CsGy2G022050.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G022050.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	exosome complex exonuclease RRP46 homolog
Location	Chr2 : 30499361 .. 30502371 (+)
Sequence length	741

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATAGACAGAGATGATGGTCGTACCCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGTCTCTCCATCTTCCACCGACTTCTCTTACTTCTTGCTTTATTAGTTTATGAGCTGGTTTAATTTTGGGAAGTTGTGTTATTTTTCACTGAGTAAGTTTGTTTATCTTGGACTGTGTAGGTGATACGAAGGTTCTTGCTGCTGTCTATGGACCTAAAGCTGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCTAAGACAGGGCAAATTGGTAAGCTTCATGTCTTTCTCCATCTCTGATTCCTATGATAAAATTTCCATTTCCTGAGCTTACTAGTTAATGGCATTGGTAATCTGGTTTTCTTCGCACGCAGTTTACTATTTTGTGTTACAGTTGTATTGAAAACAGCTGATGATATTCTTTGAATGTTCTTGAACCATTTCCTATTTGTTTATCATTACACATTTTATGATGTGTTAGGAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACATTGCAGAGTATTTGCATATTAACTACTAATCCCAATACCACCACATCTATTATTGTTCAGGTAAGTCTTACCTTTTTCCCGTTTTTGATGCAAAATGCATTTGATTTCGTGATATGCTACATGTAGTCGTCTTCTTTTGTTCCTGTTCTAAAAACTCTATAGTGCTTGCTCCATGGTGATTTTTTAAAGCGTATTTAACATACATCCAATAGGCATCTCAAAATGTTGTGGATGGTAAGCAAGTTGTAACCCAAGACAAACGATCCTCAACATTCAATTTTCAAATTTATGTTATAGTTATTCAGTTTTATAGTCGTGAAAAATATCATTCTTTAGAGAATTCTTTCTATTCCAATGTTCCTTATAGTCCCATCCAACCCAAGTTTTCTGATTTTTGCTATACTACTCCCGACATGGGCATTTACATAGCGCCACGGCATGTTAATCATTTTGTTTTTCATGTGAAACTTCAAACAACTTGGGAAATAATTAGCCGCAGTATGCTATTCTGTTATTGAGCCTATGTTTATGGAAAGTGGAAATATTCTTAAACCTTTAAGGAGACCTTTATTTTAAAATTGTCGCTGATGGAAATTGGTCCAACATTTGTTCCTTCCCACATCATATTATCATAAAAAATGTTTTGGACTGAACTTTGAAATACATTACATTTAACGCCTTTTCATTACTTTTGCTGCAAACTAGTTTCTTATCTCAAATACATTGATGTTTCCCCCCATAATTGCAGGTTATTCATGATGATGGAGCTGTATCCCTTGTAATTTTATACCTTTTTTTGTAGATTACTAAAGATAATTTTAGGAGAAAACATATGTTACTTACGACACATATAAGTCATTTCATTATGATTCTATTCTGTCCAACTCCTCGCACATACATTAGGGTTGCTGAACCTACCATACTATATAAGAAATTATTCATATTAATATAACCATGGGAATTTACTGTTGGCCCAAGGAAAAAGGATGAACTAGTGCTTACTTACCAATATACTACACACAATTTTCTTATAAATTTGGAGTGCTTTGCACCCTTCTTAAAATATCTTCAAGAACTTCTTTAACAGACTTCTCAAATAGCTTCTTCCTTGTGCTATTAACGCATCATGTGCTGCCCTTGTAGATGCCGGAATTCCTTTAAAGCATCTTGCTGGTAATTAAGTTTTATGGTCTTATTATTTATGGTCTTATTATTTATGTCTTCACCTGATAAAGGAAAGATTGGCACTGACTGCTCTGCTCTCACCTGATAAAGGAAAGATTGGCACTGACTGCTCTGCTCTGTAAATACAGTTGCGATTTCGTGTTGTTTGTCTGAGAATGGATATGTTATTTTGGATCCAACCAAGATAGAGGAGGAGGTCAGTACTTCACTTTTATTTAATTTATAATACCGTTTGTGGCAGTGCTTGTCCAATTTTGCTGTTTACATTTTTATAAGCATAGAAATGGTATACTGGTCTTAGCAGGGGTTAGGTAAGTAGTTCCAGATTATTAAATTTCTCAAAGAAACCGGGGAAGAGTGAAAATGGTTGAGTTTGATTACTAATCAAGTGAGTTTTGAAGAAAAATGAATTTGAAATTGCAGAAAATGAAGGCCTCTGTGCATTTGGTCTTCCCAAATGCACCTGTCTCAGTAGTTCCTGAAGGATCTACACAAGGTGTAGGTGAACCACTGGAGCATGGAATAATCACATCTGTAACTCAGGGTGCAATGTCAGGTATTTTGTCACAAAACATAGCTATTTTCCTCTGGTCGTAATTAAACTTACACGTCTGTTCTGAGTTTTAATAGATTTTTCATTTTAGAATTTCTGTGACTCAACAAGCTTAAACTGAATGTTCATTTCTATATCATATCATGTTAATAATCACATGCTATTATAGTAAGATTACGCATGTCACTATGGTTAAAGTGCTCTTATACTATATGCTCGAGTCACCAACACATTTTGGACAAATTTCTTTTCCTATTTTTTTTTATTCTAGATATATTTTCACTCTCTTGACACTGTAACACAGTCCTTAGATGGACATAATAGATTATTAATTCTCCATGGTTAGGCACACTTCTCTCATCATGCCATGTTTTTCTTTGTAACGTTGTGTTGTGTTTGAAAATGGATTGGGATCTTGTTATAGCATCAAAGGTCAAAACTAGTACAGTTATTCTCCTCTTAGTACAGTTATTATCCTCTGATTGCTTATGGAATCTGAAAAAGTGTGAATGTTAGATGGAAAAATAAGAGTTGGGATCTAAGTTTGTTGTCGTTTAATGTTTAAAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCTACTACAAAAATGTCTGCTTTTCTGAGGAGAAGTTTGCAGCCCCAACTCCCAATGGATTCCTCAAAAGCTGGCTGA

