CsGy2G012110.1 (mRNA) Cucumber (Gy14) v2

NameCsGy2G012110.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionorgan-specific protein P4-like
LocationChr2 : 12076699 .. 12078690 (+)
Sequence length1193
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCCCCTTCCCAAAACCCTAGAAAATTAAATTATTGAGAATACTTCCTTTTTTAATATATATAAATATAAAATATTTATGATAAGTATAGTTCCAATAAATAAATAATTTAATGTTTTGACTCCCAAACAAATTTTGTCTATAAATTGGAAAACCAAACCATGGTTAAAACCAATTGTATGAACAAAAAATTATATATTAATTGCTTTGGCTTCTTCTCTCTTTAGCTGTGTTGTGAGAGAAACCATAGATATGAAGCTTTCTATTGCTTTCTTCTTTCTTCTTTCTCTTCTCTTGGTAAGCTCTAATTCTTCTTCCTTTTTCCTTAATTAATCTCCTTTCAGATATATATTTATTATATGCTTTTGTTCTAATTTGTTATTTTATTTTTTAATTAAGGATAATTGAAATTGAGTTAGATTTGTGAATATTCATAGCATGATTATCATAAAACCACTGGATCATAATATATATTCTTATGATATAGTTTGGGTTTAGTTTAGTTTTATTGTGTTAATACCTTAAGGCATATATATGTTTCTGTCCCTCTCATCTCACCTATAGTCTTTTTTTTCTTACAAAACAGAAAAAGAAATTTCCTAATTTTCTCTGATATATAATTTGTCTAAAACAGAGTTATGAAGTTCTTTGTTTTTTTTTTTTTTTCCCTTTTTTTAAGCAAATAGAATTTTGTATTCTTCAATGGAGGAATTTGTCATTAAACAGGCTAGTTTTTAAAAACAAATTTGGGTGTTAGTTTTTTCTTTTCTTTTATTGATGATTTTCTTAGAAATCTAAAAGTAAAGAAATTTGTTTAATACCTTATTTTATATATAAATGAGAAGTTAAATACTTTTTACGATTTCAAAACTTGATTTAGTTTTTTTAAAACGTTTTTACAACGAAAGAACAAAAAAAAAAAAAATGGAGGGAGTAATTTTATAAGCTTAAATTATAAAAACTAAATAGTCTAAACAATAATCCTCACATGCAACTGATTTTTAAAGTCACTAAATAGTAATCAAACGGATCGGCAAAGACAACAGAATTTGATGGAGTTGCTTACATGTTTTTGAATGATGGGGTTTAATTACAGCTTGGAGATCTAACCCATGGCAGAAGCAGGAAAGAAGAAGGAGAATATTGGAAAAAGATAATGAAAGAAGAAGCACTTCCTGAAATGCTTAAAGAGCTATTAATAGAAGCTGATGATCCTTCTTCAATGGTGGAGTACAATAATAATAAGCAACAAAAAGAGCATTTTTTGACCAACTTTGATCCTCATCCAAATGCTATAATTTATCATGCCCATGCCCATGCCCATAACAGTAACCCCACTGCACTTCCAAATTTATCCCCATGAATTCTTCTTATTTCCCAAATATATCCCTTTAAAAACCACAAGAATGTTTTCTCATTTGAATTATTTATCAAACCATATATAATTATTATGTGTAAATTAATATATTTAGTGTGTGGTTTTCTAATTTTATTTAGTTTCAATTGGTTTTGAAAGTATTGATGTCCTATAGCTATGTATGGTGATGATGTACGCAAACAAAGTGGTTCTGATGTAAATTTCCATTATAGGTTATATTGTTACGTTATTGCATATATATTATTTTGTATCTCAATTTTTGTTTAAAGTCTTGACCACTTTGAATGGTATTTTTGAAATGTTTAAAGGAAAGTTTAAGCATTCAATTTTTGTGAGTAGATATGTATTTTAAACCCTCTTTGTATGCTTATTTGATGTCGATACACTCCTACATCACCCTAAAAAAACGAGTGAATGAGTGTTGTTGTATCAACGAAGAAAAGTTAGGAAGTGTTTAATTAGATATGCAATAATCTTTGTCTAAAGAAAGTCATTAATTTTGGTTTTAGTTTTAAATTCAATATGATGGAAAATACAATATGAATAAACATTGTGTTGATTTAGCTGAAATTGACAAATCTCCATTTGAGCTTAAATGTTGAAGAACAATATCAC

