CsGy2G016690.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy2G016690.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionDNA-directed RNA polymerase subunit
LocationChr2 : 27029314 .. 27030803 (-)
Sequence length681
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCCCTTAATGGTATTCAATTATACATCTTGAAATTGGTGTTCTGAAGGGCGTATACCAAATTATTTTAGAAGTTGATGCTATGTTTTCGTGATTGGAGATATTGAAGTTGAGAAAATGCAATTGAGAAACTACTGTTGTAATATTTTAAGCACTCTTGTATTTGACATCTCTAACCGAATTTTTGTGGCTTATTTCAGAGATCGTCGGTAGAGAAATAAGTTACACAGTAACTGCTGAGGTATGTCTTTTAAATCATACACATTAATATGTTATCCCCATGCTTTCTAGGTCTAAGGCACAGTATCCTCTCTGCAACACGACCTTAGCAATGCTTTTAAACTTGAGCATTCTCTTATAATTTCTGCTACTTTTATGATGCTTTCTAGGATTGTTTCTGGATGAATTATTTGTAGATTGTGAGAAGGGCTTAAACAACTGTATAATGTTCTCTAGGTCCAGGCAAATCAATAAACCAGACCCTGGAAATTCTTATTCGGTCAACATCTGGAACTGTGAAAATTTTTAGTATTAGCAAACGTTCATAATGATCTATTATTGATACGATGCTCCCTTATGAGTTGTCTGATATCAAAGAAATGTTTCATTTTGAAATCCTCGTGTGGCAATTTGCAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGTTAGCAAAGGTAGTAGGAGAAAATAAGGTGTATGTATGGTATTCAATTTTGCTTGAGATACAGTCCACTAATATGAAGCTTTGTGATGTTTGGCAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACATTAACAAAATTAGAATTGTGGGTTATTTAGGGTTTATTTCTGTCTTTTCTTCCATTAGAAAGAGTAATAAGTTTGAGTGTGGTTTGAATAAAAATGCAGATGAGATCGGCTGATGAAGGCCAGACCACATTTTATACCTGCACTAAATGTCATCATCAGACTAGAGAGAATTGATCTTCCATATAACTTTTTTTAGGATGTCACATTTATTCATCCTTGAATTAGTTGGATTGGAATCCAAAAGCTTTAACATGATGAGTTATGTTCTTAAACAATTAAACTTGATCTGTATGGAATGATTAATCTGAGAATATGACAGAAGTGGCAAAATTTGTTGATTGATTTGATTTGGTAGTAATTTTGTTTCTAGTTTTGGTAGTAATATCTAAGAATATGACGAGATTCACTCCATCGGCCTTTTTTGTTTTAGACCAATTTATTTTGTGTGTAGATTTGAATTTGAGGACATAATTTATTTTAAACTAGTCCAAGAGGCCCCCTAAAGATCCAATTCATGTAGGGAAAAAGAGACTTTAGAAGCCCTATCTTCTAATTTGTCCTTGAAAATATGTATTGGTATGGTTTTTCTAAAAAACAAAAATCAAAATTTTTAATTGTCTTTGAGAGAGG

mRNA sequence

ATGATTTCCCTTAATGAGATCGTCGGTAGAGAAATAAGTTACACAGTAACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGTTAGCAAAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCGGCTGATGAAGGCCAGACCACATTTTATACCTGCACTAAATGTCATCATCAGACTAGAGAGAATTGATCTTCCATATAACTTTTTTTAGGATGTCACATTTATTCATCCTTGAATTAGTTGGATTGGAATCCAAAAGCTTTAACATGATGAGTTATGTTCTTAAACAATTAAACTTGATCTGTATGGAATGATTAATCTGAGAATATGACAGAAGTGGCAAAATTTGTTGATTGATTTGATTTGGTAGTAATATCTAAGAATATGACGAGATTCACTCCATCGGCCTTTTTTGTTTTAGACCAATTTATTTTGTGTGTAGATTTGAATTTGAGGACATAATTTATTTTAAACTAGTCCAAGAGGCCCCCTAAAGATCCAATTCATGTAGGGAAAAAGAGACTTTAGAAGCCCTATCTTCTAATTTGTCCTTGAAAATATGTATTGGTATGGTTTTTCTAAAAAACAAAAATCAAAATTTTTAATTGTCTTTGAGAGAGG

Coding sequence (CDS)

ATGATTTCCCTTAATGAGATCGTCGGTAGAGAAATAAGTTACACAGTAACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGTTAGCAAAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCGGCTGATGAAGGCCAGACCACATTTTATACCTGCACTAAATGTCATCATCAGACTAGAGAGAATTGA