mRNA sequence

ATGGAGATAGACAGAGATGATGGTCGTACCCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGTGATACGAAGGTTCTTGCTGCTGTCTATGGACCTAAAGCTGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCTAAGACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACATTGCAGAGTATTTGCATATTAACTACTAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCATGATGATGGAGCTGTATCCCTTCTTCTTCCTTGTGCTATTAACGCATCATGTGCTGCCCTTGTAGATGCCGGAATTCCTTTAAAGCATCTTGCTGTTGCGATTTCGTGTTGTTTGTCTGAGAATGGATATGTTATTTTGGATCCAACCAAGATAGAGGAGGAGAAAATGAAGGCCTCTGTGCATTTGGTCTTCCCAAATGCACCTGTCTCAGTAGTTCCTGAAGGATCTACACAAGGTGTAGGTGAACCACTGGAGCATGGAATAATCACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCTACTACAAAAATGTCTGCTTTTCTGAGGAGAAGTTTGCAGCCCCAACTCCCAATGGATTCCTCAAAAGCTGGCTGA

Coding sequence (CDS)

ATGGAGATAGACAGAGATGATGGTCGTACCCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGTGATACGAAGGTTCTTGCTGCTGTCTATGGACCTAAAGCTGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCTAAGACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACATTGCAGAGTATTTGCATATTAACTACTAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCATGATGATGGAGCTGTATCCCTTCTTCTTCCTTGTGCTATTAACGCATCATGTGCTGCCCTTGTAGATGCCGGAATTCCTTTAAAGCATCTTGCTGTTGCGATTTCGTGTTGTTTGTCTGAGAATGGATATGTTATTTTGGATCCAACCAAGATAGAGGAGGAGAAAATGAAGGCCTCTGTGCATTTGGTCTTCCCAAATGCACCTGTCTCAGTAGTTCCTGAAGGATCTACACAAGGTGTAGGTGAACCACTGGAGCATGGAATAATCACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCTACTACAAAAATGTCTGCTTTTCTGAGGAGAAGTTTGCAGCCCCAACTCCCAATGGATTCCTCAAAAGCTGGCTGA