mRNA sequence

GTCCCCTTCCCAAAACCCTAGAAAATTAAATTATTGAGAATACTTCCTTTTTTAATATATATAAATATAAAATATTTATGATAAGTATAGTTCCAATAAATAAATAATTTAATGTTTTGACTCCCAAACAAATTTTGTCTATAAATTGGAAAACCAAACCATGGTTAAAACCAATTGTATGAACAAAAAATTATATATTAATTGCTTTGGCTTCTTCTCTCTTTAGCTGTGTTGTGAGAGAAACCATAGATATGAAGCTTTCTATTGCTTTCTTCTTTCTTCTTTCTCTTCTCTTGCTTGGAGATCTAACCCATGGCAGAAGCAGGAAAGAAGAAGGAGAATATTGGAAAAAGATAATGAAAGAAGAAGCACTTCCTGAAATGCTTAAAGAGCTATTAATAGAAGCTGATGATCCTTCTTCAATGGTGGAGTACAATAATAATAAGCAACAAAAAGAGCATTTTTTGACCAACTTTGATCCTCATCCAAATGCTATAATTTATCATGCCCATGCCCATGCCCATAACAGTAACCCCACTGCACTTCCAAATTTATCCCCATGAATTCTTCTTATTTCCCAAATATATCCCTTTAAAAACCACAAGAATGTTTTCTCATTTGAATTATTTATCAAACCATATATAATTATTATGTGTAAATTAATATATTTAGTGTGTGGTTTTCTAATTTTATTTAGTTTCAATTGGTTTTGAAAGTATTGATGTCCTATAGCTATGTATGGTGATGATGTACGCAAACAAAGTGGTTCTGATGTAAATTTCCATTATAGGTTATATTGTTACGTTATTGCATATATATTATTTTGTATCTCAATTTTTGTTTAAAGTCTTGACCACTTTGAATGGTATTTTTGAAATGTTTAAAGGAAAGTTTAAGCATTCAATTTTTGTGAGTAGATATGTATTTTAAACCCTCTTTGTATGCTTATTTGATGTCGATACACTCCTACATCACCCTAAAAAAACGAGTGAATGAGTGTTGTTGTATCAACGAAGAAAAGTTAGGAAGTGTTTAATTAGATATGCAATAATCTTTGTCTAAAGAAAGTCATTAATTTTGGTTTTAGTTTTAAATTCAATATGATGGAAAATACAATATGAATAAACATTGTGTTGATTTAGCTGAAATTGACAAATCTCCATTTGAGCTTAAATGTTGAAGAACAATATCAC

Coding sequence (CDS)

ATGAAGCTTTCTATTGCTTTCTTCTTTCTTCTTTCTCTTCTCTTGCTTGGAGATCTAACCCATGGCAGAAGCAGGAAAGAAGAAGGAGAATATTGGAAAAAGATAATGAAAGAAGAAGCACTTCCTGAAATGCTTAAAGAGCTATTAATAGAAGCTGATGATCCTTCTTCAATGGTGGAGTACAATAATAATAAGCAACAAAAAGAGCATTTTTTGACCAACTTTGATCCTCATCCAAATGCTATAATTTATCATGCCCATGCCCATGCCCATAACAGTAACCCCACTGCACTTCCAAATTTATCCCCATGA

Protein sequence

MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVEYNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSNPTALPNLSP
BLAST of CsGy2G012110.1 vs. NCBI nr
Match: XP_004148852.1 (PREDICTED: uncharacterized protein LOC101213460 [Cucumis sativus] >KGN61786.1 hypothetical protein Csa_2G245500 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 4.3e-45
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
           MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE
Sbjct: 1   MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60

Query: 61  YNNNKQQKEHFLTNFDPHPNAIIYHAXXXXXXXXPTALPNLSP 104
           YNNNKQQKEHFLTNFDPHPNAIIYHAXXXXXXXXPTALPNLSP
Sbjct: 61  YNNNKQQKEHFLTNFDPHPNAIIYHAXXXXXXXXPTALPNLSP 103

BLAST of CsGy2G012110.1 vs. NCBI nr
Match: XP_022986644.1 (organ-specific protein S2-like [Cucurbita maxima])

HSP 1 Score: 100.1 bits (248), Expect = 4.5e-18
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 0

