CsGy3G007220.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G007220.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Ethylene-responsive transcription factor 13
Location	Chr3 : 6287392 .. 6287865 (-)
Sequence length	474

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGCAGCAGCAGCAGCAGCTTGGAAGGGTCGTCGTCGGATTTATTTCATTTGGAGCAGATTCGGCGGCATCTTCTAGAAGATGACTTAGGGAAAGGGAGTACTCATAATAATGTTGAGGATGGAATAATCAGGTATGATATTAGTAGGAGTGGAGCTGGTTGGGAGATGAGTAATAACAACAACAATATGGTGGATCAAATGTCTTCAATTATTATTAGAGACAATCCGGAGGAGAAGTCTCAGCCTCGGCCTCGAGGTTTGCAGTTCAGAGGAGTGAGGAGGAGGCCTTGGGGGAAGTACGCGGCAGAAATCAGAGACCCGAGCAAAAAAGGAGCTCGAATATGGCTGGGAACTTACCACACCGCCCAAGACGCTGCTTTAGCTTACGATCGAGCTGCTTTTCAGATGCGAGGGGCCAAAGCAAAACTCAACTTCCCTCACATCATTTCTTCTAACAACTACTCATGA

mRNA sequence

ATGTTGAGCAGCAGCAGCAGCAGCTTGGAAGGGTCGTCGTCGGATTTATTTCATTTGGAGCAGATTCGGCGGCATCTTCTAGAAGATGACTTAGGGAAAGGGAGTACTCATAATAATGTTGAGGATGGAATAATCAGGTATGATATTAGTAGGAGTGGAGCTGGTTGGGAGATGAGTAATAACAACAACAATATGGTGGATCAAATGTCTTCAATTATTATTAGAGACAATCCGGAGGAGAAGTCTCAGCCTCGGCCTCGAGGTTTGCAGTTCAGAGGAGTGAGGAGGAGGCCTTGGGGGAAGTACGCGGCAGAAATCAGAGACCCGAGCAAAAAAGGAGCTCGAATATGGCTGGGAACTTACCACACCGCCCAAGACGCTGCTTTAGCTTACGATCGAGCTGCTTTTCAGATGCGAGGGGCCAAAGCAAAACTCAACTTCCCTCACATCATTTCTTCTAACAACTACTCATGA

Coding sequence (CDS)

ATGTTGAGCAGCAGCAGCAGCAGCTTGGAAGGGTCGTCGTCGGATTTATTTCATTTGGAGCAGATTCGGCGGCATCTTCTAGAAGATGACTTAGGGAAAGGGAGTACTCATAATAATGTTGAGGATGGAATAATCAGGTATGATATTAGTAGGAGTGGAGCTGGTTGGGAGATGAGTAATAACAACAACAATATGGTGGATCAAATGTCTTCAATTATTATTAGAGACAATCCGGAGGAGAAGTCTCAGCCTCGGCCTCGAGGTTTGCAGTTCAGAGGAGTGAGGAGGAGGCCTTGGGGGAAGTACGCGGCAGAAATCAGAGACCCGAGCAAAAAAGGAGCTCGAATATGGCTGGGAACTTACCACACCGCCCAAGACGCTGCTTTAGCTTACGATCGAGCTGCTTTTCAGATGCGAGGGGCCAAAGCAAAACTCAACTTCCCTCACATCATTTCTTCTAACAACTACTCATGA

Protein sequence

MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSNNNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS

Homology

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BLAST of CsGy3G007220.1 vs. NCBI nr
Match: XP_004134277.1 (PREDICTED: ethylene-responsive transcription factor 1 [Cucumis sativus] >KGN56336.1 hypothetical protein Csa_3G116730 [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 8.3e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60
           MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN
Sbjct: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60

Query: 61  XXXXMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT 120
           XXXXMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT
Sbjct: 61  XXXXMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT 120

Query: 121 YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS 158
           YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS
Sbjct: 121 YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS 157

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BLAST of CsGy3G007220.1 vs. NCBI nr
Match: XP_023539438.1 (ethylene-responsive transcription factor 13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 89/158 (56.33%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 2   LSSSSSSLEGSSSDLFHLEQIRRHLLEDD------LGKGSTHNNVEDGIIRYDISRSGAG 61
           +SS+S+  +GSSS++F LE IRRHLLED+      LGK +      DG+   D    G G
Sbjct: 1   MSSNSNCSQGSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSIDGVT--DTETPGKG 60