Protein sequence

MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSSKAG

Homology

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BLAST of CsGy2G022050.1 vs. NCBI nr
Match: XP_004150286.1 (PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus] >KGN62820.1 hypothetical protein Csa_2G374620 [Cucumis sativus])

HSP 1 Score: 478.8 bits (1231), Expect = 1.1e-131
Identity = 242/246 (98.37%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM
Sbjct: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240

Query: 241 DSSKAG 247
           +SSKAG
Sbjct: 241 NSSKAG 243

[Close]

BLAST of CsGy2G022050.1 vs. NCBI nr
Match: XP_008445020.1 (PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis melo])

HSP 1 Score: 474.9 bits (1221), Expect = 1.6e-130
Identity = 240/246 (97.56%), Postives = 241/246 (97.97%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPN PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           VVPEGSTQGVGEPLEHG+ITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQL M
Sbjct: 181 VVPEGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSM 240

Query: 241 DSSKAG 247
           DSSKAG
Sbjct: 241 DSSKAG 243

[Close]

BLAST of CsGy2G022050.1 vs. NCBI nr
Match: XP_022951618.1 (exosome complex exonuclease RRP46 homolog [Cucurbita moschata])

HSP 1 Score: 454.5 bits (1168), Expect = 2.3e-124
Identity = 227/246 (92.28%), Postives = 236/246 (95.93%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           V+PEGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP 
Sbjct: 181 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240

Query: 241 DSSKAG 247
           DSSK G
Sbjct: 241 DSSKVG 243

[Close]

BLAST of CsGy2G022050.1 vs. NCBI nr
Match: XP_023002484.1 (exosome complex exonuclease RRP46 homolog [Cucurbita maxima])

HSP 1 Score: 453.4 bits (1165), Expect = 5.0e-124
Identity = 227/246 (92.28%), Postives = 236/246 (95.93%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           V+PEGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP 
Sbjct: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240

Query: 241 DSSKAG 247
           DSSK G
Sbjct: 241 DSSKVG 243

[Close]

BLAST of CsGy2G022050.1 vs. NCBI nr
Match: XP_023538111.1 (exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 451.1 bits (1159), Expect = 2.5e-123
Identity = 225/246 (91.46%), Postives = 236/246 (95.93%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           V+PEGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP 
Sbjct: 181 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240

Query: 241 DSSKAG 247
           DSSK G
Sbjct: 241 DSSKVG 243

[Close]

BLAST of CsGy2G022050.1 vs. TAIR10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 372.1 bits (954), Expect = 2.7e-103
Identity = 182/246 (73.98%), Postives = 211/246 (85.77%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNTTTS+I+QV+HDDG+   LLP
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPN  +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           V+PEGS+   GEP+EHGIITS+T G MSVDDY  C+E GRAAT  +SAF R++ Q     
Sbjct: 181 VLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----Q 239

Query: 241 DSSKAG 247
            SSKAG
Sbjct: 241 SSSKAG 239

[Close]

BLAST of CsGy2G022050.1 vs. TAIR10
Match: AT2G07110.1 (BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6))

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-19
Identity = 56/113 (49.56%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 24  LNRAHGSASW-SQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTG----------- 83
           LN  HG+ S+    DTKVL+A YGPKA TKKNEN EKA ++     K             
Sbjct: 10  LNGIHGTLSFIFSEDTKVLSAQYGPKARTKKNENAEKACLKSYGSLKPDRLVIVNAFSFS 69

Query: 84  ------QIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLL 119
                 ++ K+E+E E ILKRTLQSIC+L   PNTTTS+I+QV+HD G+VS L
Sbjct: 70  ERGLFCRLRKVEKEYETILKRTLQSICVLRVVPNTTTSVIIQVVHDGGSVSFL 122

[Close]

BLAST of CsGy2G022050.1 vs. TAIR10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-14
Identity = 53/176 (30.11%), Postives = 89/176 (50.57%), Query Frame = 0