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MKLS+AFF LLSL+L  D++HG SRK++G+YWKK+MK E +PEMLKELL +     SMVE
Sbjct: 1  MKLSLAFFLLLSLVLFVDVSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFD----DSMVE 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYH 86
                QK+ F+ NFDPHPNAIIYH
Sbjct: 61 -----NQKQRFMNNFDPHPNAIIYH 75

BLAST of CsGy2G012110.1 vs. NCBI nr
Match: XP_022944721.1 (organ-specific protein P4-like [Cucurbita moschata])

HSP 1 Score: 99.4 bits (246), Expect = 7.7e-18
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 0

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MKLS+AFF L+SL+L  D++HG SRK++G+YWKK+MK E +PEMLKELL +     SMVE
Sbjct: 1  MKLSLAFFLLISLVLFVDVSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFD----DSMVE 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYH 86
                QK+ F+ NFDPHPNAIIYH
Sbjct: 61 -----NQKQRFMNNFDPHPNAIIYH 75

BLAST of CsGy2G012110.1 vs. NCBI nr
Match: XP_023534667.1 (organ-specific protein P4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 3.8e-17
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 0

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MKLS A FFLLSLLLL  ++H  +RKE+GEYWKK+MK+EA+PEMLKELL + D   S+V 
Sbjct: 1  MKLSAA-FFLLSLLLLASVSH--ARKEKGEYWKKVMKDEAIPEMLKELLFDDD---SLV- 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYHA 87
            ++  Q EHF+ NFD HPNAIIYH+
Sbjct: 61 --SSDAQSEHFMNNFDTHPNAIIYHS 77

BLAST of CsGy2G012110.1 vs. NCBI nr
Match: XP_023513271.1 (organ-specific protein S2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.7 bits (239), Expect = 5.0e-17
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 0

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MKLS+AFF LLSL+L  D++ G SRK++G+YWKK+MK E +PEMLKELL +     SMVE
Sbjct: 1  MKLSLAFFLLLSLVLFVDVSDG-SRKDQGKYWKKMMKNEEIPEMLKELLFD----DSMVE 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYH 86
                QK+ F+ NFDPHPNAIIYH
Sbjct: 61 -----NQKQRFMNNFDPHPNAIIYH 75

BLAST of CsGy2G012110.1 vs. TAIR10
Match: AT1G49310.1 (unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 0

Query: 5  IAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVEYNNN 64
          + F  LLS LL  +L+ GR+     EYWKK+MK E LPE +KELL            N  
Sbjct: 9  VVFIVLLSFLLFVNLSEGRTGGVAEEYWKKMMKNEPLPEPIKELL-----------NNPF 68

Query: 65 KQQKEHFLTNFDPHPNAIIYH 86
          +  +E F+ NFD     IIYH
Sbjct: 69 RTAQERFIQNFDTKSVVIIYH 78

BLAST of CsGy2G012110.1 vs. Swiss-Prot
Match: sp|P17772|OSS2_PEA (Organ-specific protein S2 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.6e-04
Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 0

Query: 8  FFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVEYNNNKQQ 67
          F LL L LL  + +  SRK+ GEYWK +MK++ +PE ++ LL    D S++     + ++
Sbjct: 7  FALLPLFLLLIVANVESRKDVGEYWKLVMKDQDMPEEIQGLL----DASNIKNSKTHAKE 66

Query: 68 KEHFLTNFDPHPNA 82
              +  F+P P A
Sbjct: 67 NMGAIGEFEPRPYA 76

BLAST of CsGy2G012110.1 vs. TrEMBL
Match: tr|A0A0A0LP62|A0A0A0LP62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.9e-45
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
           MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE
Sbjct: 1   MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60

Query: 61  YNNNKQQKEHFLTNFDPHPNAIIYHAXXXXXXXXPTALPNLSP 104
           YNNNKQQKEHFLTNFDPHPNAIIYHAXXXXXXXXPTALPNLSP
Sbjct: 61  YNNNKQQKEHFLTNFDPHPNAIIYHAXXXXXXXXPTALPNLSP 103

BLAST of CsGy2G012110.1 vs. TrEMBL
Match: tr|W9R0Z1|W9R0Z1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026929 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.6e-09
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 0

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MK   AFF L S+LL+G++++  +RK+ GEYW  IMK++ +PE +++L  + D PS +  
Sbjct: 1  MKSIFAFFVLFSILLVGNISY--ARKDAGEYWNSIMKDQPIPEAIRDLFYDQDLPSDL-- 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYHA 87
                + + F+ +FD  PN IIYH+
Sbjct: 61 --TGPTKHDRFVRDFDVQPNVIIYHS 80