Query: 62  WEMSNXXXXMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGAR 121
                         SSI              RGLQFRGVRRRPWGKYAAEIRDP++KGAR
Sbjct: 61  --------------SSI--------------RGLQFRGVRRRPWGKYAAEIRDPNRKGAR 120

Query: 122 IWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISS 154
           IWLGTY TA++AALAYDRAAFQMRGAKAKLNFPH+I S
Sbjct: 121 IWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGS 128

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BLAST of CsGy3G007220.1 vs. NCBI nr
Match: XP_022974259.1 (ethylene-responsive transcription factor 13-like [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 2.9e-32
Identity = 89/157 (56.69%), Postives = 102/157 (64.97%), Query Frame = 0


Query: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDL----GKGSTHNNVEDGIIRYDISRSGAGW 60
           M S+S+ S   SSS++F LE IRRHLLED+L    G G    +++ G    DI   G G 
Sbjct: 1   MSSNSNCSQGSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLKSGDGVTDIEAPGKG- 60

Query: 61  EMSNXXXXMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARI 120
                        SSI              RGLQFRGVRRRPWGKYAAEIRDP++KGARI
Sbjct: 61  -------------SSI--------------RGLQFRGVRRRPWGKYAAEIRDPNRKGARI 120

Query: 121 WLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISS 154
           WLGTY TA++AALAYDRAAFQMRGAKAKLNFPH+I S
Sbjct: 121 WLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGS 129

[Close]

BLAST of CsGy3G007220.1 vs. NCBI nr
Match: XP_022950239.1 (ethylene-responsive transcription factor 1-like [Cucurbita moschata])

HSP 1 Score: 147.5 bits (371), Expect = 3.8e-32
Identity = 90/159 (56.60%), Postives = 102/159 (64.15%), Query Frame = 0


Query: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDD------LGKGSTHNNVEDGIIRYDISRSGA 60
           M S+S+ S   SSS++F LE IRRHLLED+      LGK +      DG+   DI   G 
Sbjct: 1   MSSNSNCSQGSSSSEVFLLEWIRRHLLEDELDLVGGLGKNTPSLASSDGVT--DIEAPGK 60

Query: 61  GWEMSNXXXXMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGA 120
           G              SSI              RGLQFRGVRRRPWGKYAAEIRDP++KGA
Sbjct: 61  G--------------SSI--------------RGLQFRGVRRRPWGKYAAEIRDPNRKGA 120

Query: 121 RIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISS 154
           RIWLGTY TA++AALAYDRAAFQMRGAKAKLNFPH+I S
Sbjct: 121 RIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGS 129

[Close]

BLAST of CsGy3G007220.1 vs. NCBI nr
Match: XP_007204071.1 (ethylene-responsive transcription factor 2 [Prunus persica] >ONI22446.1 hypothetical protein PRUPE_2G129600 [Prunus persica])

HSP 1 Score: 133.7 bits (335), Expect = 5.6e-28
Identity = 78/152 (51.32%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 12  SSSDLFHLEQIRRHLLEDDLGKGSTH--NNVEDGIIRYDISRSGAGWEMSNXXXXMVDQM 71
           +SS+   LE IR+HLL+DD    +T   +  ED    YD + S +    S+    +    
Sbjct: 7   TSSNWALLESIRQHLLDDDFENQATFLVSAAEDDAPLYDCAPSTS--SSSHAHFGVEGWG 66

Query: 72  SSIIIRDNP-EEKSQPR-----PRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHT 131
            +I I D+  + K + R     P G  FRGVRRRPWGKYAAEIRDP K GAR+WLGTY T
Sbjct: 67  DTIAILDHDLDVKVEARVNHAPPSGRHFRGVRRRPWGKYAAEIRDPKKNGARVWLGTYET 126

Query: 132 AQDAALAYDRAAFQMRGAKAKLNFPHIISSNN 156
           A+DA LAYDRAAF+MRG+KAKLNFPH+I S++
Sbjct: 127 AEDAGLAYDRAAFKMRGSKAKLNFPHLIGSHD 156

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BLAST of CsGy3G007220.1 vs. TAIR10
Match: AT2G44840.1 (ethylene-responsive element binding factor 13)

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-29
Identity = 55/73 (75.34%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 84  PRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKA 143
           PR +G+Q+RGVRRRPWGK+AAEIRDP K GAR+WLGTY T +DAA+AYDRAAFQ+RG+KA
Sbjct: 85  PRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKA 144

Query: 144 KLNFPHIISSNNY 157
           KLNFPH+I S  Y
Sbjct: 145 KLNFPHLIGSCKY 157

[Close]