Query: 5   RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
           R DGR  N++R +     V+++A GSA +  G+TKV+AAVYGP+    K++  +     V
Sbjct: 10  RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69

Query: 65  IWKPKTGQIGKLER----------ECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA 124
           + +    Q    +R          E  +++++T+++  +    P++   I +QV+  DG 
Sbjct: 70  LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGG 129

Query: 125 VSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASV 171
                   INA+  AL DAGIP++ LAV+ S     N   +LD   +E+    A V
Sbjct: 130 TR---SACINAATLALADAGIPMRDLAVSCSAGYL-NSTPLLDLNYVEDSAGGADV 181

[Close]

BLAST of CsGy2G022050.1 vs. TAIR10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 61/236 (25.85%), Postives = 108/236 (45.76%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE-- 60
           ++  R DGR  +Q RP       ++ A GSA    G+TKV+ +V+GP+   K     +  
Sbjct: 30  LDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVG 89

Query: 61  ----KASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA 120
                 S      P  GQ G   +E   +L + L+ + ++ T P TT  +   V+   G+
Sbjct: 90  RLNCNVSYTNFASPTLGQ-GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 149

Query: 121 -VSLLLPCAINASCAALVDAGIPLKHLAVAIS-CCLSENGYVILDPTKIEEEKMKASVHL 180
            +S+L+ CA      AL DAGI +  L  A+S  C+ ++  +++DP   EE     S  +
Sbjct: 150 DLSVLISCA----SLALADAGIMMYDLITAVSVSCIGKS--LMIDPVTEEEGCEDGSFMM 209

Query: 181 V-----FPNAPVSVVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAAT 224
                 +    +++  E +T  + E ++  +  S   G +  D    CL++  +A+
Sbjct: 210 TCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRD----CLKQSASAS 254

[Close]

BLAST of CsGy2G022050.1 vs. TAIR10
Match: AT3G03710.1 (polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08
Identity = 45/148 (30.41%), Postives = 78/148 (52.70%), Query Frame = 0


Query: 5   RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENPEKAS-- 64
           R DGRT +++RP+   C +L RAHGS  +++G+T+ LA V  G K   ++ +N E +   
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506

Query: 65  ----IEVIWKPKT-GQIGKL----EREC--EMILKRTLQSICILTTNPNTTTSIIVQVIH 124
               ++  + P + G++G++     RE     + +R L++I     +   T  +   VI 
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566

Query: 125 DDGAVSLLLPCAINASCAALVDAGIPLK 139
            +G+ S+   C     C AL DAG+P+K
Sbjct: 567 SNGSSSMASVC---GGCLALQDAGVPVK 591

[Close]

BLAST of CsGy2G022050.1 vs. Swiss-Prot
Match: sp|Q9LX74|EXOS5_ARATH (Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP46 PE=2 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 4.8e-102
Identity = 182/246 (73.98%), Postives = 211/246 (85.77%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNTTTS+I+QV+HDDG+   LLP
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPN  +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           V+PEGS+   GEP+EHGIITS+T G MSVDDY  C+E GRAAT  +SAF R++ Q     
Sbjct: 181 VLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----Q 239

Query: 241 DSSKAG 247
            SSKAG
Sbjct: 241 SSSKAG 239

[Close]

BLAST of CsGy2G022050.1 vs. Swiss-Prot
Match: sp|Q84T68|EXOS5_ORYSJ (Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RRP46 PE=1 SV=2)

HSP 1 Score: 295.4 bits (755), Expect = 5.7e-79
Identity = 153/241 (63.49%), Postives = 185/241 (76.76%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME  R DGR PNQLRP +C+ N L+RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKA
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
           SIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT +PNTTTS+I+QV+ +DG+   LLP
Sbjct: 61  SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINA CAALV AGIPLKHLAVAI C + E+G VILD  K EE+++K+  HLVFPN+  S
Sbjct: 121 CAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
              +   Q   E  E G+ITS+T G MS +DY  C+ERG AA++++S F+R +LQ Q P 
Sbjct: 181 ASSKEPNQ-KEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPG 237

