CsGy3G005580.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy3G005580.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
LocationChr3 : 4514376 .. 4521004 (-)
Sequence length222
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGTGAGAGTGCGTTCTATGCAAAGTTTAATAATTAAATAAAATAAAGTTTAAAAATGGAACATATAAAACAAAATGGAACATACCGATAAAAAAGAGGGTCTAAAATAGGACTATAACTTAATTTAAATTTCTCTATGAATTAATTTATACATGTTTGTGATTTAAAAATAAAATAACACTCAATTGTAGATGTGGGGAGAAGTACTTAGAAATTTGTATATTATATAGGAATATTATATGTTGTATCAGACTTTTTCAACAAAGAAAAAACAATTCCTTTTAATAATTCAAAGTATGTTAAATCTTGAATCTAATTATAATTTATGACAATTTTAAAAATAATAATTAAGTATATAGTAATATTTTATAAAAAATTATAAATATAACCGAATCTATTGGTGACAGACTTTTATTGCTTATAGACTCTTATGGTTATTTGCAACATGGATTATCAATGATAGACATTGATAGATTTTACTATATTTGTAAATTTTTTAAAATGTTATTATATACTTAATTACTTTGAATCTAACTACTATATTTGCAACTATTCATTTAATAAATGAGCGATAAATTTTAGATCAATCACAAATTGTCACGTGATTTACCAAATTAATTATGAAAATACAGGTAATTAAATTTGAGAAAAATTAAAATTTGATATGTGAAACTCAAGTTATTTGGAGATACAAATATTCTTCAAAGACTTCAACTTCAAGAAGATTAAACACTCTTCATCCATACATCAAGTGCACTCATTCAACTGAGAGAGAATCAGAGGGTCAGATATACTAAAAATCGAATCACATCACATCAAATCAATATAAATACAACATATAAACACAAGTCCAACTCCATCACGTTTCTCCGAAAACCTCGTGTGAACCGTGATAATCGATATGTACACTTTTTGTTAAAAATTTGTTGTAAAAAATAAATGTATTATATCATAAAGAAATGAAAAACACAGTTTTATTTATGGTCGTGGTCAATGCACTAAAAAGACCATTTCATTAGAGGAAATGGAATTATTCTACCACACATCCTCTTTATCAATTATTAAATCAAACATTAAATCCATTTGGCTTTGTGTTACAATAACACAGGGAGATCATTTTAAAATTCAAACCAATGAAAAGTACAAAGCTGGTAATGACAAATATTTGAACACTTGTGATTGGCCAACACATTGAACTTTAGGCATTACCCATATGAAAAGTATATAGCTTTTTCAATTAGAAAAACAAACTCAAGCCAATTGGACAAATTTAAGCAATAGTTGAACCCATCCAATAACATACGTCCTCTGCTATCATATAAAGGAATAATAGACTAAGTAAAAATTTTCAAATAATTCAAATCCAAATTGCACCAACCAATTGAAGCAGAAGACATCAAGCTTATTGAACTTTAAGAGTCTCAAATACATCGTTGTTGTGATCCACGATCCTTAAAATCTCATAGTCATTCATTATACCATTTTCATCATGTCTTCAAACATACATTGAATATTGTAATTGAAATTCACATCAGTAAGTTTAGTATGTCAAATATAGTATATTTTACATATACATTACTCAGCTCATCAATAAAGTACTCAAACCATAAACTATATAGAATTCAAATACATAGTTCGTAGAAATTTCAAGTCACTGACGTTAATAAACAGATACAATTTTTTTCATAACAAAAAAATATACATATCATTGAAGACAATATAATCTATTTCATGCAGTTAGAGTTTCAAATTCACTGTAATTGTGATCCATAATCCTTAAAATCTCAGTCATTCATTATACAAACATATTCCAATCATTCGGTACTATATCATTTTCATCATGTCTTCTTCTTTTTTCTTTATTTCATCATATATGATTTTCTCATCGATTGATCTGATCAGTCTGTTTATTTTCTCATCAACATCCTCTGTGCCCTATTACAATTATTGTACACATTTTAGTTTCGAAGATTTATTCTAAACAGTTTCAACAGGTTGTGATCAATAGGTTGTGTCTTAATCTATATCATGATCACATATTCAAAAATATATTTTTTTTCAATCCAAAAATCTTAACAATAAGATTGATTCTTTACCAAACCAACAATACGAACAATTTCTTAAATAGTGTCATTGAATCATAATCATTGTTGTTTAACTAACCAAACTTTATAATAACCAATAGAATTAAGATTTCTCAAACATAGTATATATCGAGTATGAATGATGTTATAAACAACATATTCTAGACACACACACAAAGGTAAAAAATTTGATCATCAAGATGTAGTATAATTCCTTTAGGTACAGGACAATCCACATATTCCAAATACAGTCTATTTCAATAGGTCAAAAAGTGAGACATATGATATTGAAAATAACATAAATTCTTTGTAAACAACATTCAATTTTGGTAAATCTTAACTAAATCTGCTACTTTGTTGCTAGACAAAATTACAACCTCCTCCCTTATAACAATGATCAATATATAGATTTTCGGCTTTTTATATTATAAACAATTTATTAAATAATACATAATATAATTTTAATAACAATTTGCATTTAAATTGTAAATCCTCGTATCAAATATAAATACAAGATTTTCACCTTTAAAATGTTTTAAACAATATATAATATATTTTTAATAACAATTTAAAATATATTAATTATTCAATACATCAATTCAGTTCAGCACCCAACACCAAACAACAAAAATAGAAAAGAATCAATAACTTAAATTATTAAATTCGAACAATCGGGAATGGAGCCTATCAAAGTTGTTCAACTTGAACATTCAATCAGAACCTATATTGCAACCGTCTAATGTTTGCAATTTCGTTGTCATATCAATTAAGATCAAATAAGTAGGATGATAGAAGGGTCGAGCGACGTTTCCGACAAGTTTCACAGCGTTTTCAGCAAGTTTCACAGCGTTTTCAATGAGTTTCACGGGTTTAGCCACAGGTAGGAGGAAGAAATTGAAGTTTTTTAAGGTTTTGAATGATTCGAAGAAGTTGAAGGTTTTCGGTGGAACAAACTTTGAAGATAGCAAACAAAATATTTTGGAGAAGTAGAACTCAAGTGACCGAAAGACCTTTTAAAAGTTTTCAAGGTTTCAAAACGTGAAATTAATAGGAAGTTCAAATAAACCCCAAATACCATATAATTTCAATGCATGCACGATTTGAAGGAGATGTGTTTGCAGAGCTTAAGTGAAACTTCTATAGTGATATGTGTTATTTTTAATTAGTTTTTGGAAGAAATTAGATTTTTCATAGGTTTAATTGTGTGTATATGATGTTTTATTTAATTGTATGGTATTTGGGATTTATTTGAACAATTATATTTAGGATTGGAGTTTTTAACTTAGAGCATTTAGAAATATATTTACTATTCATCAAAACTAAACCTCACAGCCATTTCATATTGGTAGAGGTGCCAAAGCATTTGAACTTGGTGTGTCAATGGGCTGCACTTAAACCACATATTCTGGTCCAAAATCCATTTCTAATTGGGAGTCAAATAAAACGTTTCATTTTGAAAAATAAAAAAAATAAAGAAAATTAAATCTAGAAAACTTAGCAAAGTGATTTTTACGGTTATTAATTATAAATTAATAATTTACCAAAATATCCCTACTTAAAATCTTAAAAAATTTAGATTTTGAGATTTTTTATTGTAATTAAAGTAGATTTTTTTAAAATCCTATTAAAATAGGGCCTTTTTTAAAAATTAATAAGTCAACAAAATATTTATACTATATAGAACAATTTTGAAAACGAAAAAAGTTCGTAGGCCTACAATGAAAAATGCAAAAAATACTTCAGTTAACACGCAATTAATTGGCCACACTCGCCATGTAATTCTTCTTTTTAATGATAATGATACGCGGTCGTGTAAGAAATAATATATGATCGTATAGGTAGTATCAATACAATCGTGTAGATCTTTTTAACGATGAAAAAATGTTTCAAATCTAAACGATTTTGTTGACCACGCTAAATGATCGTATTAACTATGGTAAGTGATCGTTTACATCATATCCACACGATCGTGTAGTTTTTTTAAAACGATGGGAAAATAGCTTCAAATCTAAACGATCGTGTTGACCATGCTAAACAATCGTGTTGACTTAGTAAGCGATCGTTTCAATCATATCCACAAAATTGTGTAGTTTTTTTTAAACAATAGAAAAAAGGTTCCAAACCTAAACGATCGTGTTGATCGACCATGCTAATTAATGATCGTGTTGACTTAGTAAGCGATCAATAAAAAAGGTTTCCACAAATAGGATTTAATAGATATTGGACAACCAATTTTCAACATGATCATCCCCACCATAAATACCTTGTACTAATTGAGATAAAAATAACTATTAGTCATATATACCTTACATTGAAAGAAATAACTAAACACACTTTACATTGTATTCTTAAAATATTTTTAAAATATAGTGTTTCTCAAAGAAAAAAGGTTTGACAAAGATTAAGAATAAAACCAATTGATTAGTACAAAATACTTTAATTATCAATTTTATTGGTGCACGATTAGCTTTTAAATCAAGAGGTAGGCACATCGCTCATGAACTTAAAGTTGAGAGCCAAATGAGAAAAGAATTAGTCCACGTAGAAGGAGAACAATAGCTTAGAGCATGAGAAGCTTATTAACTTCAAAAGGTATAATATAACACACTTGTTTAGAACTCTCAATCCGAGAAAAACAAATTTGACGAAGAAATTCACACCTGAAGAGCTTGGATGGTTCCCATTTCTAGAAATGAAACTCCAAAATCATGAGAATGATAATTTTTTTAAAAAAATTACAACGTTTTTATTATATTTGCATAATTTGGTTTGGTTTAACACGAGAACCAACATTATAAAAAATTATAGATTTTGGCAAATACCTTGTATAAGAAGGATTTGAAATTTTGTGGTAGTCCCACTCAGTCCCATCATAAATGAATAATATATTCCATATACTTTCATCAATTGATAATATCGTAGGAAATTCACATCTCTTAATCATCATCTTCCTATCTTCCTTTCTTCCTCATATATACATAGGTAGCACATTGGGCTTTATACAACAAGTTGATACTTCTCCCCACGTATGAAGATGAACTCATATCTTAACTTTAACCTAAACTTTTCCATTGTTAGCCAATAAATTTAGAGAAATTTCATCAAATGACAAAAACATTTAGAAAAAAAGCATCTCATAACACCTATTTTTTTTTTTTTTTGCATATTGCGAATATGAAAAAATTAGTGATATATATCCGATGATAATCATAGGACTATCAAACGGTAATCATAGAGTTATCGACTTTAAATTTGCTACTTTTGCAATTTATAACATGTAGTAACATGAACCCTATTATCATAATTTTTTTTGCTATTTTTGCAAGGGCCCTATAAATTTATAAACTCACATTTATGCTCATACCTTAATCCCCATTTCATCTATTTGTAGTTGGATCTTTCCTTTAATCATTGAGACTATAGTCGCAACATCTTCATCCCAATTGTCTAGAATCATTCGCAAACACAACTTGGCCTTGTCGATAAAAAAAATTTAATGATTCTACCTAGCGTTTCATTCAGTCTTCACAATTCATCATCTTATAACTAAATCTATCTTATAACTAAATCTTACTAGATTGTCATCCCATTTAAGATTTGAATTCATATCTATTTATTTTTTTTTTGTAAAAATCATTTAAGTAAAAAATTGATGAGTTAAAGAAAAAAAGAATGCATGACACTTGTGGAAAATGTGAAGATTCATAATTTTTTTATGGGTAAGGTTGGATTGTGTTTGCAAAGGATCCTTATGAGGTGATTGAGATAAAGACGTTGCAACTTTAGTTTCAAGGATTAAAGAGGTCATCTGATTGCAAATATATGAAATGACGATGAAAATGAGGATTAAGGTATGGACATAAGTGTGAGTTTGTAACCTTATTGGCTATAAATTGAAAAGCTTGGATTAGAGCAAGATACACTATAAGAAATTCTAGATCTCTCAATGCTGCTTTACACCTTCGAGAGAGATGACATTGAGAGATAAGGCATCTCCTGACGCATCCAATATCTTTCGATGCATGCTTGCATGCATCGGGAGACAAAAGATAACTCCTGACGCTTTTTAGGTAGCATCGGTAAATAGAAGGGAATTGTTGATGCTTTATTAAAAGCATTAGTAGTTGTTGAATAACTCCCAATGCTTTTTAGGCAGCGTCGACAGTTGTTCTTCAAAACTCTTATTCTTCAGATGCCATTGTTTTTGTTTCTTCACATCGTAAAATATCATCCTCTTCTTCTTTTTTTCTCCTTTTTTCTCATCTCAATCTTAGTCTCTTCAAAGAAGCAGGAGTAGAATCCAGAACTCGGAGGTTGAGTGGTGTCTTTGTGAGGTGAAAGATCGGATATGGGAAGTTATCAAGGAGCTACAACAGCGACAACAAAAAGTAGCAACGTGTGGATCTCATTATCATCAGAATCGGGAACATTTGTGGCTAATGCTATTGGTAACCTATGCCAAACTAATTTCCTTCTCTCTTATGGTGTTAGAGTTTGTTTTGGTGTTAGAAATGTATCACCAAATCCTGTATCCGAATGA