BLAST of CsGy3G007220.1 vs. TAIR10
Match: AT4G17500.1 (ethylene responsive element binding factor 1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-23
Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 75  RDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRA 134
           + +P   +    +G  +RGVR+RPWGK+AAEIRDP+K GAR+WLGT+ TA+DAALAYDRA
Sbjct: 132 KTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRA 191

Query: 135 AFQMRGAKAKLNFPHIISS 154
           AF+MRG++A LNFP  ++S
Sbjct: 192 AFRMRGSRALLNFPLRVNS 210

[Close]

BLAST of CsGy3G007220.1 vs. TAIR10
Match: AT2G33710.2 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-22
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 67  DQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQD 126
           DQ SS+ +    +EKS  R R   +RGVR+RPWGK+AAEIRDP+ K AR+WLGT+ TA++
Sbjct: 52  DQSSSLTL----QEKSNSRQR--NYRGVRQRPWGKWAAEIRDPN-KAARVWLGTFDTAEE 111

Query: 127 AALAYDRAAFQMRGAKAKLNFPHIISSN 155
           AALAYD+AAF+ RG KAKLNFP  I  N
Sbjct: 112 AALAYDKAAFEFRGHKAKLNFPEHIRVN 132

[Close]

BLAST of CsGy3G007220.1 vs. TAIR10
Match: AT5G47220.1 (ethylene responsive element binding factor 2)

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-22
Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 91  FRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHI 150
           +RGVR+RPWGK+AAEIRDP+K GAR+WLGT+ TA+DAALAYD AAF+MRG++A LNFP  
Sbjct: 117 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLR 176

Query: 151 ISS 154
           ++S
Sbjct: 177 VNS 179

[Close]

BLAST of CsGy3G007220.1 vs. TAIR10
Match: AT3G23220.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-22
Identity = 44/61 (72.13%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 89  LQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFP 148
           +++RGVR+RPWGKYAAEIRD ++ GAR+WLGT++TA+DAA AYDRAAF MRG +A LNFP
Sbjct: 12  MKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71

Query: 149 H 150
           H
Sbjct: 72  H 72

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BLAST of CsGy3G007220.1 vs. Swiss-Prot
Match: sp|Q8L9K1|ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana OX=3702 GN=ERF13 PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-28
Identity = 55/73 (75.34%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 84  PRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKA 143
           PR +G+Q+RGVRRRPWGK+AAEIRDP K GAR+WLGTY T +DAA+AYDRAAFQ+RG+KA
Sbjct: 85  PRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKA 144

Query: 144 KLNFPHIISSNNY 157
           KLNFPH+I S  Y
Sbjct: 145 KLNFPHLIGSCKY 157

[Close]

BLAST of CsGy3G007220.1 vs. Swiss-Prot
Match: sp|Q40476|ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum OX=4097 GN=ERF1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-24
Identity = 57/105 (54.29%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 55  GWEMSNXXXXMV--DQMSSIIIRDNPEEKSQPR---PRGLQFRGVRRRPWGKYAAEIRDP 114
           GW   N     V  +Q    I+    E  + P    PRG  +RGVRRRPWGK+AAEIRDP
Sbjct: 64  GWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDP 123

Query: 115 SKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSN 155
           +K GAR+WLGTY T ++AA+AYD+AA++MRG+KA LNFPH I  N
Sbjct: 124 AKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLN 168

[Close]

BLAST of CsGy3G007220.1 vs. Swiss-Prot
Match: sp|Q9LW50|ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris OX=4096 GN=ERF2 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-24
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 86  PRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKL 145
           P+G  +RGVR+RPWGK+AAEIRDP+K GAR+WLGTY TA++AALAYD+AA++MRG+KA L
Sbjct: 98  PKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALL 157

Query: 146 NFPHIISSN 155
           NFPH I  N
Sbjct: 158 NFPHRIGLN 166

[Close]

BLAST of CsGy3G007220.1 vs. Swiss-Prot
Match: sp|Q40479|ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum OX=4097 GN=ERF2 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-24
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 86  PRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKL 145
           P+G  +RGVR+RPWGK+AAEIRDP+K GAR+WLGTY TA++AALAYD+AA++MRG+KA L
Sbjct: 94  PKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALL 153

Query: 146 NFPHIISSN 155
           NFPH I  N
Sbjct: 154 NFPHRIGLN 162

[Close]