Query: 241 D 242
           D
Sbjct: 241 D 237

[Close]

BLAST of CsGy2G022050.1 vs. Swiss-Prot
Match: sp|Q9NQT4|EXOS5_HUMAN (Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.0e-32
Identity = 79/222 (35.59%), Postives = 125/222 (56.31%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLPCAINASCAALVDA 133
           G  E+  E +++ T +++ + T +P T+ ++++QV+ D G+   LL C +NA+C ALVDA
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGS---LLACCLNAACMALVDA 147

Query: 134 GIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVPEGSTQGVGEP 193
           G+P++ L   ++C L  +G ++LDPT  +E++ +A +                     + 
Sbjct: 148 GVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFAL-----------------DS 207

Query: 194 LEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQ 236
           +E  ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 VERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQ 229

[Close]

BLAST of CsGy2G022050.1 vs. Swiss-Prot
Match: sp|Q9CRA8|EXOS5_MOUSE (Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-31
Identity = 79/222 (35.59%), Postives = 124/222 (55.86%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLPCAINASCAALVDA 133
           G  E+  E +++ T +++ +   +P T+ ++++QV+ D G+   LL C +NA+C ALVDA
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGS---LLACCLNAACMALVDA 147

Query: 134 GIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVPEGSTQGVGEP 193
           G+P++ L   ++C L  +G ++LDPT  +E++ +A +     +A                
Sbjct: 148 GVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDSA---------------- 207

Query: 194 LEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQ 236
            E  ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 -EQKLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQ 229

[Close]

BLAST of CsGy2G022050.1 vs. Swiss-Prot
Match: sp|Q4JB27|RRP41_SULAC (Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 67/240 (27.92%), Postives = 117/240 (48.75%), Query Frame = 0


Query: 5   RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 64
           R DGR  ++LRP+     VL  A GSA +  G+TKV+AAVYGPK    ++   P+KAS+ 
Sbjct: 16  RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75

Query: 65  VIW--------KPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAV 124
           V +        + K     + E E   +++  L+S  +L   P T   I ++V+  D   
Sbjct: 76  VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGT 135

Query: 125 SLLLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFP 184
            L+   A+ A+  AL DAGIP++ L   ++   ++ G ++LD    E+E M     +   
Sbjct: 136 RLV---ALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLN--EQEDMWGEADM--- 195

Query: 185 NAPVSVVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQ 236
             P++V+P      +G+     ++     G M+ D++    E  +   + + A  + +L+
Sbjct: 196 --PIAVLP-----SLGQ-----VVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALK 234

[Close]

BLAST of CsGy2G022050.1 vs. TrEMBL
Match: tr|A0A0A0LLJ9|A0A0A0LLJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 7.4e-132
Identity = 242/246 (98.37%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM
Sbjct: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240

Query: 241 DSSKAG 247
           +SSKAG
Sbjct: 241 NSSKAG 243

[Close]

BLAST of CsGy2G022050.1 vs. TrEMBL
Match: tr|A0A1S3BB90|A0A1S3BB90_CUCME (exosome complex exonuclease RRP46 homolog OS=Cucumis melo OX=3656 GN=LOC103488187 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 1.1e-130
Identity = 240/246 (97.56%), Postives = 241/246 (97.97%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPN PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           VVPEGSTQGVGEPLEHG+ITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQL M
Sbjct: 181 VVPEGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSM 240

Query: 241 DSSKAG 247
           DSSKAG
Sbjct: 241 DSSKAG 243

[Close]

BLAST of CsGy2G022050.1 vs. TrEMBL
Match: tr|M5XGB7|M5XGB7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G449000 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 2.5e-111
Identity = 204/246 (82.93%), Postives = 225/246 (91.46%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDR DGRTPNQLRPLACS NVLNRAHGSASW QGDTKVL AVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRLDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLVAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
            IE+IWKPKTGQ GKLERE EMILKRTLQSICILT NPNTTTS+I+QV++DDGA   LLP
Sbjct: 61  CIEIIWKPKTGQSGKLEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINA+CAALVDAGIPLKHLAVAI CCL+E+GYV+LDP+K+EE+KMKA  +LVFPN+ +S
Sbjct: 121 CAINAACAALVDAGIPLKHLAVAICCCLAESGYVVLDPSKLEEQKMKAFAYLVFPNSVLS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           ++PE   Q  GEP+EHGIITSVTQGAMSVDDY+HCLERGRAAT KMSAFLR+SLQPQLP+
Sbjct: 181 ILPEEQLQVGGEPVEHGIITSVTQGAMSVDDYLHCLERGRAATAKMSAFLRKSLQPQLPI 240