Protein sequence

MISLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Homology
[Close]
BLAST of CsGy2G016690.1 vs. NCBI nr
Match: XP_004143007.1 (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >XP_004143009.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >KGN62253.1 hypothetical protein Csa_2G345940 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 6.5e-36
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 3   SLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 62
           S  EIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA
Sbjct: 37  SAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 96

Query: 63  DEGQTTFYTCTKCHHQTREN 83
           DEGQTTFYTCTKCHHQTREN
Sbjct: 97  DEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of CsGy2G016690.1 vs. NCBI nr
Match: XP_022962626.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962627.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata])

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 3   SLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 62
           S  EIVGREISYTVTAEEIRKQLGISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSA
Sbjct: 37  SAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSA 96

Query: 63  DEGQTTFYTCTKCHHQTREN 83
           DEGQTTFYTCTKCHHQTREN
Sbjct: 97  DEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of CsGy2G016690.1 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 3   SLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 62
           S  EIVGREISYTVTAEEIRKQLGISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSA
Sbjct: 37  SAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSA 96

Query: 63  DEGQTTFYTCTKCHHQTREN 83
           DEGQTTFYTCTKCHHQTREN
Sbjct: 97  DEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of CsGy2G016690.1 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 5.5e-35
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 3   SLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 62
           S  EI+GREISYTVTAEEIRKQLGISLIDEEK+QL+KERRRCEKCGNDEAWFESRQMRSA
Sbjct: 37  SAKEIIGREISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSA 96

Query: 63  DEGQTTFYTCTKCHHQTREN 83
           DEGQTTFYTCTKCHHQTREN
Sbjct: 97  DEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of CsGy2G016690.1 vs. NCBI nr
Match: XP_022997634.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_022997635.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 3   SLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 62
           S   I+GREISYTVTAEEIRKQLGISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSA
Sbjct: 37  SAKGIIGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSA 96

Query: 63  DEGQTTFYTCTKCHHQTREN 83
           DEGQTTFYTCTKCHHQTREN
Sbjct: 97  DEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of CsGy2G016690.1 vs. TAIR10
Match: AT3G25940.1 (TFIIB zinc-binding protein)

HSP 1 Score: 80.5 bits (197), Expect = 5.4e-16
Identity = 40/79 (50.63%), Postives = 58/79 (73.42%), Query Frame = 0 

Query: 6   EIVGREISYTVTAEEIRKQLGISLIDEE---KMQLAKERRRCEKCGNDEAWFESRQMRSA 65
           +I+ +EI+YTV+AE+IR++LGISL  E+   + +L K ++ CEKC + E  + +RQ RSA
Sbjct: 40  DIIDKEIAYTVSAEDIRRELGISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSA 99

Query: 66  DEGQTTFYTCTKCHHQTRE 82
           DEGQTT+YTC  C H+  E
Sbjct: 100 DEGQTTYYTCPNCAHRFTE 118

[Close]
BLAST of CsGy2G016690.1 vs. TAIR10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 47.4 bits (111), Expect = 5.0e-06
Identity = 22/61 (36.07%), Postives = 37/61 (60.66%), Query Frame = 0 

Query: 21  IRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTR 80
           ++K +   +  ++    A+    C +CG+D+A+F+S Q+RSADE ++ FY C KC    R
Sbjct: 45  VKKSIEAVVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWR 104

Query: 81  E 82
           E
Sbjct: 105 E 105

[Close]
BLAST of CsGy2G016690.1 vs. TAIR10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 46.6 bits (109), Expect = 8.6e-06
Identity = 22/61 (36.07%), Postives = 37/61 (60.66%), Query Frame = 0 

Query: 21  IRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTR 80
           ++K +   +  ++    A+    C +CG+D+A+F+S Q+RSADE ++ FY C KC    R
Sbjct: 45  VKKSIEPVVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWR 104

Query: 81  E 82
           E
Sbjct: 105 E 105

[Close]
BLAST of CsGy2G016690.1 vs. Swiss-Prot
Match: sp|Q1RMP0|RPA12_BOVIN (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 2   ISLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRS 61
           I++ +  G+ +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRS
Sbjct: 42  INVRDFEGKVVKTSVVFNKLGTAMPLSMEEGPEFQGPVVDRRCSRCGHEGMAYHTRQMRS 101

Query: 62  ADEGQTTFYTCTKCHHQTREN 83
           ADEGQT FYTCT C  Q +E+
Sbjct: 102 ADEGQTVFYTCTNCKFQEKED 122

[Close]
BLAST of CsGy2G016690.1 vs. Swiss-Prot
Match: sp|Q9P1U0|RPA12_HUMAN (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-08
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 2   ISLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRS 61
           I++ +  G+ +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRS
Sbjct: 45  INVRDFEGKVVKTSVVFHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRS 104

Query: 62  ADEGQTTFYTCTKCHHQTREN 83
           ADEGQT FYTCT C  Q +E+
Sbjct: 105 ADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of CsGy2G016690.1 vs. Swiss-Prot
Match: sp|Q5TM50|RPA12_MACMU (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=ZNRD1 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-08
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 2   ISLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRS 61
           I++ +  G+ +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRS
Sbjct: 45  INVRDFEGKVVKTSVVFHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRS 104

Query: 62  ADEGQTTFYTCTKCHHQTREN 83
           ADEGQT FYTCT C  Q +E+
Sbjct: 105 ADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of CsGy2G016690.1 vs. Swiss-Prot
Match: sp|Q1XHV8|RPA12_PANTR (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=ZNRD1 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-08
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 2   ISLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRS 61
           I++ +  G+ +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRS
Sbjct: 45  INVRDFEGKVVKTSVVFHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRS 104

Query: 62  ADEGQTTFYTCTKCHHQTREN 83
           ADEGQT FYTCT C  Q +E+
Sbjct: 105 ADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of CsGy2G016690.1 vs. Swiss-Prot
Match: sp|Q791N7|RPA12_MOUSE (DNA-directed RNA polymerase I subunit RPA12 OS=Mus musculus OX=10090 GN=Znrd1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-07
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 0 

Query: 2   ISLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRS 61
           I + +  G+ +  +V   ++   + +S+ +  ++Q     RRC +CG++   + +RQMRS
Sbjct: 42  IDVRDCEGKVVKTSVVFNKLGATIPLSVDEGPELQGPVIDRRCPRCGHEGMAYHTRQMRS 101

Query: 62  ADEGQTTFYTCTKCHHQTREN 83
           ADEGQT FYTC  C  Q +E+
Sbjct: 102 ADEGQTVFYTCINCKFQEKED 122

[Close]
BLAST of CsGy2G016690.1 vs. TrEMBL
Match: tr|A0A0A0LKC4|A0A0A0LKC4_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-36
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 3   SLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 62
           S  EIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA
Sbjct: 37  SAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 96

Query: 63  DEGQTTFYTCTKCHHQTREN 83
           DEGQTTFYTCTKCHHQTREN
Sbjct: 97  DEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of CsGy2G016690.1 vs. TrEMBL
Match: tr|A0A1S3BBZ4|A0A1S3BBZ4_CUCME (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 3   SLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 62
           S  EI GREISYTVTAEEIRKQLGISLI EEKMQLAKERRRCEKCGNDEAWFESRQMRSA
Sbjct: 37  SAKEINGREISYTVTAEEIRKQLGISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 96

Query: 63  DEGQTTFYTCTKCHHQTREN 83
           DEGQTTFYTCTKCHHQTREN
Sbjct: 97  DEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of CsGy2G016690.1 vs. TrEMBL
Match: tr|B3FNK6|B3FNK6_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 3   SLNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSA 62
           S  EIVGREISYTVTAEEI+KQLGISLIDE  MQLAKERRRCEKCGNDEAWFESRQMRSA
Sbjct: 37  SAKEIVGREISYTVTAEEIKKQLGISLIDENNMQLAKERRRCEKCGNDEAWFESRQMRSA 96

Query: 63  DEGQTTFYTCTKCHHQTREN 83
           DEGQTTFYTC+KC  QTREN
Sbjct: 97  DEGQTTFYTCSKCLPQTREN 116

[Close]
BLAST of CsGy2G016690.1 vs. TrEMBL
Match: tr|A0A1S3TXE0|A0A1S3TXE0_VIGRR (DNA-directed RNA polymerase subunit OS=Vigna radiata var. radiata OX=3916 GN=LOC106759645 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 51/79 (64.56%), Postives = 70/79 (88.61%), Query Frame = 0 

Query: 4   LNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSAD 63
           + +I  +EISYT+TAEEIR++LG+ +I+E+K+QL+K  ++CEKCG+DEA F +RQMRSAD
Sbjct: 38  IQDIRDKEISYTITAEEIRRELGMEIIEEQKVQLSKVNKKCEKCGHDEANFYTRQMRSAD 97

Query: 64  EGQTTFYTCTKCHHQTREN 83
           EGQTTFYTCT+C HQ++EN
Sbjct: 98  EGQTTFYTCTRCGHQSQEN 116

[Close]
BLAST of CsGy2G016690.1 vs. TrEMBL
Match: tr|A0A0S3SJQ0|A0A0S3SJQ0_PHAAN (DNA-directed RNA polymerase subunit OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G193700 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 51/79 (64.56%), Postives = 70/79 (88.61%), Query Frame = 0 