BLAST of CsGy3G007220.1 vs. Swiss-Prot
Match: sp|Q84XB3|ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum OX=4081 GN=ERF1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.7e-23
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 85  RPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAK 144
           +P+G  +RGVR+RPWGK+AAEIRDP+K GAR+WLGTY +A++AALAY +AAF+MRG KA 
Sbjct: 101 QPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKAL 160

Query: 145 LNFPHIISSN 155
           LNFPH I  N
Sbjct: 161 LNFPHRIGLN 170

[Close]

BLAST of CsGy3G007220.1 vs. TrEMBL
Match: tr|A0A0A0L893|A0A0A0L893_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116730 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 5.5e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60
           MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN
Sbjct: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60

Query: 61  XXXXMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT 120
           XXXXMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT
Sbjct: 61  XXXXMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT 120

Query: 121 YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS 158
           YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS
Sbjct: 121 YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS 157

[Close]

BLAST of CsGy3G007220.1 vs. TrEMBL
Match: tr|M5WET5|M5WET5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G129600 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.7e-28
Identity = 78/152 (51.32%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 12  SSSDLFHLEQIRRHLLEDDLGKGSTH--NNVEDGIIRYDISRSGAGWEMSNXXXXMVDQM 71
           +SS+   LE IR+HLL+DD    +T   +  ED    YD + S +    S+    +    
Sbjct: 7   TSSNWALLESIRQHLLDDDFENQATFLVSAAEDDAPLYDCAPSTS--SSSHAHFGVEGWG 66

Query: 72  SSIIIRDNP-EEKSQPR-----PRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHT 131
            +I I D+  + K + R     P G  FRGVRRRPWGKYAAEIRDP K GAR+WLGTY T
Sbjct: 67  DTIAILDHDLDVKVEARVNHAPPSGRHFRGVRRRPWGKYAAEIRDPKKNGARVWLGTYET 126

Query: 132 AQDAALAYDRAAFQMRGAKAKLNFPHIISSNN 156
           A+DA LAYDRAAF+MRG+KAKLNFPH+I S++
Sbjct: 127 AEDAGLAYDRAAFKMRGSKAKLNFPHLIGSHD 156

[Close]

BLAST of CsGy3G007220.1 vs. TrEMBL
Match: tr|A0A061DUI1|A0A061DUI1_THECC (Ethylene-responsive element binding factor 13, putative OS=Theobroma cacao OX=3641 GN=TCM_005705 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 0


Query: 52  SGAGW----EMSNXXXXMVDQMSSIIIRDNPEEKSQPRPR------GLQFRGVRRRPWGK 111
           + +GW    E+ N     V+++ S   R+  +E+S+  P       G+ F+GVRRRPWGK
Sbjct: 85  ANSGWSPSNEVDNYTPVAVEELVSTTTREIEKEESKVEPETSVPPSGMHFKGVRRRPWGK 144

Query: 112 YAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNY 157
           YAAEIRDP + GARIWLGTY T +DAALAYDRAAF+MRGAKAKLNFPH+I SN +
Sbjct: 145 YAAEIRDPKRNGARIWLGTYETPEDAALAYDRAAFKMRGAKAKLNFPHLIGSNTW 199

[Close]

BLAST of CsGy3G007220.1 vs. TrEMBL
Match: tr|A0A2P5AYA7|A0A2P5AYA7_9ROSA (AP2/ERF transcription factor OS=Trema orientalis OX=63057 GN=TorERF18 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.1e-27
Identity = 76/156 (48.72%), Postives = 93/156 (59.62%), Query Frame = 0


Query: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60
           M  S + SL  + SD   L+ IR HLLEDD     T       +    IS        S 
Sbjct: 1   MSRSRTRSLIMTDSDYALLDSIRHHLLEDDFNFNPTATLFAPSLDINSISXXXXXXXXSG 60

Query: 61  XXXXM-VDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLG 120
                 V Q++     ++    +     G +FRGVRRRPWGKYAAEIRDP K GAR+WLG
Sbjct: 61  RDAGTPVRQLNEAEETEHHVPTAASDEVGTRFRGVRRRPWGKYAAEIRDPKKNGARVWLG 120

Query: 121 TYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNN 156
           TY TA+DAALAYDRAAFQ+RG+KAKLNFPH+I S++
Sbjct: 121 TYETAEDAALAYDRAAFQIRGSKAKLNFPHLIGSDH 156

[Close]