BLAST of CsGy2G012110.1 vs. TrEMBL
Match: tr|A0A2R6RHC4|A0A2R6RHC4_ACTCH (Organ-specific protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07027 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          M+   AFFFLLSLL L  L  G  RK+  EYW+ +M +E +P+ +KEL+ E  DPS   E
Sbjct: 1  MRALSAFFFLLSLLFL-FLNVGDGRKDPAEYWRNVMGDELMPDAIKELVTE--DPSPFSE 60

Query: 61 YNNNKQ-------QKEHFLTNFDPHPNAIIYH 86
             N Q       + +HF+ +FD  PN IIYH
Sbjct: 61 GTKNSQYSSSETTKMDHFIKDFDTWPNFIIYH 89

BLAST of CsGy2G012110.1 vs. TrEMBL
Match: tr|A0A2I4FZ60|A0A2I4FZ60_9ROSI (organ-specific protein P4-like OS=Juglans regia OX=51240 GN=LOC109003300 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.2e-08
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MK   AF  L SL LL  +    +R++ G+YWK IMK++ +PE +K LL   D P     
Sbjct: 1  MKSISAFLLLFSLFLLVLVNLSDARRDPGDYWKSIMKDQPIPEAIKGLL-HRDLP----- 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYHA 87
          Y ++ ++ +HFL +FD  PNAIIYHA
Sbjct: 61 YASDARENDHFLKDFDVTPNAIIYHA 80

BLAST of CsGy2G012110.1 vs. TrEMBL
Match: tr|V7AE51|V7AE51_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G046400g PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 1   MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
           MK   AFF + SLLL+ +L++  +RK+ G+YWK +M  + +PE +K+LL++    S  V 
Sbjct: 33  MKSYFAFFLIFSLLLVVNLSY--ARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQVSDTV- 92

Query: 61  YNNNKQQKEHFLTNFDPHPNAIIYH 86
                  K+HF+ +FD  PN I+YH
Sbjct: 93  -------KDHFIRDFDIRPNVILYH 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004148852.14.3e-45100.00PREDICTED: uncharacterized protein LOC101213460 [Cucumis sativus] >KGN61786.1 hy... [more]
XP_022986644.14.5e-1862.35organ-specific protein S2-like [Cucurbita maxima][more]
XP_022944721.17.7e-1861.18organ-specific protein P4-like [Cucurbita moschata][more]
XP_023534667.13.8e-1762.79organ-specific protein P4-like [Cucurbita pepo subsp. pepo][more]
XP_023513271.15.0e-1761.18organ-specific protein S2-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT1G49310.11.8e-0841.98unknown protein[more]
Match NameE-valueIdentityDescription
sp|P17772|OSS2_PEA9.6e-0435.14Organ-specific protein S2 OS=Pisum sativum OX=3888 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LP62|A0A0A0LP62_CUCSA2.9e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1[more]
tr|W9R0Z1|W9R0Z1_9ROSA9.6e-0939.53Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026929 PE=4 SV=1[more]
tr|A0A2R6RHC4|A0A2R6RHC4_ACTCH1.3e-0844.57Organ-specific protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00... [more]
tr|A0A2I4FZ60|A0A2I4FZ60_9ROSI8.2e-0844.19organ-specific protein P4-like OS=Juglans regia OX=51240 GN=LOC109003300 PE=4 SV... [more]
tr|V7AE51|V7AE51_PHAVU1.1e-0740.00Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G046400g PE=4 ... [more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR024489Organ_specific_prot
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy2G012110CsGy2G012110gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy2G012110.1CsGy2G012110.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G012110.1.five_prime_UTR.1CsGy2G012110.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G012110.1.exon.1CsGy2G012110.1.exon.1exon
CsGy2G012110.1.exon.2CsGy2G012110.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G012110.1.CDS.1CsGy2G012110.1.CDS.1CDS
CsGy2G012110.1.CDS.2CsGy2G012110.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G012110.1.three_prime_UTR.1CsGy2G012110.1.three_prime_UTR.1three_prime_UTR


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024489Organ specific proteinPFAMPF10950Organ_specificcoord: 26..88
e-value: 4.0E-10
score: 40.3
NoneNo IPR availablePANTHERPTHR33731:SF8SUBFAMILY NOT NAMEDcoord: 1..93
NoneNo IPR availablePANTHERPTHR33731FAMILY NOT NAMEDcoord: 1..93