Query: 241 DSSKAG 247
           DSSKAG
Sbjct: 241 DSSKAG 243

[Close]

BLAST of CsGy2G022050.1 vs. TrEMBL
Match: tr|A0A2I4GPK6|A0A2I4GPK6_9ROSI (exosome complex exonuclease RRP46 homolog OS=Juglans regia OX=51240 GN=LOC109009696 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 1.8e-109
Identity = 200/246 (81.30%), Postives = 225/246 (91.46%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDR DGRT NQLRPLACS N+LNRAHGSASWSQGDTKVLAAVYGPKAG KKNENPEKA
Sbjct: 1   MEIDRVDGRTENQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGVKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
            +EVIWKPKTGQIGKLE+E EMI+KRTLQSICILT NPNTTTS+IVQV++DDG+   LLP
Sbjct: 61  CVEVIWKPKTGQIGKLEKEYEMIVKRTLQSICILTINPNTTTSVIVQVLNDDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINA+CAAL+DAGIPLKHLAVAI CCL+++GYVILDPTK+EE+KMKA  +LVFPN  +S
Sbjct: 121 CAINAACAALIDAGIPLKHLAVAICCCLADSGYVILDPTKLEEQKMKAFAYLVFPNLILS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           V+PEGS + VGEP+EH IITSVTQGAMSVDDY+HCL+RGRAAT KMSAFLR++LQPQ+  
Sbjct: 181 VLPEGSLKVVGEPMEHAIITSVTQGAMSVDDYLHCLDRGRAATAKMSAFLRKTLQPQISS 240

Query: 241 DSSKAG 247
           DSSKAG
Sbjct: 241 DSSKAG 243

[Close]

BLAST of CsGy2G022050.1 vs. TrEMBL
Match: tr|V4TTQ0|V4TTQ0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009310mg PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 7.4e-108
Identity = 197/246 (80.08%), Postives = 222/246 (90.24%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR DGR PNQLRPLACSC++L+RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGAVSLLLP 120
           SIEVIWKP+TGQIGK E+E E+ILKRTLQSICILT NPNTTTS+I+QV+HDDGA   LLP
Sbjct: 61  SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180
           CAINA+CAALVDAGIP+KHLAVAI CC +E+GY ILDPTK+EE+KMKA  +LVFPN+ +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKAFAYLVFPNSILS 180

Query: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240
           V+PEGS+   GEP+EHGIITSVT GAMSVDDY HCLERGRAA+ K+S FLRRSLQ +LP 
Sbjct: 181 VLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPG 240

Query: 241 DSSKAG 247
           D SKAG
Sbjct: 241 DLSKAG 243

The following BLAST results are available for this feature:

BLAST of CsGy2G022050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150286.1	1.1e-131	98.37	PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus] >KGN62820...	[more]
XP_008445020.1	1.6e-130	97.56	PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis melo]	[more]
XP_022951618.1	2.3e-124	92.28	exosome complex exonuclease RRP46 homolog [Cucurbita moschata]	[more]
XP_023002484.1	5.0e-124	92.28	exosome complex exonuclease RRP46 homolog [Cucurbita maxima]	[more]
XP_023538111.1	2.5e-123	91.46	exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy2G022050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46210.1	2.7e-103	73.98	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT2G07110.1	2.4e-19	49.56	BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like s...	[more]
AT3G61620.1	1.4e-14	30.11	3'-5'-exoribonuclease family protein	[more]
AT4G27490.1	1.2e-10	25.85	3'-5'-exoribonuclease family protein	[more]
AT3G03710.1	1.5e-08	30.41	polyribonucleotide nucleotidyltransferase, putative	[more]