Query: 4   LNEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSAD 63
           + +I  +EISYT+TAEEIR++LG+ +I+E+K+QL+K  ++CEKCG+DEA F +RQMRSAD
Sbjct: 38  IQDIRDKEISYTITAEEIRRELGMEIIEEQKVQLSKVNKKCEKCGHDEANFYTRQMRSAD 97

Query: 64  EGQTTFYTCTKCHHQTREN 83
           EGQTTFYTCT+C HQ++EN
Sbjct: 98  EGQTTFYTCTRCGHQSQEN 116

The following BLAST results are available for this feature:
BLAST of CsGy2G016690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143007.16.5e-3697.50PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >XP_004... [more]
XP_022962626.11.5e-3596.25DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962... [more]
XP_023546814.11.5e-3596.25DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo][more]
XP_022144336.15.5e-3593.75DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214... [more]
XP_022997634.11.2e-3493.75DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_02299763... [more]
BLAST of CsGy2G016690.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G25940.15.4e-1650.63TFIIB zinc-binding protein[more]
AT1G01210.15.0e-0636.07DNA-directed RNA polymerase, subunit M, archaeal[more]
AT4G07950.18.6e-0636.07DNA-directed RNA polymerase, subunit M, archaeal[more]
BLAST of CsGy2G016690.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q1RMP0|RPA12_BOVIN1.4e-0835.80DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=ZNRD1 PE=2 ... [more]
sp|Q9P1U0|RPA12_HUMAN3.0e-0835.80DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=ZNRD1 PE=... [more]
sp|Q5TM50|RPA12_MACMU3.0e-0835.80DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=ZNRD1 P... [more]
sp|Q1XHV8|RPA12_PANTR3.0e-0835.80DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=ZNRD1 ... [more]
sp|Q791N7|RPA12_MOUSE1.5e-0734.57DNA-directed RNA polymerase I subunit RPA12 OS=Mus musculus OX=10090 GN=Znrd1 PE... [more]
BLAST of CsGy2G016690.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKC4|A0A0A0LKC4_CUCSA4.3e-3697.50DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P... [more]
tr|A0A1S3BBZ4|A0A1S3BBZ4_CUCME1.8e-3495.00DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3... [more]
tr|B3FNK6|B3FNK6_CUCSA1.1e-3190.00DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
tr|A0A1S3TXE0|A0A1S3TXE0_VIGRR3.6e-2264.56DNA-directed RNA polymerase subunit OS=Vigna radiata var. radiata OX=3916 GN=LOC... [more]
tr|A0A0S3SJQ0|A0A0S3SJQ0_PHAAN3.6e-2264.56DNA-directed RNA polymerase subunit OS=Vigna angularis var. angularis OX=157739 ... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006379mRNA cleavage
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR034004Zn_ribbon_RPA12_C
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR001222Znf_TFIIS
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy2G016690CsGy2G016690gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy2G016690.1CsGy2G016690.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G016690.1.CDS.5CsGy2G016690.1.CDS.5CDS
CsGy2G016690.1.CDS.4CsGy2G016690.1.CDS.4CDS
CsGy2G016690.1.CDS.3CsGy2G016690.1.CDS.3CDS
CsGy2G016690.1.CDS.2CsGy2G016690.1.CDS.2CDS
CsGy2G016690.1.CDS.1CsGy2G016690.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G016690.1.exon.6CsGy2G016690.1.exon.6exon
CsGy2G016690.1.exon.5CsGy2G016690.1.exon.5exon
CsGy2G016690.1.exon.4CsGy2G016690.1.exon.4exon
CsGy2G016690.1.exon.3CsGy2G016690.1.exon.3exon
CsGy2G016690.1.exon.2CsGy2G016690.1.exon.2exon
CsGy2G016690.1.exon.1CsGy2G016690.1.exon.1exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G016690.1.three_prime_UTR.2CsGy2G016690.1.three_prime_UTR.2three_prime_UTR
CsGy2G016690.1.three_prime_UTR.1CsGy2G016690.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 42..81
e-value: 3.7E-12
score: 56.4
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 43..78
e-value: 3.7E-16
score: 58.6
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 40..80
score: 12.826
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 3..82
e-value: 1.4E-19
score: 68.6
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 28..82
e-value: 1.5E-18
score: 67.8
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 3..82
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 3..82
NoneNo IPR availableSUPERFAMILYSSF57783Zinc beta-ribboncoord: 21..82
IPR034004Pol I subunit A12, C-terminal zinc ribbonCDDcd10507Zn-ribbon_RPA12coord: 42..82
e-value: 8.28903E-21
score: 77.6284