 73
          ACEDLQHRPLHF
Sbjct: 61 ACEDLQHRPLHF 72

[Close]
BLAST of CsGy3G021370.1 vs. TrEMBL
Match: tr|A0A0A0LXY6|A0A0A0LXY6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G650100 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MTASFASPSRQPSHSLHLHICVVSSRSLHAFRRQLRLRRPLLPFPSSSVASISFVAHLFD 60
          MTASFASPSRQPSHSLHLHICVVSSRSLHAFRRQLRLRRPLLPFPSSSVASISFVAHLFD
Sbjct: 1  MTASFASPSRQPSHSLHLHICVVSSRSLHAFRRQLRLRRPLLPFPSSSVASISFVAHLFD 60

Query: 61 ACEDLQHRPLHF 73
          ACEDLQHRPLHF
Sbjct: 61 ACEDLQHRPLHF 72

The following BLAST results are available for this feature:
BLAST of CsGy3G021370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66623.15.0e-32100.00hypothetical protein Csa_1G650100 [Cucumis sativus][more]
BLAST of CsGy3G021370.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G021370.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G021370.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXY6|A0A0A0LXY6_CUCSA3.3e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G650100 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G021370CsGy3G021370gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G021370.1.exon.1CsGy3G021370.1.exon.1exon
CsGy3G021370.1.exon.2CsGy3G021370.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G021370.1.CDS.1CsGy3G021370.1.CDS.1CDS
CsGy3G021370.1.CDS.2CsGy3G021370.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G021370.1CsGy3G021370.1-proteinpolypeptide