BLAST of CsGy2G022050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LX74\|EXOS5_ARATH	4.8e-102	73.98	Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP...	[more]
sp\|Q84T68\|EXOS5_ORYSJ	5.7e-79	63.49	Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q9NQT4\|EXOS5_HUMAN	9.0e-32	35.59	Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1	[more]
sp\|Q9CRA8\|EXOS5_MOUSE	3.4e-31	35.59	Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1	[more]
sp\|Q4JB27\|RRP41_SULAC	1.7e-14	27.92	Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 ...	[more]

BLAST of CsGy2G022050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLJ9\|A0A0A0LLJ9_CUCSA	7.4e-132	98.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1	[more]
tr\|A0A1S3BB90\|A0A1S3BB90_CUCME	1.1e-130	97.56	exosome complex exonuclease RRP46 homolog OS=Cucumis melo OX=3656 GN=LOC10348818...	[more]
tr\|M5XGB7\|M5XGB7_PRUPE	2.5e-111	82.93	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G449000 PE=4 SV=1	[more]
tr\|A0A2I4GPK6\|A0A2I4GPK6_9ROSI	1.8e-109	81.30	exosome complex exonuclease RRP46 homolog OS=Juglans regia OX=51240 GN=LOC109009...	[more]
tr\|V4TTQ0\|V4TTQ0_9ROSI	7.4e-108	80.08	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009310mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR020568	Ribosomal_S5_D2-typ_fold
IPR036345	ExoRNase_PH_dom2_sf
IPR001247	ExoRNase_PH_dom1
IPR015847	ExoRNase_PH_dom2
IPR027408	PNPase/RNase_PH_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
biological_process	GO:0031125	rRNA 3'-end processing
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0071028	nuclear mRNA surveillance
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
molecular_function	GO:0004536	deoxyribonuclease activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0004540	ribonuclease activity
molecular_function	GO:0003727	single-stranded RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G022050	CsGy2G022050	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G022050.1	CsGy2G022050.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G022050.1.exon.1	CsGy2G022050.1.exon.1	exon
CsGy2G022050.1.exon.2	CsGy2G022050.1.exon.2	exon
CsGy2G022050.1.exon.3	CsGy2G022050.1.exon.3	exon
CsGy2G022050.1.exon.4	CsGy2G022050.1.exon.4	exon
CsGy2G022050.1.exon.5	CsGy2G022050.1.exon.5	exon
CsGy2G022050.1.exon.6	CsGy2G022050.1.exon.6	exon
CsGy2G022050.1.exon.7	CsGy2G022050.1.exon.7	exon
CsGy2G022050.1.exon.8	CsGy2G022050.1.exon.8	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G022050.1.CDS.1	CsGy2G022050.1.CDS.1	CDS
CsGy2G022050.1.CDS.2	CsGy2G022050.1.CDS.2	CDS
CsGy2G022050.1.CDS.3	CsGy2G022050.1.CDS.3	CDS
CsGy2G022050.1.CDS.4	CsGy2G022050.1.CDS.4	CDS
CsGy2G022050.1.CDS.5	CsGy2G022050.1.CDS.5	CDS
CsGy2G022050.1.CDS.6	CsGy2G022050.1.CDS.6	CDS
CsGy2G022050.1.CDS.7	CsGy2G022050.1.CDS.7	CDS
CsGy2G022050.1.CDS.8	CsGy2G022050.1.CDS.8	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	G3DSA:3.30.230.70		coord: 2..243 e-value: 3.0E-68 score: 231.8
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 139..216 e-value: 2.4E-4 score: 21.0
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 13..136 e-value: 4.0E-24 score: 85.5
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 6..238
None	No IPR available	PANTHER	PTHR11953:SF1	EXOSOME COMPLEX COMPONENT RRP46	coord: 6..238
None	No IPR available	CDD	cd11372	RNase_PH_RRP46	coord: 14..231 e-value: 1.03647E-78 score: 237.463
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	SSF55666	Ribonuclease PH domain 2-like	coord: 136..235
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	coord: 5..166