BLAST of CsGy3G007220.1 vs. TrEMBL
Match: tr|A0A1U8KPZ0|A0A1U8KPZ0_GOSHI (ethylene-responsive transcription factor 13-like OS=Gossypium hirsutum OX=3635 GN=LOC107919633 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.1e-27
Identity = 65/113 (57.52%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 52  SGAGWEMSNXXXXMVDQMSSIIIRDNPE---------EKSQPR-PRGLQFRGVRRRPWGK 111
           + +GW  SN      + +  +++    E         E + PR PRG+ F+GVRRRPWGK
Sbjct: 109 ANSGWTPSN-EVTAAEAVEEVVVSSGEEKEGIVNVERETNAPRPPRGMNFKGVRRRPWGK 168

Query: 112 YAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSN 155
           YAAEIRDP + GARIWLGTY T +DAALAYDRAAF+MRGAKAKLNFPH+I SN
Sbjct: 169 YAAEIRDPKRNGARIWLGTYETPEDAALAYDRAAFEMRGAKAKLNFPHLIGSN 220

The following BLAST results are available for this feature:

BLAST of CsGy3G007220.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134277.1	8.3e-80	100.00	PREDICTED: ethylene-responsive transcription factor 1 [Cucumis sativus] >KGN5633...	[more]
XP_023539438.1	1.7e-32	56.33	ethylene-responsive transcription factor 13-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974259.1	2.9e-32	56.69	ethylene-responsive transcription factor 13-like [Cucurbita maxima]	[more]
XP_022950239.1	3.8e-32	56.60	ethylene-responsive transcription factor 1-like [Cucurbita moschata]	[more]
XP_007204071.1	5.6e-28	51.32	ethylene-responsive transcription factor 2 [Prunus persica] >ONI22446.1 hypothet...	[more]

BLAST of CsGy3G007220.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44840.1	2.8e-29	75.34	ethylene-responsive element binding factor 13	[more]
AT4G17500.1	1.3e-23	60.76	ethylene responsive element binding factor 1	[more]
AT2G33710.2	3.3e-22	61.36	Integrase-type DNA-binding superfamily protein	[more]
AT5G47220.1	4.3e-22	71.43	ethylene responsive element binding factor 2	[more]
AT3G23220.1	5.6e-22	72.13	Integrase-type DNA-binding superfamily protein	[more]

BLAST of CsGy3G007220.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9K1\|ERF99_ARATH	5.0e-28	75.34	Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana OX=3702 GN=E...	[more]
sp\|Q40476\|ERF1_TOBAC	2.0e-24	54.29	Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum OX=4097 GN=ERF1 ...	[more]
sp\|Q9LW50\|ERF2_NICSY	4.4e-24	71.01	Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris OX=4096 GN=ER...	[more]
sp\|Q40479\|ERF2_TOBAC	4.4e-24	71.01	Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum OX=4097 GN=ERF2 ...	[more]
sp\|Q84XB3\|ERF1_SOLLC	3.7e-23	68.57	Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum OX=4081 GN=ER...	[more]

BLAST of CsGy3G007220.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L893\|A0A0A0L893_CUCSA	5.5e-80	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116730 PE=4 SV=1	[more]
tr\|M5WET5\|M5WET5_PRUPE	3.7e-28	51.32	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G129600 PE=4 SV=1	[more]
tr\|A0A061DUI1\|A0A061DUI1_THECC	1.4e-27	56.52	Ethylene-responsive element binding factor 13, putative OS=Theobroma cacao OX=36...	[more]
tr\|A0A2P5AYA7\|A0A2P5AYA7_9ROSA	4.1e-27	48.72	AP2/ERF transcription factor OS=Trema orientalis OX=63057 GN=TorERF18 PE=4 SV=1	[more]
tr\|A0A1U8KPZ0\|A0A1U8KPZ0_GOSHI	4.1e-27	57.52	ethylene-responsive transcription factor 13-like OS=Gossypium hirsutum OX=3635 G...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G007220	CsGy3G007220	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G007220.1.CDS.1	CsGy3G007220.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G007220.1.exon.1	CsGy3G007220.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G007220.1	CsGy3G007220.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 130..150 score: 56.97 coord: 91..102 score: 65.91
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 90..154 e-value: 1.4E-35 score: 134.2
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 91..140 e-value: 2.2E-12 score: 46.9
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 90..148 score: 23.156
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 90..149 e-value: 3.92431E-28 score: 99.6534
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 90..150 e-value: 9.2E-32 score: 110.7
None	No IPR available	PANTHER	PTHR31190:SF41	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13-RELATED	coord: 59..152
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 59..152
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 91..149