mRNA sequence

ATGAAAAATGTGGGGAGAAGCATTACCCATATGAAAACGTCGACAGTTGTTCTTCAAAACTCTTATTCTTCAGATGCCATTGTTTTTGTTTCTTCACATCAATCGGGAACATTTGTGGCTAATGCTATTGGTAACCTATGCCAAACTAATTTCCTTCTCTCTTATGGTGTTAGAGTTTGTTTTGGTGTTAGAAATGTATCACCAAATCCTGTATCCGAATGA

Coding sequence (CDS)

ATGAAAAATGTGGGGAGAAGCATTACCCATATGAAAACGTCGACAGTTGTTCTTCAAAACTCTTATTCTTCAGATGCCATTGTTTTTGTTTCTTCACATCAATCGGGAACATTTGTGGCTAATGCTATTGGTAACCTATGCCAAACTAATTTCCTTCTCTCTTATGGTGTTAGAGTTTGTTTTGGTGTTAGAAATGTATCACCAAATCCTGTATCCGAATGA

Protein sequence

MKNVGRSITHMKTSTVVLQNSYSSDAIVFVSSHQSGTFVANAIGNLCQTNFLLSYGVRVCFGVRNVSPNPVSE
Homology
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BLAST of CsGy3G005580.1 vs. TAIR10
Match: AT5G51150.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein)

HSP 1 Score: 40.0 bits (92), Expect = 7.1e-04
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 0 

Query: 19 QNSYSSDAIVFVSSHQSGTFVANAIGNLCQTNFLLSYGVRVCFGV 64
          Q S +  +   +  H   + VANAIGNLCQ +FLLSYGVRV  G+
Sbjct: 51 QRSAARGSHAELCDHADVSCVANAIGNLCQ-SFLLSYGVRVGIGI 94

The following BLAST results are available for this feature:
BLAST of CsGy3G005580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsGy3G005580.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51150.17.1e-0451.11Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family... [more]
BLAST of CsGy3G005580.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G005580.1 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G005580CsGy3G005580gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G005580.1CsGy3G005580.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G005580.1.CDS.5CsGy3G005580.1.CDS.5CDS
CsGy3G005580.1.CDS.4CsGy3G005580.1.CDS.4CDS
CsGy3G005580.1.CDS.3CsGy3G005580.1.CDS.3CDS
CsGy3G005580.1.CDS.2CsGy3G005580.1.CDS.2CDS
CsGy3G005580.1.CDS.1CsGy3G005580.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G005580.1.exon.5CsGy3G005580.1.exon.5exon
CsGy3G005580.1.exon.4CsGy3G005580.1.exon.4exon
CsGy3G005580.1.exon.3CsGy3G005580.1.exon.3exon
CsGy3G005580.1.exon.2CsGy3G005580.1.exon.2exon
CsGy3G005580.1.exon.1CsGy3G005580.1.exon.1exon